RNA id: XM_021569910.2


Basic Information

Item Value
RNA id XM_021569910.2
length 2591
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110494653
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79370819 ~ 79382289 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGCACCCCCTATGTGAAAACATTCCGGATGTCAAGAACAGTAGTCTGCTCTTCACTTTCTCGTCTTTCTCTAATTTTCTTGTCTTGTTATTGCGTCACATGTTGGGGTGTCCGAATAGGGCGATGGGGTCGTTATAAAGTAAACGCGCTGCTGATAATCTCGATTTTTTTTTCGAATTGGGGTATTTCCGTTAAGTAGCCAATAATACATTGTTTCCAGACCAGACGCGAAACTGCCCACCTCTGCTCCGTTATTCGTAATAACTTATATGGAAACTTGGTACGATAGAAGAACATCAGGGGCGAGGCATCGGCCGCTGCGGGGTGGATCCCTGATTTGTCACAGGTGTGATGATTGCCTATGAGTGAAGAAGGAACTGAAGCTGTGACTAACAGAATGTCTTGGGGTGAGTTCATTGAGCTCCGTGAGTTGAGGCTGCATGACAATGACCGGATAGAGCTGACCTGCTGCGAGGTGCCTCGCTCACCACCTCGCCTGGAGCGGGCCAATGCCCTGCGGATCAGCCCAGGGAAGGTCCCAGAGCTGCTCAGCCGGGTGGGCATCATCCGACTGCTGGGGGATAGCCTGGACCCACGGCTcacagatgagaggggagagggacatgACTTCCAGCCCTGCAGCCATGCCCAGCCCACCTGGTGTGACCTGTGTGGAGACTTCATCTGGGGACTGTACAAACAGAGCCTGCGCTGTGCCAATTGCGGATTCACATGTCACTATCGATGTCGACCTCTCATCCAATTAGATTGCAGTTTGGATCGTGGCTCCACAGTTGAACAAACATGTGCTGTAGAGACTGATACAAATGTGGATGAGCAGGTCAAATGTGGGAAGCAGCAGGAGCTGTCAGGCACAGAGATCCAGCAGAAGGTGAAGGAGTACAATGCTCAAATCAACAGCAACCTCTTTATGAACCTGAACAAAGATGGCTCCTTCACTGGCTTCATAAAGGTCCAGTTCAAGCTGGTACGACCTGTGTCAGTTCCCCCACCAAGAAAGGGTACTGCAACACAGGATGGTGCGGGCAAGAAGAATGGGGGAGTAAAACGTTGCACCTCTTTCTACCTGCCCAAGGATACATCTAAACACCTACACATCAGCTCCCGGACATGCGCTCGTGAGGTCATCGAAGCCTTGCTAAAGAAGTTCACTGTGGTGGACAACCCTGGAAAGTTTGCCCTGTTTGAGCGCACCGAGCGTCATGACCAAGTGTTCCTACGTAAGCTGCCTGATGACGAGCGTCCACTCGAACTGCGTCTGTGTGCTGGACCCAATGAGAAAGCCCTCAGTTTGGTATTGAAAGAGAATGAGACTGGAGAGGTCAACTGGGATGCCTTCTCTATGCCAGAGCTCAAGAACTTTGTCCGCATGTTACAGCGTGAGGAGGAGGAGCATGTCAAGCAGATTTTGCAGCGCTACGCTCTGGCCCGCACCAGAATGCAGGAGGCCCAAGCTGCTGCTTCCATCCCTGGTGGTTCCTCCGCTAGTGGTTCTACCCCTGGCTGAGAAACATGTCGCCTATGGGACAACCTGCACCTCTGACTGACAACCATCACAAGATGACCAGTCATCACTGCATCCAAAGATCCCAGAGAACACAAGTGGACACCTCCCTCAAAGGAGGAGAGTGAAAGAacgaatgagagcgagagggcgCATGAGAGCAAGAGGGCAAGCGCGTGTGAATGTGAGAGCTATCAGAAGTGCCGTACAGCTGGAGAGAGTCTGTTGATAATGAGAGTTGAGAAACAGTATATGAAACTGTGGCTGATGAGAGACTGGCTTTGTCCAGTACTGCCTCTCATTATGGGGGCGCCATTTCACTATCCTGGGTGAGCTACCTGGTTCGTAGCGTTTATCTCATTATTCTTGCTGGCAGTAGGGTCCATAGATTATATCATTTATAGCTTTGGGGTAACGATCAAAGATAATTTTGAGACACCTGAGTGGGGTAAGCCATATCAAAAAGCTGTTTAAATCCCTTAATGCCAAGCAATAAGAGGGTAGCCAACCTACTAGCTAAGACAAATGTTGAACATATTCAGGTGCTGTCTGCCTCAGTATCTCCAGACCCAAATGCTAGTCAGAAtaacaagcaatggacattatggGCCAGGTAGGTACCCCAGGTTTCCATTTGACCCCAATgtctgccacatacctcttgcaCATCCGTACTGTGATGGATGTTACTCTTTTTGCTGTCCCTTTATGAAACTGAGTGGGAGTGCCCCATGTGTTGGGTGCACTGTGAATGTCAATTGAGAGAACAATCCCCAGGTTGATTTAAATGATAGGGGAATCTCATCCTCCAAACACTTTGAACTGGAAGCTGATGATTTTTAtggaatgtttgtttgtttgtatatcTTTTCATGTTCTTTATGAGATTTTAAACCTAAAACAACAGAATAATAGAGTTGAGAATTGGATTCATATTATCAGTACATGTCTATATTGCTTGAAATAATACCTTGACTGTCAATtattcaaaaaaaaaaagtttttacatgtccagtgtcaatatattttttacaaaacaATAATAAATTAGCACTGTTCACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1707071 lncRNA upstream 29871 79338634 ~ 79343426 (+) True LOC118936427
TU1707037 lncRNA upstream 50087 79321262 ~ 79323210 (+) False LOC110493267
TU1707038 lncRNA upstream 50087 79321262 ~ 79323210 (+) False LOC110493267
TU1707055 lncRNA upstream 58459 79313591 ~ 79314838 (+) False LOC110494644
TU1707193 lncRNA downstream 123099 79505388 ~ 79505593 (+) True G1493309
TU1707202 lncRNA downstream 134493 79516782 ~ 79517163 (+) True G1493318
TU1707413 lncRNA downstream 135008 79517297 ~ 79517805 (+) True G1493488
TU1707423 lncRNA downstream 140735 79523024 ~ 79523296 (+) True G1493498
TU1707437 lncRNA downstream 162157 79544446 ~ 79544948 (+) True G1493511
XM_021569905.2 mRNA upstream 7160 79359278 ~ 79366137 (+) True nprl2
XM_021569908.2 mRNA upstream 17788 79351782 ~ 79355509 (+) True LOC110494652
XM_036948255.1 mRNA upstream 17836 79351772 ~ 79355461 (+) False LOC110494652
XM_036948256.1 mRNA upstream 17836 79351782 ~ 79355461 (+) False LOC110494652
XM_036948434.1 mRNA upstream 22715 79343065 ~ 79350582 (+) False LOC118936427
XM_036947904.1 mRNA downstream 128 79382417 ~ 79387551 (+) False tusc2
XM_036947905.1 mRNA downstream 1134 79383423 ~ 79387551 (+) False tusc2
XM_036947906.1 mRNA downstream 1134 79383423 ~ 79387551 (+) False tusc2
XM_021567433.2 mRNA downstream 1141 79383430 ~ 79387551 (+) False tusc2
XM_021567434.2 mRNA downstream 1141 79383430 ~ 79387551 (+) False tusc2
TU1707053 other upstream 37225 79329619 ~ 79336072 (+) True LOC110493267
TU1706085 other upstream 597570 78773229 ~ 78775727 (+) True G1492310
TU1706084 other upstream 599538 78770747 ~ 78773759 (+) False G1492310
TU1705741 other upstream 1119989 78252629 ~ 78253308 (+) True G1492003
TU1705669 other upstream 1183007 78189012 ~ 78190290 (+) False G1491963
TU1707042 other downstream 356 79382645 ~ 79385437 (+) False tusc2
TU1707040 other downstream 1506 79383795 ~ 79385437 (+) False tusc2
TU1707041 other downstream 1506 79383795 ~ 79385437 (+) True tusc2
TU1709446 other downstream 1911151 81293440 ~ 81293926 (+) True G1495346
TU1709462 other downstream 1954728 81337017 ~ 81338163 (+) True G1495362

Expression Profile