RNA id: TCONS_00046459


Basic Information

Item Value
RNA id TCONS_00046459
length 2634
RNA type mRNA
GC content 0.47
exon number 22
gene id XLOC_023483
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 25404358 ~ 25442346 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATAGCTGTGAACGGGCGGAAGTCATGATTGCCGACCGCGTTCTTGAAGAAAGATGCTGTTTTTATTCCTGTTGATTTGCAGCCAAGTCCCTGTAGTCTTTCTTTACAGCCTCCACAAATGTGTATCACAAAAAGCAAGCAATGAAGACCTCTGTCTAGGCCCACACTGCGTTGAAGCAGCCGGATCTATCCTGAGTAAGATGGATCAGTCGGTGGACCCGTGCGATGACTTCTACCAGTACGCATGCGGAGGCTGGCTTAGGGAAAACCCCATTCCCGAAGACTCATCAAGCTATGGGATTTACCCATGGCTCAGACAGAACGTAGACCTCAAGCTGAAAGAGTTATTAGAGCAGCCCGTGAGAAGTGGAGATATTGAGGCTGTGAAGAAGGCCAAAGTCCTGTACGCATCCTGCATGAATGAATCTGCGCTGGAGATTGAGGATGCCAATCCTCTGCTGAAGAATCTAAAGCAGAAAGAATTCCGCTGGCCAGTTTTGGGTGATGCACTGGGCTCTTCCTCACGCTGGGTGGAGTCTCAGTTTAACCTGCTGGAGACATTGGCACAGATTCGCAGTCAGCACAGCAAGTCTGTTCTCATCCGGCTTTTTGTCGCTCCTGATGACAAGAATTCTAACCAGTACATCATCAAGcTGGACCAAGCCTCTTTGTCCCTGTCATCCAGAGAAGATTACATCACCAACACAACGGAGGCACAAATGTACCGAGAGGCACTTTTAAGGCTGATGGTTGACGTTTCTGTCATGCTTGGAGCAAGTGAGCAGGCTGCTGAGGCTCAGATGAAATCGGTACTTGATTTTGAGATGAAACTTGCACAGATCGTGATCCCTTATGAGAACCGCACTAGTGAGAACATGTACAACAAGTACAGCTTGTCTAAACTGCAGCGCACTGTTCCAGATTTTAACTGGCTGGGTTTCGTCAGAGCAGTGATTGACACAGAGTTGTACCCGGATCTGAAAATCTCCTCTTCAGAGCAGGTGATCGTACGTGCTCCACAGTACTTTAAAGACCTCTTCAAACTCATCAACGCCACAGACACCAGGACAGTTGCCAATTACGTCATATGGAGATCGGTTTTCTCCCGAATCACCACTTTGAGTAGACGATTTCTCTACAGATACCTGGACTTTGCTCGGGTTACTACAGGGACCACCTCTCTGACCCCTCGCTGGGACAAGTGTGTCAATTATGTTGAAAACACACTCATCTATGCCGCTGGTAGGCTCTTTGTTGATAAGCATTTCCAGGAGGACAAGAAGCACATGATGGAGGAATTGATCAATGGCATCAGATGGGCATTTATTGACATACtagaaaaagagaatgaatggatggatgaagaaaCAAAGAGAAAAGCGATAGATAAGGCTCATGCAGTTCTACCAAAAGTGGGTTACCCAGACTTCATTTTAAATGACACCTATATTAACGAAGACATCAAAAggTTGGCGTTCACTATGACTGACTACTTTGGAAACGTCATGCAGACTCTGAAGTTCATCGCTCAGTCTGATATCGGCTGGCTGAGGAAAACAGTCCCACGCACAGAGTGGTTCACCAACCCGACTACAGTCAATGCTTTCTACAGCTCCTCCACCAACCAGATCAGATTCCCTGCAGGAGAACTTCAGAAGCCTTTTTTCTGGGGACTTAACTATCCTCGATCCTTGAGCTATGGAGCGATTGGTGTAATTGTGGGCCACGAATTGACCCATGGCTTTGATAACAATGGCAGGAAATATGACAAAGATGGAAACCTGGACCAGTGGTGGAGCAACTCCTCAATCAACCGCTTCACTGAAAAGACACAGTGCATGATTGACCAATACAACAGTTACTACTGGAAGGAGGCTGGGCTAAATGTCAAGGGGAAGAGGACTCTGGCGGAGAACATTGCTGACAATGGAGGGATCAGAGAATCTTTCAGGGCCTACAGGAGATGGGTCGAGAAAGAGAGAGGAGGTGTCGAGGAGCCTCTCCTGCCTGGTGTGGGTCTGACCCATAACCAGCTGTTCTTCCTCAGTTATGCTCATGTTCGCTGTAATGCCTACAGACCAGAAGCGGCTCGTGATCAGATCCAGAGTGGAGCTCACAGCCCTCCTAAATATAGGGTTATTGGAGCGATGAGCAACTTTGAAGAGTTCCGTAAAGCTTTTAACTGCCCTGAGACGTCAATCATGAACAGGGGGGCGGAGTCCTGTCGAGTGTGGTAATGTGAAGACTTCGATCACAGCACAACCCAAACCTCCTGATTTTGTCCCACAGGGGCCGTGCTGACCAATGAATGGCCCTTAGCCGTCAGCCACTGGAAAACTGTAGAAAATACATGCAGTGCCTACAACACCTGAAAGCTTTCAAACACATCTGCAGCTTTGTTTTTACTGTCTGACCTCAATTGAAATGTACAAATAGCAACACGCGGACCACAAAAATTCCCTGAAGGCCTTCCTTCGGTTCATCACTGCTTTTTTATTCATACAAATTAGGCCGCACTGTCGCTTTAAGAGTgctataaattattattgttgttgatgttggTTAAAGTTGGTAATTGTCTCTTTTTATTGTATTGAAAACgtgagtaaataatgatttttttttctgatgtgt

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-030103-2 Predicted to enable metalloendopeptidase activity. Predicted to be involved in protein processing. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lapillus. Human ortholog(s) of this gene implicated in X-linked dominant hypophosphatemic rickets. Orthologous to human PHEX (phosphate regulating endopeptidase homolog X-linked).

Ensembl:

ensembl_id ENSDART00000177140

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047202 lncRNA downstream 156736 25245199 ~ 25247622 (-) False XLOC_023480
TCONS_00046453 lncRNA downstream 159720 25240243 ~ 25244638 (-) True XLOC_023479
TCONS_00047201 lncRNA downstream 378259 25008317 ~ 25026099 (-) False XLOC_023476
TCONS_00046443 lncRNA downstream 378259 25023425 ~ 25026099 (-) True XLOC_023476
TCONS_00046437 lncRNA downstream 421401 24976336 ~ 24982957 (-) True XLOC_023474
TCONS_00047203 lncRNA upstream 308294 25750636 ~ 25754146 (-) True XLOC_023487
TCONS_00047204 lncRNA upstream 588906 26031248 ~ 26032271 (-) True XLOC_023490
TCONS_00046867 lncRNA upstream 790358 26232700 ~ 26236578 (-) False XLOC_023491
TCONS_00046866 lncRNA upstream 790358 26232700 ~ 26236578 (-) True XLOC_023491
TCONS_00047205 lncRNA upstream 912354 26354696 ~ 26368841 (-) False XLOC_023496
TCONS_00046458 mRNA downstream 39583 25349823 ~ 25364775 (-) True XLOC_023482
TCONS_00046457 mRNA downstream 40543 25347503 ~ 25363815 (-) False XLOC_023482
TCONS_00046456 mRNA downstream 102647 25285758 ~ 25301711 (-) True XLOC_023481
TCONS_00046455 mRNA downstream 147688 25245706 ~ 25256670 (-) True XLOC_023480
TCONS_00046454 mRNA downstream 148128 25244946 ~ 25256230 (-) False XLOC_023480
TCONS_00046463 mRNA upstream 5569 25447911 ~ 25461267 (-) True XLOC_023484
TCONS_00046464 mRNA upstream 42922 25485264 ~ 25574967 (-) False XLOC_023485
TCONS_00046466 mRNA upstream 70695 25513037 ~ 25673405 (-) False XLOC_023485
TCONS_00046465 mRNA upstream 70695 25513037 ~ 25673405 (-) False XLOC_023485
TCONS_00046467 mRNA upstream 70698 25513040 ~ 25673442 (-) True XLOC_023485
TCONS_00046441 other downstream 380335 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046414 other downstream 1241248 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other downstream 1257483 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046409 other downstream 1285963 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046400 other downstream 1427073 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046479 other upstream 916897 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046480 other upstream 919404 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046487 other upstream 1032840 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 1066546 26508888 ~ 26534654 (-) False XLOC_023502
TCONS_00046542 other upstream 3585086 29027428 ~ 29028548 (-) False XLOC_023535

Expression Profile

//