RNA id: XR_005037239.1


Basic Information

Item Value
RNA id XR_005037239.1
length 54
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC118940652
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80286945 ~ 80286998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAGTTGCTCTTTcagtatttctccagtaggtttcctcaaagagaaagccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1708240 lncRNA upstream 32767 80253744 ~ 80254178 (+) True G1494253
TU1708229 lncRNA upstream 41882 80244578 ~ 80245063 (+) True G1494242
TU1708202 lncRNA upstream 71998 80214615 ~ 80214947 (+) True G1494216
TU1708113 lncRNA upstream 79847 80206825 ~ 80207098 (+) True G1494129
TU1708058 lncRNA upstream 171288 80115442 ~ 80115657 (+) True G1494076
TU1708300 lncRNA downstream 16676 80303674 ~ 80303896 (+) True G1494313
TU1708303 lncRNA downstream 18696 80305694 ~ 80306069 (+) True G1494316
TU1708309 lncRNA downstream 25534 80312532 ~ 80313116 (+) True G1494322
TU1708321 lncRNA downstream 34506 80321504 ~ 80321766 (+) True G1494334
TU1708322 lncRNA downstream 35470 80322468 ~ 80322876 (+) True G1494335
LOC110494682 mRNA upstream 239882 80038726 ~ 80047063 (+) True LOC110494682
XR_002469304.2 mRNA upstream 245194 80025090 ~ 80041751 (+) True LOC110494679
XM_021569964.2 mRNA upstream 248805 80025090 ~ 80038140 (+) False LOC110494679
XM_021570511.2 mRNA upstream 269170 80015109 ~ 80017775 (+) True LOC110495196
XM_036950738.1 mRNA upstream 306850 79959861 ~ 79980095 (+) False LOC110493270
trnak-cuu-20 mRNA downstream 136880 80423878 ~ 80423950 (+) True trnak-cuu-20
trnak-cuu-21 mRNA downstream 137862 80424860 ~ 80424932 (+) True trnak-cuu-21
trnak-cuu-22 mRNA downstream 138843 80425841 ~ 80425913 (+) True trnak-cuu-22
trnak-cuu-23 mRNA downstream 140618 80427616 ~ 80427688 (+) True trnak-cuu-23
trnak-cuu-24 mRNA downstream 142106 80429104 ~ 80429176 (+) True trnak-cuu-24
TU1707042 other upstream 901508 79382645 ~ 79385437 (+) False tusc2
TU1707040 other upstream 901508 79383795 ~ 79385437 (+) False tusc2
TU1707041 other upstream 901508 79383795 ~ 79385437 (+) True tusc2
TU1707053 other upstream 950873 79329619 ~ 79336072 (+) True LOC110493267
TU1706085 other upstream 1511218 78773229 ~ 78775727 (+) True G1492310
TU1709446 other downstream 1006442 81293440 ~ 81293926 (+) True G1495346
TU1709462 other downstream 1050019 81337017 ~ 81338163 (+) True G1495362
TU1709526 other downstream 1145213 81432211 ~ 81602157 (+) True LOC110494696
TU1710167 other downstream 1541734 81828732 ~ 81833101 (+) False LOC110494698
TU1710572 other downstream 1876208 82163206 ~ 82169750 (+) False G1496351