RNA id: XM_021569916.2


Basic Information

Item Value
RNA id XM_021569916.2
length 2707
RNA type mRNA
GC content 0.46
exon number 4
gene id hyal1
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79398640 ~ 79401885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTCGTCCTCTTTTGATTGGTGCTTGGAAAATCTCTGGTTTTTCAAGATGCACTGCATTTAGTTCGCGTGGCACAAATGGTGATCCGAATTTGCACTTTGTGCAATAAAAATAACAAAGTCCGAACCCCAGGCATAGCGGACGACCTAAATCCAGCGCACCTACTTGTTTCTCCAGACCGTTTTCCTTCCTCTTTCTTACTTTGAAAAGAGAAGTTGGCTATCAGCAGATCATGCGATAGCATACACTTTTCTCTATAGTCAGTTGACTTGTATAAACCAACTATTTGCCCACGAAACCGATGATATGGGTATAAAGTGCATTTTCCCTGGGGCGCTGATTCTTTGTGTGAATGTGGCCAGTATTGTTCTTAGCAGTGAGCATGAAGCAGGAGCACTCCCCACACTGTCCCAGCTGCCCTTCCTCACTGTGTGGAATGCCCCTACAGCCCAGTGTAAGAGCCGCTATGGGGTGGATCTGGACCTGGGAGTGTTCAACATAGTGAGCAATCAGAACCAGAGCTTCATGGGTGACAACATCACCATCTTCTACAATACTAAACTGGGTCTGTACCCAAGATACAACCAAGGAGAGGCAGTTAACGGCGGGGTGCCACAGAATTCCAGCCTGCTGGAGCACCTGAGGGCTACCTCTGAGGACCTCCGGACCTACATGCCTGACAGAGACTTCCAAGGGCTGGCTGTGGTGGACTGGGAGAGCTGGAGACCACTCTGGGAGCGCAACTGGGAAGGCATGAAGGTTTACTGGGAGGGGTCCAGGGCCCTAGTGAGGTCCAAGCACCCAGACTGGAGCCCTGCTCAGGTGGAGGTGGTGGCCCGCAAGGAGTTTGAGGATGCAGCACGGGCGTTCATGGAGGGCACCCTAAGGTTGGGGGAGCAGGAGAGACCCAAGGGGATGTGGGGCTTTTATGGCTTCCCCTCCTGCTATAACTACtacaaaaacacaacatataacTACACAGGGGAGTGTCCTCAGATAGAGTTGAAGAGGAATGATGATCTGTTCTGGCTGTGGAACGTCTCCTCTGCCCTCTACCCAGATATCTACCTGGATCTTGGGATGCGTGGTCTTGGCAACGGCATCCTCCTCTACACACACCACCGTGTCATGGAAGCCATGAGAGTGGGCGCGCAGGAGGTCCTTGTCCACACGATTGGAGAGAGTGCTGCTTTAGGATCTGCAGGGATCGTACTGTGGGGAGACAATGCCTACTCCAAATCTAAGGCGAATTGTGAGGCAATCAAAGACTACCTGGATGAAACCCTGGGCCGTTACTTGGTGAATGTGACCACAGCAGCTACTCTGTGTAGCAGGACGGTGTGCTCCTCTCAGGGCCGATGCCAGAGGAAAGACAAAGTCTCCCGTGCCTACCTCCACCTGGACCCCAGTGCCTGGACTGTGGTGCCTGAGAAGAGGCCAGAGGGAGGGCAACGCTACAGGGTGCTGGGCCAACTGAAGCCACGTGAGGCTGTGTACATACAGACCCACTTCCAGTGCCAATGCTATCCTGGCTGGGGAGGTAAACACTGCTCCAAGCCCCTGTAATTCTGATCGAGACAATCCCCTTGTGTTTAAAGGAGCATCGGTTACATTACgttactctacattacattacgtTAGCCCACTCTGATTACTGTACTCACTCTTATGGGACACATTATACCCAGTCCTGAGCCAATAGAGTATAGAAGTATAACAATTATACCCAGCGTTGTTGCATTCGTGACCCTCATTCAGACTCCCCCTGCTCAACACCAATCTGCCTCTGACCACTCCAAATAGGTGGGTTACATGTTACCAGTTGGATGAGTTTACTAGTGAGGGATGAAGTGATATGATATTATGAACAGTTTATTTGTAGATCACTGAGAAAGCTAGGAATAAACCATAGTTGACATTGACATTTAAGCACATGTCTCTTTAGAAAATAGTTTCCAGACATTTTACAAAAGTAGAAATGTAATCTTGTTAAATTACAGTTTATGACCTGGGATTATTCCTATTGGTTTCAAACACGTCACAGAAAATCAGTGGTTAAGCTTGAATCcttagttgaaacaataacaaaggggTCATTCCGCCTCTGTTTCGGTAttaagctgagggatgggcctttTAGAAGTGTAACCATTCTCAAAtttatagacagagctatggatgcacggactgaccatccataaaatcaaaatgatagttttaaccatgtttttgaTGCTATACAGTGTTTACACTGTTTAccaacattggagtaaaacaacatattttgagttctgatggggtatgcgAGTTGAGCTAAGCTCACGATGCATTTAcacgttatattcttcaagaatcaatgggtatatatcattCATTAGTCCAacaatggatgtagcaactaaggattctagctttaaaatAATGCTTCATTTCGGGACTTTTAAGTTTTTAAAGCTATTAGAGCTAAGGAGATCCACACCAACTGGAGTGGTGCTTGACAGTTTCAGCTGTTAGCTAATGGCAAAGTGATTCTTGAGCACCACAAATGTACTCAGAAATGGACTAGAACCCCGTGGGCGCATATGTGACTCATTAGAAATGTGATGTAATGTACTCATGATTGATACTGTATGGATGAATGTATTGTCTACCAGATACTTCAACTGAAATGTTTTTGAATTTTACATTCAATAAATGATTTCACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1707071 lncRNA upstream 55214 79338634 ~ 79343426 (+) True LOC118936427
TU1707037 lncRNA upstream 75430 79321262 ~ 79323210 (+) False LOC110493267
TU1707038 lncRNA upstream 75430 79321262 ~ 79323210 (+) False LOC110493267
TU1707055 lncRNA upstream 83802 79313591 ~ 79314838 (+) False LOC110494644
TU1707193 lncRNA downstream 103503 79505388 ~ 79505593 (+) True G1493309
TU1707202 lncRNA downstream 114897 79516782 ~ 79517163 (+) True G1493318
TU1707413 lncRNA downstream 115412 79517297 ~ 79517805 (+) True G1493488
TU1707423 lncRNA downstream 121139 79523024 ~ 79523296 (+) True G1493498
TU1707437 lncRNA downstream 142561 79544446 ~ 79544948 (+) True G1493511
XM_021569914.2 mRNA upstream 5460 79389233 ~ 79393180 (+) True LOC110494654
XM_036947906.1 mRNA upstream 11089 79383423 ~ 79387551 (+) False tusc2
XM_036948226.1 mRNA downstream 145931 79547816 ~ 79844313 (+) False LOC110493268
XM_036948227.1 mRNA downstream 145931 79547816 ~ 79844313 (+) False LOC110493268
XM_036948228.1 mRNA downstream 145931 79547816 ~ 79844313 (+) False LOC110493268
XM_036948229.1 mRNA downstream 145931 79547816 ~ 79844313 (+) True LOC110493268
XM_036948233.1 mRNA downstream 446597 79848482 ~ 79871163 (+) True LOC110494656
TU1707042 other upstream 13203 79382645 ~ 79385437 (+) False tusc2
TU1707040 other upstream 13203 79383795 ~ 79385437 (+) False tusc2
TU1707041 other upstream 13203 79383795 ~ 79385437 (+) True tusc2
TU1707053 other upstream 62568 79329619 ~ 79336072 (+) True LOC110493267
TU1706085 other upstream 622913 78773229 ~ 78775727 (+) True G1492310
TU1709446 other downstream 1891555 81293440 ~ 81293926 (+) True G1495346
TU1709462 other downstream 1935132 81337017 ~ 81338163 (+) True G1495362
TU1709526 other downstream 2030326 81432211 ~ 81602157 (+) True LOC110494696
TU1710167 other downstream 2426847 81828732 ~ 81833101 (+) False LOC110494698
TU1710572 other downstream 2761321 82163206 ~ 82169750 (+) False G1496351

Expression Profile