RNA id: TCONS_00046457


Basic Information

Item Value
RNA id TCONS_00046457
length 7468
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_023482
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 25347503 ~ 25364775 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCATACACTATTTTAGCGTTTAGATTAGATGTCTTTTTATTAAAAGGGTAGCAAATTGTAACCTAGGCTGGCTTGCGCTGACTGCGCCCCATAATTAGCCTACTGACAAAAAGAAAAAGTCGTGCCCTTTGAAAAGTCTTTGAGTATTTCGCACCATggcattgcaaatgcataaaaacaCCCAAAACTGTCCAGTGTAATTTAAATCTGACTTTGTTTCCTTTGAAGTAAATACAGTACTAACCAAGTGTCTCTGACCTAGCAGGACCTGATGAGATTCAGCGCTACGCTTCATCATTTCAGTGATCCAGCTGCGTGGGTTGAACACTGATGCTCCGAATCTCTGATGCTGATGTTGGTTCATCGCCCTTGCGCTGTTGCTGCATTCTAGGATGTTGCGACAAGTGTTGCACGAAGGGCTCAGGACGTCATTCCACAAACTGGGCCACTTCGTCGCCAATCACCCGGTGTTTTTCGCCTCAGCGCCCGTGCTGATCTCAATCCTGCTGGGCGCGAGCTTCAGCAGATACCGCATTGAGGAAAACGTGGAGTACCTGTTAGCTCCCAAACACAGCCTGGCGAAGATCGAGGGGAACTTGGTGGATAGTTTGTTCCCAGTGAACCGGTCCAAACACACGCTTTACTCGGACCTGCAAACACCCGGGAGATATGGCCGGGTCATCGTGACTTCGCGCAGGGGGAGCGTGTTGGACCCTCATCACGTCAACTCAGTCTTAAAGCTTCACAACACCATCACTCAGATCCAGGTTCCTATGCTGGGATTTAACTACACATTTGCCCACCTCTGTCTGCTGGATGAGAGCAAGAGCTGCATTGTGGACGACATCCTGCGGGTTCTGGAAGAGATGAGATCGGCGCGGGCATCCAACCATTCAGTACCCCCTCTGCGTTATCCCATCACCAAGCTCAAAGATGGACGGGAGGCCTATATTGGTCACCAACTGGGTGGAGTCCTGGCAAGCGGAGGGAGAGACGGGGTGCGCTCTGCTCGAGCCCTTCAACTCACATACTACCTGCAGGCGGTCAGTCCATTGAATGAAGTGGTTGCGGCCAGCTGGGAGCTGCTGTTTTGCAGGGAGCTGGAGAACTTTGGAAAGGCTCATCCGGAGCTTAGTTTACACCCCTTCACCTCCTCTTCCCTTCAGAGGGACTTTCAAAGAACCAGTCGGGTATCAGAGCGGCCGCTGCTCTTCAGCCTGGCTGTGTGTCTCTCGCTGGCCATGCTGTGCTGTTCAATGCGAGACTGTGTGCGTACAAAGCCCTGGCTGGGTCTGCTGGCTCTGGTGACCGTCAGCCTTGCCACACTCACCTCTGCTGGCATCTTAAACCTCACTGGAGGGAAATACAACTCAACGTACCTGGGGATCCCTTTTGTCATGTTAGGTCATGGCTTGTTTGGCACATTTGAGATGCTGTCGTCTTGGCGACGGACCCGCGAGGACCAGCATGTGAAGGAGCGAGTTGCTGCTGTGTTCTCTGACTGTATGCTGCCCTTCACAGCTAGCACAGCCCTGCATGTAGTCACCTTTGGCATCGGAGCCAGTCCATTCACAAACATTGAAGCTGTGCGACTCTTCTGTCAGAACGCCTGTATCTCAGTCCTCTTCAACTACCTCTACATCCTCACCTTCTATGGCTCCAACCTGGTGTTCGCTGGATACCTGGAAAACAACTATCGTCACAGTTTGTTCTGCAGGCGTGTACCGAAGCCCGAGCTGCTGCAGCAGAAGCCAGCATGGTACCGCTTTCTTATGTACACACATTACAACGAGGAGGCCACGGAAGCAGGACCCCTGTGTGCTTATGAAAGCCACCTACTGGTAGCCTTTATGAAGCGGTACTACTGTGACTGGATCACTAATACCTATGTCAAACCATTCGTGGTTCTTTTCTACTTAGTCTATGTTTCCTTTGCCCTCATGGGCTACCTTCAGGTCAGCGAAGGGTCAGATCTTAGTAATGTGGTTGCCACAGAAACAAGCACTATAGCTTATACTCGTGCCCAACAGCGGTATTTCAGTAGTTACAGTCCTGTGATCGGCTTCTACATCTATGAGTCGATTGAGTACTGGAACACCAGTGTGCAAGAGGACCTACTAGAGTACATTAAAGGTTTTGAACGCATTTCCTGGTTCGAGAGTTACCTTAACTATCTTCATGGGCTGAACATCACTACTAGCCTGTCCCGCAGCAACTTTACAGAGCGCCTGCGCTCTGGCTTTCTGCGTCAACCCCGATACGTGCATTTCACAGATGATATCATCTTTGCCAAACGATCAGATGGGGAATTTGACGTGGTGGCCTCACGTATGTTTCTCATTGCtaaaacaactgaaaacaaaCGAGAGGAGATGTCTATCCTACTGGACACACTGAGGAAACTGTCATTGACCTCCAGGGTAAAATTCATCATCTTCAATCCATCCTTTGTGTATATGGACCGATATGCCTCATCAGTTGGAGCACCGCTGAAGAACTCTTGCATCGCTGCTCTCTTTCTGCTTTTCTTTTCCACCTTCTTGGCAGCTGACCCACTGGTGAATGCTTGGTTGACTGTGACAGTAGCCTCGGTTGAGTTTGGACTGGTTGGTTTCATGACGCTCTGGCGGGTAGAGTTGGACTGCGTCTCAGTACTGTGTTTGATCTACGGGGTGAACTATGCTGTGGACTCCAGTGCTCCACTGGTATCAGCATTTGCTCTAGGCCGTGAATCCACTCGAACACGCTGGGTGAAACTGGCTCTGGAGCAACATGGGGTCCCTGCCTTGCAGAGTTACTTGTGTTACGGGGCAGCTTTGCTTCCTCTTGCAGCCGTGCCCTCAAACCTCACCCGAACGCTCTTTAGGTGCCTCTTTCTCACCGCCATAATCACAGCCTTCCACTGTTTGGCCATTCTTCCTGTCCTGCTCACTTTCCTGCCTCCCTCCAAGAAAAAACGGCGAGAAAGAAAAAATGCTGCAGAAAACAGGGAAGAAATTGAGTGTGTGGAGATGGTGGACAGCACTCGTGTGGTTGATCAGATTACCACTGTCTGACCGCATGCCTAAAAGGGAGGCAGATAAGGATGTACAAGAAAGGAAAAGCCAAAACACCCCCAGGGGGCGATGGAAAGAGACCTGTGAAAGCTGGGCTTTGAAGTTTATGGGCAAAGATGACTTTTAAGTACTTTACAAGTGTACTTAAGCATAACAGGTACAAGCCTACATGTTAAACAAGGCTTTTGTTTGATCATAAATGCAGTTGACAAGTTAAAGATTGAGTTATTGATGCTGAGATGTATCATTGTGATGGCAAAAGCCTTATGCAGGTTTTGCTGCAGCTCAAATGAGAGCGAGGAAGGCCAGATGAACCACACTGCTGAACAGTTGCAGATAATCACAGAGGGAGGGCTCCTCTGGTCTGCAGTATTACAGCAGCAGTAAAGCGGAAACTGTAACAAGCTATTGCTCTGTCAAGGCATAGATAGAGACTTCTGATGCCCCAAGAACCATACAAATAAATTCAGGGGCCAAGCAGCCATATTTGTACCTGCTGATAGCCATGACTTTGATACACCCAGTGTCACCTCCTCCAAAAGGTTTGGTAACACCGTATATTTGTGGGATTATGGGATATAGTGATAGTATCTTTTCAAACTCCCAGATAAGATGAAAGCCACCTCCCCCACAATGACCAATGTGTTGGAGACATTTATGACTGGTCTTTTTAAATAGAacgtaaaaagagaaaaaaatggatTGGAGAAAGTGAAGGACAGAAGGGGGTGGGGATGAGCTTTAGAGATACACAGAAGCAGCAAGCCTCTGCAGACAGGTTGGTATGATGTGAAATTCTTTCAGGGTAATTCATACTCACAATTGAGTTGCATAGTGCATGTTTGATTTCAATTAGAGCATCACTTACCAATTAAGTCACAGTGGAGAGTATATTCTTTGAAGGATTCATGCCTGCTTCTCCTTGCTTATTCTGTTTGTCTCTAAAAATGCTGAAAATCACCTTGTCACAGACAATGCTCTTCATCAATATGCATGAGCTAGAGTCCCTTCGTTTTCACCCTCCTTTGCCCTctgtaaaaaaagagagagagaaagataaagAGACCTGGGGCAGAAATAGAGCAAGGGAAAGGAGCATCTGGCGATCAAATCTACTTTTCAAATTCTCCTCTAAGCCAAAAGCAACTGATGTCAAATCAGTCAAGAGGTTTAACAGACTGTATTTGTGTGGAGAAagagtctctttttttaaacatgtggACTGCGACAATGACATTTATTATGTGTTTGGCAGCTTGTGAATTGGTGCTGATTATAGCTACAAATATAAAGACCAAGAAAAGGGAAAATACATACACATGATCGGATACTTTCGCAATTATAATCTGGCATCTGCAAAATAGTTTTTGATCATTGCCCATCTACTTGACCACTAGAGCTCACCTACTCCATTCTCTTCCTAAGTAGCACTTCAGCCTGCAATCATCTGGAGATATTCCCACACCTATATGGTTAATTAAATCAGCCCATATATATTTACCATGCTAAAGCCTCTCACAGCTGATCTTACTGATCTCCGTGCAGTAGCCAGTACTCAATACTCTCTCTGACTAATCTAAGGATAGTGCTCTGAAAGATTCTCTCAACAATTTAATTAAAGTCTTTTACGATCTCTGAGTGACCCCAGATCAGCAACCCAACAGAAACTTTGACTGATGTAATGTGAGTGTTCAGACAGCTGTCTGATCTCAGAACAGTGCTGTAAATAGGCCTCTTGGTAATTTCTGAAAAACTCTGAAACACATCAATTCATGCTTTTTGTTCAGCACTATTTTGACAGGCCCAAATCATTTATACTTAATTCATATGTTTATTTATCTAAGTTTTCTTAAATTAAGATAGATTTGCACGATACGAAAAACAGCATAATATATTAAAGCTTGTTTTCAAAGaataaatcagttttattattttttagtttttaatttaaagcacAAGTGAGCAAAATATTAAGTTTGCTAATGGAATAAGAACATCAGTCTTTTCCAAGAACGTCTTATAAAACCTtaataattaaagggatagtttaccccaaaatgtaccttaccatttactctccctcatgtggcttcaacatttattatttgctttcttctgttgaacacagaagaagatattttggaaaatgttggtTGCTAACACCTATAGATATTTACATCAGATGTCGCCTACGTTGTTGTTGTCGattggaaggaatgtgtcaatacagccaccattttagtacagggtagcgctccattGAAataaatgtgggaccaaggtgtagTGGAGGGCTGGCCATCTGGAGCCATAGatataaacacatatacatatatctatgattgggagttttcctggtgttcagtatgcaaatattttttaaattatgaaaattcaaaTTTTACATGACTTTTCTCTATTACTGGATAAGTGATCACACAGGCATTGCTGACAATGAGCATGTGTTTATGTGCacggaaatgtattatcctccctcaaTGTTAAATTCCACTTCTAATCCTAACGGAGGGAGCAATTCCTTtatgaatgaatctccattatgaatGACTCGTGTGATATTCCTTCGTCTCAATGTGCAAATCTACCTTTTTCATCTAAATGGtatgaaaattataatattaaattgaGGTGCAGGCACTGTTATCAGACACCcttataagttacttcaaaaactaacattaataataattgaagTTTCTGGTAGCGCAGAATCTttcctgcaggcacaggatgtcaatatgacgtcatattgacgttgtaccccactgtcgtggggacgttggatggtgattggaaatgaaaatcaggttgacatcagaacccgaCATCAGGCccatgtcaatgtccaacatccaacgtAAAATCAACCcgatatcaacgtctaatcatgttacaccttgacgttgtgtggacgttatcactatgacatctatcagacgttgaattttggtcactttccaacacaacaaatcaaccaaatatcaatgtaatttgacgtcgttattggacatcaaaataacgttgtccttagacgctggctagacattgaattttgttcacctgatgtcatgacctaaatctaacctaatattaacgtcataTGATGCTGTGTGCCTGCTTGgttgttgtcatattttatttacattgtttgctgattttttttaacaaaactagcataagcctagaatttagtgcaGGTTGgggctactttgccttatggttggtgcagtaagtgactgtattatcatcaataacatgatttgtttagcacaaaagattgtaactaataaaaatagtaaaaaaacgaaatcttacctaTAAAATGCTCTGCCTTTATGCTTTATCTAAACCCGTACCCAGctcaaaagtccagcatcttcagattggctttagtcttgacaaGTGCGGTTGAAGGATTTTGTTCTGGGAGCACTGTActaatatggcggcgctattgatgcatgcaatatctagtgtataagTCTATGGCCAGCACCCATCAACTTTAATagtaggaaaataaaaaaaaattcaatgggtctgtcagtgggtgccagcaaacagcatttttcagaataaatatatttttgtagaaagaaactgaaataggTTTTGATCAAAAAAAGGGTGGGAAAATTATccctttaattcaatttaatcagTATATCCATCTATCTTCATAGTCTTCATAGTCAGCAGTgcggggttttttttttcttcttttttgtggGTGAAATGTTTCTGTTATCTGTACTTGACTGTACTTGAAAGTGTGTGCCCTTAAAGAGAAATATCATGAACCTAGAATGATCTTCATTTTATAAATGAAGCTTAAAAGTTCATGTCTAATATGGTCTCTTATTTGTCCTCCTTGACTTGTCAAAACTGCTGGATTTGAACATTCAATGCAAAGTTGTTCACATACCTCTGCCTTCATACAGATTCACTCAGGCTtacatcattttattttgtttgtataaCACCTCCACTATTATATTCAGTCCAAATGTGATTGCTGTGAAGCAGTATTGGCACAAGGCCCTTTGAAGATGTCAAAGCCAGTGGGAAGAAtgagtgaaaaaaaatatatgctaCACCCACACTGgtttgcacacatacacaaatttaGCTTACAGTACATGCATTCTACCTGACTGATATGCCTCTGGAgatgattgttgttgttgttttttaagtttgTTTCTATGAATTTcagaagaattaaaataaaagaggGTGAATTTAAATCATCAtttgtttgtgttattattattatttttattattgttattattattattattattattaggataaATTGTTATGCTCCATTTCAGTTTAGCAGAATGCTGCCATCTAGTGTTCATAACATTTTTATGACAAGTAGACG

Function

GO:

id name namespace
GO:0050890 cognition biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061220-1 Predicted to be involved in chemical synaptic transmission and cognition. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and synapse. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human PTCHD1 (patched domain containing 1).

Ensembl:

ensembl_id ENSDART00000186814

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047202 lncRNA downstream 99881 25245199 ~ 25247622 (-) False XLOC_023480
TCONS_00046453 lncRNA downstream 102865 25240243 ~ 25244638 (-) True XLOC_023479
TCONS_00047201 lncRNA downstream 321404 25008317 ~ 25026099 (-) False XLOC_023476
TCONS_00046443 lncRNA downstream 321404 25023425 ~ 25026099 (-) True XLOC_023476
TCONS_00046437 lncRNA downstream 364546 24976336 ~ 24982957 (-) True XLOC_023474
TCONS_00046461 lncRNA upstream 44789 25408604 ~ 25412087 (-) False XLOC_023483
TCONS_00047203 lncRNA upstream 386821 25750636 ~ 25754146 (-) True XLOC_023487
TCONS_00047204 lncRNA upstream 667433 26031248 ~ 26032271 (-) True XLOC_023490
TCONS_00046867 lncRNA upstream 868885 26232700 ~ 26236578 (-) False XLOC_023491
TCONS_00046866 lncRNA upstream 868885 26232700 ~ 26236578 (-) True XLOC_023491
TCONS_00046456 mRNA downstream 45792 25285758 ~ 25301711 (-) True XLOC_023481
TCONS_00046455 mRNA downstream 90833 25245706 ~ 25256670 (-) True XLOC_023480
TCONS_00046454 mRNA downstream 91273 25244946 ~ 25256230 (-) False XLOC_023480
TCONS_00046452 mRNA downstream 102866 25236381 ~ 25244637 (-) False XLOC_023479
TCONS_00046450 mRNA downstream 160608 25173470 ~ 25186895 (-) False XLOC_023478
TCONS_00046459 mRNA upstream 40543 25404358 ~ 25442342 (-) False XLOC_023483
TCONS_00046460 mRNA upstream 40544 25404359 ~ 25428176 (-) False XLOC_023483
TCONS_00046462 mRNA upstream 51325 25415140 ~ 25442346 (-) True XLOC_023483
TCONS_00046463 mRNA upstream 84096 25447911 ~ 25461267 (-) True XLOC_023484
TCONS_00046464 mRNA upstream 121449 25485264 ~ 25574967 (-) False XLOC_023485
TCONS_00046441 other downstream 323480 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046414 other downstream 1184393 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other downstream 1200628 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046409 other downstream 1229108 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046400 other downstream 1370218 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046479 other upstream 995424 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046480 other upstream 997931 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046487 other upstream 1111367 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 1145073 26508888 ~ 26534654 (-) False XLOC_023502
TCONS_00046542 other upstream 3663613 29027428 ~ 29028548 (-) False XLOC_023535

Expression Profile

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