RNA id: TCONS_00046461


Basic Information

Item Value
RNA id TCONS_00046461
length 879
lncRNA type retained_intron
GC content 0.40
exon number 8
gene id XLOC_023483
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 25404358 ~ 25442346 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGTTTAGCAGATATTCAGCTTCATTACTTTCAAATATACAATGAATAAAAGAAATGTGAATTATGATTACAGTTGTTTTCTTactgattttttttcagcagataTTACTTCAGTCATAACAAGATTGATTTGGtttttgtctccatctagtggcACTTATCATGAACAAAACTTAAAACGTTGGATATTTTTATGctatgatttaaaaatgttttttatcttttatgtAGATGGAGGAATTGATCAATGGCATCAGATGGGCATTTATTGACATACtagaaaaagagaatgaatggatggatgaagaaaCAAAGAGAAAAGCGATAGATAAGGCTCATGCAGTTCTACCAAAAGTGGGTTACCCAGACTTCATTTTAAATGACACCTATATTAACGAAGACATCAAAAggTTGGCGTTCACTATGACTGACTACTTTGGAAACGTCATGCAGACTCTGAAGTTCATCGCTCAGTCTGATATCGGCTGGCTGAGGAAAACAGTCCCACGCACAGAGTGGTTCACCAACCCGACTACAGTCAATGCTTTCTACAGCTCCTCCACCAACCAGATCAGATTCCCTGCAGGAGAACTTCAGAAGCCTTTTTTCTGGGGACTTAACTATCCTCGATCCTTGAGCTATGGAGCGATTGGTGTAATTGTGGGCCACGAATTGACCCATGGCTTTGATAACAATGGCAGGAAATATGACAAAGATGGAAACCTGGACCAGTGGTGGAGCAACTCCTCAATCAACCGCTTCACTGAAAAGACACAGTGCATGATTGACCAATACAACAGTTACTACTGGAAGGAGGCTGGGCTAAATGTCAAGGGGAAGAGGACTCTGGCGGAGAACATTGCTGACAATGGAGGGATC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-030103-2 Predicted to enable metalloendopeptidase activity. Predicted to be involved in protein processing. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lapillus. Human ortholog(s) of this gene implicated in X-linked dominant hypophosphatemic rickets. Orthologous to human PHEX (phosphate regulating endopeptidase homolog X-linked).

Ensembl:

ensembl_id ENSDART00000136183

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047202 lncRNA downstream 160982 25245199 ~ 25247622 (-) False XLOC_023480
TCONS_00046453 lncRNA downstream 163966 25240243 ~ 25244638 (-) True XLOC_023479
TCONS_00047201 lncRNA downstream 382505 25008317 ~ 25026099 (-) False XLOC_023476
TCONS_00046443 lncRNA downstream 382505 25023425 ~ 25026099 (-) True XLOC_023476
TCONS_00046437 lncRNA downstream 425647 24976336 ~ 24982957 (-) True XLOC_023474
TCONS_00047203 lncRNA upstream 338549 25750636 ~ 25754146 (-) True XLOC_023487
TCONS_00047204 lncRNA upstream 619161 26031248 ~ 26032271 (-) True XLOC_023490
TCONS_00046867 lncRNA upstream 820613 26232700 ~ 26236578 (-) False XLOC_023491
TCONS_00046866 lncRNA upstream 820613 26232700 ~ 26236578 (-) True XLOC_023491
TCONS_00047205 lncRNA upstream 942609 26354696 ~ 26368841 (-) False XLOC_023496
TCONS_00046458 mRNA downstream 43829 25349823 ~ 25364775 (-) True XLOC_023482
TCONS_00046457 mRNA downstream 44789 25347503 ~ 25363815 (-) False XLOC_023482
TCONS_00046456 mRNA downstream 106893 25285758 ~ 25301711 (-) True XLOC_023481
TCONS_00046455 mRNA downstream 151934 25245706 ~ 25256670 (-) True XLOC_023480
TCONS_00046454 mRNA downstream 152374 25244946 ~ 25256230 (-) False XLOC_023480
TCONS_00046462 mRNA upstream 3053 25415140 ~ 25442346 (-) True XLOC_023483
TCONS_00046463 mRNA upstream 35824 25447911 ~ 25461267 (-) True XLOC_023484
TCONS_00046464 mRNA upstream 73177 25485264 ~ 25574967 (-) False XLOC_023485
TCONS_00046466 mRNA upstream 100950 25513037 ~ 25673405 (-) False XLOC_023485
TCONS_00046465 mRNA upstream 100950 25513037 ~ 25673405 (-) False XLOC_023485
TCONS_00046441 other downstream 384581 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046414 other downstream 1245494 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other downstream 1261729 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046409 other downstream 1290209 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046400 other downstream 1431319 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046479 other upstream 947152 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046480 other upstream 949659 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046487 other upstream 1063095 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 1096801 26508888 ~ 26534654 (-) False XLOC_023502
TCONS_00046542 other upstream 3615341 29027428 ~ 29028548 (-) False XLOC_023535

Expression Profile

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