RNA id: trnak-cuu-22


Basic Information

Item Value
RNA id trnak-cuu-22
length 73
RNA type mRNA
GC content 0.56
exon number 1
gene id trnak-cuu-22
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80425841 ~ 80425913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

Acctagctagctcagtcggtagagcatgagactcttaatctcagggtcgtgggttcgatccccacgttgggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1708394 lncRNA upstream 46178 80378149 ~ 80379663 (+) True G1494398
TU1708366 lncRNA upstream 50183 80375393 ~ 80375658 (+) True G1494375
TU1708364 lncRNA upstream 53651 80368430 ~ 80372190 (+) True G1494373
TU1708339 lncRNA upstream 59956 80365279 ~ 80365885 (+) True G1494348
TU1708337 lncRNA upstream 61478 80362152 ~ 80364363 (+) True G1494347
TU1708493 lncRNA downstream 62792 80488705 ~ 80490659 (+) True trnak-cuu-68
TU1708496 lncRNA downstream 68934 80494847 ~ 80495322 (+) True G1494489
TU1708510 lncRNA downstream 78099 80504012 ~ 80504558 (+) True G1494503
TU1708576 lncRNA downstream 159158 80585071 ~ 80592007 (+) True G1494562
TU1708589 lncRNA downstream 169473 80595386 ~ 80595597 (+) True G1494575
trnak-cuu-21 mRNA upstream 909 80424860 ~ 80424932 (+) True trnak-cuu-21
trnak-cuu-20 mRNA upstream 1891 80423878 ~ 80423950 (+) True trnak-cuu-20
XR_005037239.1 mRNA upstream 138843 80286945 ~ 80286998 (+) True LOC118940652
LOC110494682 mRNA upstream 378778 80038726 ~ 80047063 (+) True LOC110494682
XR_002469304.2 mRNA upstream 384090 80025090 ~ 80041751 (+) True LOC110494679
trnak-cuu-23 mRNA downstream 1703 80427616 ~ 80427688 (+) True trnak-cuu-23
trnak-cuu-24 mRNA downstream 3191 80429104 ~ 80429176 (+) True trnak-cuu-24
trnak-cuu-25 mRNA downstream 7445 80433358 ~ 80433430 (+) True trnak-cuu-25
trnak-cuu-26 mRNA downstream 8423 80434336 ~ 80434408 (+) True trnak-cuu-26
trnak-cuu-27 mRNA downstream 9401 80435314 ~ 80435386 (+) True trnak-cuu-27
TU1707042 other upstream 1040404 79382645 ~ 79385437 (+) False tusc2
TU1707040 other upstream 1040404 79383795 ~ 79385437 (+) False tusc2
TU1707041 other upstream 1040404 79383795 ~ 79385437 (+) True tusc2
TU1707053 other upstream 1089769 79329619 ~ 79336072 (+) True LOC110493267
TU1706085 other upstream 1650114 78773229 ~ 78775727 (+) True G1492310
TU1709446 other downstream 867527 81293440 ~ 81293926 (+) True G1495346
TU1709462 other downstream 911104 81337017 ~ 81338163 (+) True G1495362
TU1709526 other downstream 1006298 81432211 ~ 81602157 (+) True LOC110494696
TU1710167 other downstream 1402819 81828732 ~ 81833101 (+) False LOC110494698
TU1710572 other downstream 1737293 82163206 ~ 82169750 (+) False G1496351