RNA id: trnak-cuu-31


Basic Information

Item Value
RNA id trnak-cuu-31
length 73
RNA type mRNA
GC content 0.56
exon number 1
gene id trnak-cuu-31
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80443669 ~ 80443741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

Acctagctagctcagtcggtagagcatgagactcttaatctcagggtcgtgggttcgagccccacgttgggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1708394 lncRNA upstream 64006 80378149 ~ 80379663 (+) True G1494398
TU1708366 lncRNA upstream 68011 80375393 ~ 80375658 (+) True G1494375
TU1708364 lncRNA upstream 71479 80368430 ~ 80372190 (+) True G1494373
TU1708339 lncRNA upstream 77784 80365279 ~ 80365885 (+) True G1494348
TU1708337 lncRNA upstream 79306 80362152 ~ 80364363 (+) True G1494347
TU1708493 lncRNA downstream 44964 80488705 ~ 80490659 (+) True trnak-cuu-68
TU1708496 lncRNA downstream 51106 80494847 ~ 80495322 (+) True G1494489
TU1708510 lncRNA downstream 60271 80504012 ~ 80504558 (+) True G1494503
TU1708576 lncRNA downstream 141330 80585071 ~ 80592007 (+) True G1494562
TU1708589 lncRNA downstream 151645 80595386 ~ 80595597 (+) True G1494575
trnak-cuu-30 mRNA upstream 2392 80441205 ~ 80441277 (+) True trnak-cuu-30
trnak-cuu-29 mRNA upstream 4335 80439262 ~ 80439334 (+) True trnak-cuu-29
trnak-cuu-28 mRNA upstream 5314 80438283 ~ 80438355 (+) True trnak-cuu-28
trnat-cgu-55 mRNA upstream 6799 80436798 ~ 80436870 (+) True trnat-cgu-55
trnak-cuu-27 mRNA upstream 8283 80435314 ~ 80435386 (+) True trnak-cuu-27
trnak-cuu-32 mRNA downstream 907 80444648 ~ 80444720 (+) True trnak-cuu-32
trnak-cuu-33 mRNA downstream 2911 80446652 ~ 80446724 (+) True trnak-cuu-33
trnak-cuu-34 mRNA downstream 4397 80448138 ~ 80448210 (+) True trnak-cuu-34
trnak-cuu-35 mRNA downstream 5375 80449116 ~ 80449188 (+) True trnak-cuu-35
trnak-cuu-36 mRNA downstream 6309 80450050 ~ 80450122 (+) True trnak-cuu-36
TU1707042 other upstream 1058232 79382645 ~ 79385437 (+) False tusc2
TU1707040 other upstream 1058232 79383795 ~ 79385437 (+) False tusc2
TU1707041 other upstream 1058232 79383795 ~ 79385437 (+) True tusc2
TU1707053 other upstream 1107597 79329619 ~ 79336072 (+) True LOC110493267
TU1706085 other upstream 1667942 78773229 ~ 78775727 (+) True G1492310
TU1709446 other downstream 849699 81293440 ~ 81293926 (+) True G1495346
TU1709462 other downstream 893276 81337017 ~ 81338163 (+) True G1495362
TU1709526 other downstream 988470 81432211 ~ 81602157 (+) True LOC110494696
TU1710167 other downstream 1384991 81828732 ~ 81833101 (+) False LOC110494698
TU1710572 other downstream 1719465 82163206 ~ 82169750 (+) False G1496351