RNA id: XM_036948227.1


Basic Information

Item Value
RNA id XM_036948227.1
length 8382
RNA type mRNA
GC content 0.46
exon number 38
gene id LOC110493268
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79547816 ~ 79844313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGtgcaagggagagggagggaggagagcgagtGCGCAAAGGCACAGCAGCACCAGCGGTGGCAGCAGCGTCAATGCATCTGTGAGTCTTCGAATCGGTTGTCTTGAGCTGCCAGTCCTCTGTACGTTTCAGATTGAGATTTCACAGCGCAAGGTCTTGAGGAACCTCGCCATCAACCGACACACTTTCGGAGCTCAGCGTTTATTATTAGCTCCGCTCTAAGAGACTATTATTATCACGACCCTATTCTATTTATGCCGGTTTCTTGAATATTTAATGGAAAATGGCGATCTGCGCTCAGTCCTACGGTATATTCTGTCTGTTCTCAATCCAAACTATCCTCATCATTAGCTTATCTTCGCCGGCAACGGGGAGCCTCCGCTTCCCCCAACACTACACAATGATGCATTGGGCAGGCCGCATTGAAAAGGAGCTGGAGAAGACTATACAGTTGGTCACTGGAACCCAGCAGATAAGAGGGATTTACAATGAGAAGAAGAGTCAGTTTGACATCAAGAGGAACAATCCCAAGGACCTGGTGGAGAGGGTGGCACGAGACATCGCCAAGCTGCTCACTAGCAAGAGGAGAGCCCTGGAGAGGCTGGCCAGGGAGGCGGAGCAGCTGCAGACAGATTTTCCCTGGCTGGACAGTATCAAGGAGAGCGACATGGAGTACTATGATTCGAAAGCGGAATCAGACTATACGGAGGATGGAGATggggaagagaacctgatggagaaCCCCTACTCCATGAAGCTGGAGTTTGTGGACGATCCCAACTTTAAAAACAAGGTCAACTACTCCTACAGCGCCGTCCAGATCCCCACAGACATCTATAAGGGCTCACCAGTCATCCTGAATGAGCTGAACTGGACCCAGGCTCTGGAGAGGGTATTCATTGATAACCGCCGGGAGGACAGCTCTCTGCGCTGGCAGGTGTTCGGCAGCGCCACGGGGGTCACAAGATATTACCCAGCCACTCCATGGAGAGCACCCAATAAGATTGACCTGTATGACGTCCGCAGGCGGCCATGGTACATCCAAGGGGCATCATCTCCCAAGGACATGATCATCATCGTGGACGTGAGTGGCAGTGTCAGTGGACTCACCCTGAAACTGATGAAGACGTCGGTCATGGAGATGCTAGACACTCTGTCAGATGACGACTATGTGAATGTAGCCAGGttTAACGAGAAGGCTGATGCTGTCGTCCCCTGTTTTAAGACCTTGGTCCAGGccaacatgagaaacaagaagaTCTTCAAGGAGTCTATCATGCACATGCAAGCCAAAGGAACCACTGACTACAAGTCTGGCTTCCAGTTCGCCTTCGAACAGCTACTCAATGATACCGGCGCCCCAAGGGCGGGCTGCAATAAGATGATAATGATGTTtacagatggaggagaggatcgtGCACAGGACATCTTTGAGAAGTACAACTGGCCCAACAAAACAATCCGAGTATTTACCTTTTCAGTTGGGCAGCACAACTATGATGTCACCCCCTTGCAGTGGATAGCTTGTGCCAACAAAGGATTCTACTATGAGATTCCATCCATTGGAGCCATCAGAATTAACACACAGGAGTACCTGGATGTGCTGGGTCGGCCCATGGTGCTGGCTGGGCCCAAGGCCAAGCAGGTCCAATGGACCAATGTCTACCAGGATGCTCTGGGTCTGGGTCTGGTCATAACTGGGACCATGCCAGTCTTCAACCTCACCGCTGATGCAAATTCTCAGACGCAGCTTGTCCTTGGTGTCATGGGGGTGGATGTTGCAATCAACGAAATTAAGAGGAAGACACCAACATACaggCTTGGAGCCAATGGATACACCTTTGCGATCGACCAAAATGGCTATTTGCTCCTGCACCCCAACCTGCAACCTAAGATCATTAACTTCAGAGAACCTGTCACCCTGGACTTCCTGGATGCTGAGCTAGAGGACAGTAAAAAGGAGGAGatcCGTCGAGAAATGATTGACGGCAAATCAGGGCAAAAGAAAATCAAGACTCTAATTAAGTCAGTTGATGAGAGGTACATTGATGAGGCCATGCGGACATATACCTGGACACCAGTGGAGGGCACAGATTACAGTCTAGGGCTGGTACTGCCCACATACAGTGAGAACCACATCAAGGCTAACCTGAGTGACCAGATCCTGCAGGTGCAGTATTTTGAATCTCTGCTGCCAAACAGTTTTGAGTCTGAAGGACATGTATTCATAGCTCCCAGGGAATACTGCAACGAGCTAGAGCTCTCCAACAACAACACTGAGTTCCTGCTCAACTTCATCGCTCTCATGGAGAAGGTGACACCTGACTCCAAACAATGTGACAACCTGCTCCTTCATAACCTCATCCTCGACACTGGCATCATCAGACAGCTGGTGGAGAAGGTGTGGAAGACCAAAGACCTCACCACCTATGGCTTTCTGGCAGTGTTTGCTGCAACAGACGGAGGGATTACAAGAGTGTTTCCCAACAAGGCTGCTGAGACCTGGGAAGAGGACCCTGAGCCTTTTAATGCCAGCTATTACCGCCGCAGTCTGGACAACAAGGGCTACATCTTCAGAGCGCCTTATCGCACCGTGAATGATGAGCTGCTGAACCCAGAGAACGACACCATAGGAATCCTGGTCAGCACTGCAGTGGAGATCACAGTGGGAGGGAAAACCATCAAACCTGCAGTGGTTGGCGTAAAGCTGGACCTTGAGGCCTGGGTGGACAAATTCAAGATCCTGGCTAGCAACCAAACAAGTCCAACAAGTGACAACCGCCAAGTCCAACAAACGTGTGGACCAACCAGTGGCTGTGAGATGGACTGTGAAGCCAACAGCGAAGACCTTCTTTGTTACCTGGTGGATGACGGTGGTTTCCTGATCATGTCCAATCAGAAGGATCACTGGAACAAGATTGGCATGTTCTTCAGTGAGGTGGACCCCTACCTGATGCATGCTCTCTACAACAACTCCTTTTACAACCGGAAGCAGTCCTTTGACTACCAGTCTGTGTGTGACCCCGTGCCAAGCAGCAACACCGGAGCTGCACCAAGAGGAGTTTTTGTGCCCACCATTGCAGACTTTGTGAACCTGGCCTGGTGGTCATCAGCAGCTGCCTGGTCCCTATTTCAGCAGCTGCTCTATGGAATGGCCTACCACAGTTGGTTTGTCACAGAtgaggtggaggcagaggggatGGACTCCAGAGAGACCAGCTGTGTGACGATACAGACTCAGTTCTACTTCACTAACATCAACAGCTCCTATGACATCCTGCAAGACTGTGGCAACTGTTCCAGgctgatccATGCCAAGAGGTTAAACAACACCAACCTGCTGTTTGTGGTGGCAGAGAAGATGCCCTGCAACACCTGTGAGGTGGAGAAACTGTCCCAGGCGGAGACAGAGTTCAAGGAGGATAACCCATCATGTGAGGACATGAGTGCAGCGAGGTATCGAAAAGGGCCCGCTGTATGCTACGACTACAATCTATCTGAGAACACATCAGACTGTGGGCGGGGCCACTCCTTCCACCCTTCACTCCAGACCCTGCTCATGATTCAGCTCTTCCTCCTCTATCCAATCGCCAGCCCTCATATTCTGCCCCTTTTACTTTAATTTTCCTCCAGTCTGCTCTCCCCAGCTCTTTGTCCATCCTGAAGctcccaccctctcccctctATGCTCCGCCCCTGCTCTAGTCATAGGTTATAATGGGACTTCCTGTCACTGCAACTTGGAAGCCTTGAGTACCGCGCTACTGTACCCAGCTAGCTTCAATTGTTGTTGCTTAGTGACAGTTGCAGGACCTTTATGTTCTCAGCGAGTTGTGACACCTTCATCCATGGGAAGAGATTCAGAAGGTTGGTGTTCCAACCACCACAATTATCAGAGGCGATGTCAGAAAATGAAAAAAGACCCCATCCCCACCCGCATCAACAAGACGAGTGACAAGTGAAAAGACAAGTTGGATGCCATGTCACAGAGCTCCAACCGTCATGGACACAGCAGAGTTTAGGTTGTCTGTTTGTGCCTCTGTTAGTCAGGTGGGATGAAGAGACATGGCCTCCATCTCGCTCATTCATCTCTGACCTGATCAGTTTCATCGCTCTGTCATGTGTCTCTCATAGGGGGCTACTGTACGGATCATTCAGAAAATTAAGGAAAAAAAGAACTTTCAACTATACAAAAACATACAATTATAAACTGTTGAAGTGTTGAGTATTCAAAGCACATGTTAGGGTATCATTTGCAATGAAAGTTATTACATTAATTTATGCACTATATCTACTTCTTGCCAAAATGAGAGACTTTGATGTGGTCTTGTTTTTATAACCAAGTGAGAGGAAAAAGAGAAACCCAGAAAGGAAAACTAGAGAAATAGTGTTAGGAATATCTGAGTTGGCTGAATTCCAATTCTTCTTGTACACCTCTACTGTTCTCCACTTGAAGTTAGAACTGTTTCTGCCCCTGGAAGCACAGTATTATATTTATAATCATGGTAACATGGAACTATTCTATGAAATAGTAGTCACGTTGTATAAAATggagacaggcacaggaataCATAGGGGGTTTTAATACTCCACCCAAAAATACAACATGCCATGAAAGACACGGGGATAAAGCCCAAAACAAACATGCATTcaaaaacacagggatgtaacccaaacaaaagagcgaggttaaacctctaataaatacacggGGCGAGACCCGCAATACAATACACAGGACGAAAcccgtaataacaaatgcacaacaatacacgggacccGTAAATAACGAGTACACAATACACTCAGAAAACCGAAACAacaaagcacaggtactcacaagaacaacagacatgggaacaataaccgacaagacattggtgaacagagggcacatatacaattactaatcaggaGAATGGGAatcaggtgtgcataatgagacCGTTCAGTGGCACCTAGaagccggtgacgtagacctccggaactggtgCACGGAaggagcagcagtaccgggggaatCCGTGACACATTTGATTATCATAGTTGACCGATGTTAGTTAATGGATTGGTAATTATGTGTCCATCATCATAGATGACTGATGTTAGTTAATGAATTGGTAATTATGTTTCCAAATCGGACAAAGCAAATTATATAAAAAAGCAAATTATATACTTTTCCCTTGCAAAAAGAATTCAAATACTAGGCTACACCAATGTATTATGAATCAGTATTAAGCCTCTGAAAAGTCTGAGCGTTTGGGCTTCATTGCTGTATGTGGTGTGTACTTTCCCACTCTCCACCAGACTAATTGAatcgttgtttccacgtcatttcaacaaaatgacattgaaccaacgtggcatagacgttgaattgacaatTGTGCTCAGTGGGATCCTTTCTGATCAGTGGACATTCTGACTGACCTCTACTCCTAACCCAGTGAAAGCTAACCCCTCTGCCAATCCTCATACAGCCGCTCCACCAGGTCCACTTAATGTTCCTAGGACTATATTTGTATGTGTTTAATATCTGTTGTCACCACAGCAGAGCAGATATACTAATATATATTCAGACTGGCCCATAAGTATCTCGTTTTAGTTGCAGGTAGGTTTTGGCAGAACTTAGCTTGCATTACCTTTGACAGACGCTGTGTAACTTCAGACCATTTGCTGCTGGGGGATTGGGGTTGAACATTTCCCACATGAAGGAATGCAGCCGAGGCCACTACAACTTACTGTACGGTGACAACTGAGCTGCAGTCTGGGTTTTCTGTTACATGTCATTCTGATCAATTTGAAGTGAAATGTCATTAGTCTCCATGTTTTGTCGTCATAGTGCCTTGATGCACTTTGTTTTGGAAAGCATTGTCTCTTGAGCTACTGTACAGTACCTTTATAGAAGAGGCACCCTAATGGCTGTGGAGCTACAGGATCTTTATAGAGCAAGTCTGTTGGCTATATATCTATGGTAGCTTTATAGAGACACCAAATTGACTAGACGTTATTGTAGCTCAATGTCGACTTTCGATTGGCTGTGGCTCCTGGCTGCTGTACCATTCCAGGGCTACCTGATTGCTACCAGATAGAGTCGCTGTACAGTACCTTTACAGAGCCATCTATAGAGCTAAACTATCAGTATAAATCGACTTAACTGGTCATAGATCTACCTTTATAGGGTCACCTGACCGCTATCATTGCGTTTCTGTCTGAACCGTATGtgcgtttgtgtttgtgtatgggTGTATGTTTGTTTTAACCCTCAGAGGGAATGTCTTTAAAACTGGGTTGAGAGGATGGGGAATGACAGTTGTGGTAGCGTAGCTGTTTGTTGTTCCAATTCCAATGGAAGAAGTGTTATATCAGATGTTGTTATggagggaaaaaaaatattttacaaaaaaaaaaaaaagaatccaaTCAATTTTTTCTCACCGGTTTGCTCAATATATTGTCATGAGGGagctgcatactgtatgtgaccCCTGTATTCACAGAGGTGTTCACAAATAATGTTTAATATGTCCGTGTGTTTCTGTTTCAAAGGATACATAGTGACTAAGCCTCTCTAAATGCCTTAGTGTTTCAGTGTTCTCCCTCTTACACACACTCGCGCGCATgcgcgcgtacacacacacactgtgagccTCCCAAATATTAACTTTCTCCACAGACTTTCCCAATCCAGAATGTTGCACTCTGGATTTAAAGAGGTTTAGGTTTTGATGTGTCCGTCCGTCGATATAAAATGGTGTGAGTTTCTTGTACACATTGCTGCTTGGAGTGGAGGACTTTCATAGTTTACATTGACTCTGAATCTGTATTGACTCTGAAATCCCTCCACCCCACCTCACTGTTAACGTAACATCTAAACCCCAAAACCTCATTTACTGTAACCATAAATACACACAATGTACAGTGAACAATATCATTTTTGGCAAGACAAAATGTTTCGTAACAGCAAaattcaattttttattttaaataggcaagtcagttaagaacaaattcttatttacaatcagagtctaccccagccaaaccctgacgatgctgggccaattgtgcactgtgctatgggactcccgatcacagccgattgtgatacagcccaggatcgaacccaggtctgtagtgacgcctctagcactggaatgcagtgccttagaccgctgccccacCCAGGATCCCTATCTCAGTGAAAGACTGGACCAAATAGAAACTCAGAATCTGATGTTTGCAATTGTCTCCTTTCAATGTTAGGGTCCACCATTTTTGAAATTCCTAGATAGTCCTGTTGcattttattgttttattatatCACAGCATTTGTTTGTCCCTCTGTTGTCCCTCCGTCAATGAAGGTTACATTCGCTGTGGAAATGTACCCCCTGTGACTTTCTCTGGCTCAGCAGCAGACACAAGCACTAACAAATTTACACATTCAGACATGCAGTTACACACTTATGCACCCACATGCACAAAGCACACACATGTAACACTAACAGTTATATACCTACACATGCACAGCTGGGGGATGTTCAGCTCTAGACTGAAGTAAGCCAGGGATGTCTATTCCCTGTGTGGGATGTCAGAGGCTGGCTCAGGGTGTGGGTCTCCATAGAACAGCATGAGACCGTGTCAAACAAAAGGTAAAAGAATCATgatttgtgtgtctgtatgtctgtgtgtctgtatgtctgtgtgtctgtgtgtctgtatgtctgtgtgtctgtgtgtctgtatgtctgtgtgtctgtatgtctgtgtgtctgtgtgctgagGGACACAGATCGGTTTTCTGTGGTTTGAAACATTTACTTTTTGCTCTAAAAAAAATAAGGGGAAAAAGGGCAAGTTTGGGGTGAGAGGACCAGGTCTGGTTTACAGCCAGCCCTAAAGGGAGGGTCTCCACATGGCCCTGCCCCTGCCTACCCTTGCAGTGTCTGTGCGTCTCTGTGGGAAAGACACGTGTGTATGTGattctgtagtctgtagtctggtGCTATGTGACCCTGTTTGAcaaatgtgttaaaaaaaaaaaaacagaaacaaaaAATTAATAAATTCAGTCAAATTCTaagtgaagtaaaaaaaaaaatggaataaagTAAAGATAAGTTTGAGATCtaaactgtttttatttttatttattttctgtgggtgtctgagtgtgtatgtgtgtgcgcggaAGATTTAGCTCCCTCTCGCTGGGCATTGGTCCATGTCGCTCCATTCTTTTGTACTgataaagcaaaaaaaaaaaaaagaagagggtAAAATTTTTAAAATATTGTGTCTGTGACTCCTTGTAAAATATTTTCAAATtgtttattacagagaatcagttATTAAATAATGTTCATATTTTTCACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1707437 lncRNA upstream 2868 79544446 ~ 79544948 (+) True G1493511
TU1707423 lncRNA upstream 24520 79523024 ~ 79523296 (+) True G1493498
TU1707413 lncRNA upstream 30011 79517297 ~ 79517805 (+) True G1493488
TU1707202 lncRNA upstream 30653 79516782 ~ 79517163 (+) True G1493318
TU1707193 lncRNA upstream 42223 79505388 ~ 79505593 (+) True G1493309
TU1707636 lncRNA downstream 2922 79847235 ~ 79847725 (+) True G1493698
TU1707449 lncRNA downstream 98778 79943091 ~ 79950459 (+) True G1493517
TU1707671 lncRNA downstream 128699 79973012 ~ 79973225 (+) True G1493733
TU1707672 lncRNA downstream 129819 79974132 ~ 79974513 (+) True G1493734
TU1707667 lncRNA downstream 135268 79979581 ~ 79979855 (+) True LOC110493270
XM_021569915.2 mRNA upstream 145931 79398640 ~ 79401885 (+) False hyal1
XM_021569916.2 mRNA upstream 145931 79398640 ~ 79401885 (+) True hyal1
XM_021569914.2 mRNA upstream 154636 79389233 ~ 79393180 (+) True LOC110494654
XM_021567434.2 mRNA upstream 160265 79383430 ~ 79387551 (+) False tusc2
XM_036948233.1 mRNA downstream 4169 79848482 ~ 79871163 (+) True LOC110494656
XM_036950735.1 mRNA downstream 30020 79874333 ~ 79879794 (+) False LOC110494660
XM_036950734.1 mRNA downstream 30401 79874714 ~ 79879794 (+) False LOC110494660
XM_036950736.1 mRNA downstream 30401 79874714 ~ 79879794 (+) False LOC110494660
XM_021569924.2 mRNA downstream 30401 79874714 ~ 79882252 (+) True LOC110494660
TU1707042 other upstream 162379 79382645 ~ 79385437 (+) False tusc2
TU1707040 other upstream 162379 79383795 ~ 79385437 (+) False tusc2
TU1707041 other upstream 162379 79383795 ~ 79385437 (+) True tusc2
TU1707053 other upstream 211744 79329619 ~ 79336072 (+) True LOC110493267
TU1706085 other upstream 772089 78773229 ~ 78775727 (+) True G1492310
TU1709446 other downstream 1449127 81293440 ~ 81293926 (+) True G1495346
TU1709462 other downstream 1492704 81337017 ~ 81338163 (+) True G1495362
TU1709526 other downstream 1587898 81432211 ~ 81602157 (+) True LOC110494696
TU1710167 other downstream 1984419 81828732 ~ 81833101 (+) False LOC110494698
TU1710572 other downstream 2318893 82163206 ~ 82169750 (+) False G1496351

Expression Profile