RNA id: XM_036950740.1


Basic Information

Item Value
RNA id XM_036950740.1
length 5633
RNA type mRNA
GC content 0.51
exon number 21
gene id LOC110494670
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80554017 ~ 80581837 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCCCGAGTGAGTGTGTGATCGCTTGCTTTCATGCGTGAGTGTGAAAATTGCTTTCCTTCAAGTGACTTCAGATGAGAATCTCAAGCGAGAAAAAAGCAATATTTGATATGGCATAggacagaaaaaaaaaaatagattgtGAAATCATAACCAGTGCGTACTTCCTTGCGGTAGGCGGGGCATGAGGAGTACATGCGGAATTGTGCTCCAGGTGTGCGTCTTGTCCCAGGATACATACAGAAAGTTCACATGGAGTTTCTGAAATTGCTCCATACATCAACACGTGCACAGAACAGAACTGGACCGCATGTAGCCTAGTGCCACAGACAACATCAAAGACAGCCAGTGTTGTGTCTGGGAATCAAGACTTTAGTTATCTGGAGACACGGCATTATACACACTCAGCTCCTGCTGATCACCAGAATGTTCAGGAGGAGATGTTATCGTGGTTGTAGGTAACAGGCAGTAGCAGTGGAGATGGTCCCCTGGGCCAACTTCCTGGTGACATCCATATGGATACAGACGCTCAAAGCCTCAGGGCTGGACACCTGTCCCAGGACTCCTCGCAAGGAGGTGGATTTCACCTTTAACTACTCAATACCCCACTTCCAGACAGCCAAACCCATCCAGAACATAGTGGTCAACCTGTACATGCCTGAGGTTTATGTGGCTTCTCAGAATGTGATTGAGGCAGTGAGTGGAGAGCTCAGTAAGTTATGGGAGCTGAGGACAGGCCCAGTGGGCAGCCCAGAGTGTCAGACCTGTGGCCTGTGTGACATCGAGGCCGATCTTGAGGACTCAGTAGACACGGACAATGAGGTCCTGCTCTTGGACCCATCACCTTATCTTAACTCTCTGTACTCCTGTGGGAGTTCTCAGCATGGGATCTGCCATTTACATGAACTTAGCTTTAATGATACCCCACCTAAATCTGAATGTCTCTTCAGGAAGGATGCTAACTCTCCGTCCCTTTGCCCTGACTGCCTGGCCAGCCCCCTGGGCACTGAGGTCATCATCGTGGAGCAAGGCCACACAGCCTACTTCTTTGTAGCGGCTACACTCAATGAGCGTGTGGCACAGAGGTACGGCAGACCGTCCTTATCGGTGCGCCGGCCACTGTCGACCCTGGATGGCTTTGAGATGGTCATGCAGGGTCTGACTGTGCTCCCTAAACTACAGAACTCCTACCAGATCGACTACATCTACAGCTTCTCCACACAGGACTATGTCTACTTCCTGTCTGTCCAGAGGGAGAACTTCCTGGACTCATATCAGACTCGGTTGGGCCGTCTCCCGGTGAAGGACACGGAAGCGTGGCTGTACCGTGAGGTGGTGCTGGAGTGTCGCTTTGAGCCCAAACGCaggcggaggaggagggggggggacaaTATTTTCCAGGACGTGGTGTATAACAGGCTGCAGGCGGCCCACTTCAGCCGGGCAGGGAAGGAGCTGGCAGAGGAGCTGGGGGTGGGGGAGAAGGATGACATTCTCTATGGAGTGTTTGCAGTGACAGATGGCTCTGGGAGGCCCTACAGTAACTCAGCCATGTGTGCCTTCCCCATGCCCAACGTGAACAGGGCCATCGACCGGGGAGCAGAGGACTGCTGCAGGTCCAGCACAGAGCAGCTCTCCAGGGGGCTCTGCCACTTCCAGCTCTGCGAGAGCTGCCCTCATGAGAGCTCCGACAACAACGCTACATGCATGGCCAAGTCCACCCTGGTGTCTAAGCCATACTACAGGTTGGACCTCTTCAACAGGTACATGAACAACATCCTGCTCACCTCAGTACTGGTCACCATCATCGGGAACAACACTGTGGCACACATTGGCACCAAGGACGGCAGGCTGTTGCAgCTCATCCTGAGGAGGTCAAATCCCATCATCTTCGCCAACTATTCTctgggagaggacaatgaggtgTCCAGGAAAGCTGCTGTGCAATCTAACGAGTCCTTGCTCTTTGTGGTTGGAAATAAGaTGTTCAGTGTGTCTCCTAAAGGACCAGGATGTAAACACTTCCTGACCTGCTCCACGTGTCTGATGGCGCCCAGGTTCATAGGGTGTGGCTGGTGTTCGGGGGTGTGCTCCAGGCAGGAGGAATGCCTCATACAGTGGAAGAGTGAGTCCTGTCCTCCCGTCATCACAAAGTTTTTCCCAAAGACGGCTCCCCCTGATGGTGAGACAGAGCTAAGGCTGTGTGGCTGGGAGTTCCAGTCTCCTCTACGACCAGCCATCATCAGCGAGGAGACCCACCTGGTGCGAGTGGGAGCGACTCCCTGCACTGTGCTGTCAGAGAAGAGCAATAGTACACAGCTGGTGTGTAGCATTCACCCTAAGGTTCCGGGTCCATCCCAGGATCTCAACATCACCGTGGCGGTGCATGAGGGGAAGGTGGAGGGACGCTACTCAGTTGAAGGCCAGGACCAAATGATAGGGTTCACTTTTGTGGAGCCAAGTATCACAGAAATCACTCCTGACTATGGGCCTCAAATAGGGGGAACCTTGGTCACAGTGACAGGGCCTCACTTGAACGCTGGGATGATAAAGACTGTGTCTATAGGAGACCAGGACTGCCCCATCAAGAGTGTCACTGAGGGTACTGGGACCATGTCCTCCATAGTCTGCCTGTCCAAAGGGTTGGCAGTGGTGAAGAAGGTGCCTGTCAGGGTTTTCATTGACAAATCCCAAGTGGCTACTACCAAGATGTTTCACTACAAGAAGAACCCTGTGATCACTGTGATACAGCCAGTCTGCAGCTTCAGAAGTGGATCCAAAATCATCATCAAAGGCAGTAATCTGGACTCTGCGTACAACACTGTGATCCGCTACAAATCCCACAACCCCTCACAGAAGCTTCTGCAGCGTGTCTGCAACGGCACAGCAACCCCCACACATATGGAGTGCTTCGCCCCTGTTTTCCCCAGGAATGAGACCGACAAGGGCATCATCACTATCAACATGGACGGGGCCAACAAACTTGTGGTGAAGCGCTTCGAATACCAACCAGACGCCAGCATCACCCCCTTTGAGTACGAAGGCAACGTACTGAGCCTGAGCCCTGGACAGACTGAGGTTTCCCTGCATCACAACAAGCTGAGCATGGTGAGTCCCTGTATGGAGATTACAATGAGCATTGGAGGTGTGGACTGTGGTGTCCAGGTACTGGACAACGAACTGACCTGCAGGATCCCCAAGAATCTCATCATCCCCAGTGAAGGGTCACCTGTCAGGGTGTCTGTGAATGGGCATGCCTATGAGGTGGGCACTGTGGTCTTCTTCAGCAACCCTGTCAACACAGTGGGTGTGGTGATGGGGATCTTTGCTGCATTGTGCGTTGGCGCTGCCCTGGCTTTCATCGCCATGACACATGTGAGGAGGAAAAAGAAAGAAATTTCAGCCAATGTAGAGACTCGTTTAGCAAGGATGTCCGTCCGCAGAAGAATAAGCAGCAACCCTGACCTATCGCCCACAGGTGACTATAGACGAGACCTGTCCTCCCAGCCGAGCCAGACGACAGGCTCAGGAGGGATAATCTTCCATGGCCTGGTCTACACTGCCACCTTTGACCCCTTGGCCGTGCCTCTGATCTCAGTGGACACCCTGAAACCTGAGCTcctggaggaggtcagagacgtcCTGATCCCAGCCGACACTGTCAACATTCACCGCAACCAGATCATTGGCAAAGGTAATTTTGGGACTGTGTACCATGGTTACCTAACAGACAACAAGAACCAAGAACAGTTAATCCACTGTGCTGTTAAAGCATTGAACAggATCACGGCCCTGGAGGAGGTGGAGCAGTTCCTGAGAGAGGGCATCCTGATGAAGGAGTTCCACCACAACAACGTTCTGTCCCTGCTGGGCATTCTTCTGCCTCAGGAGGGGCTCCCCCTGGTGGTGCTGCCCTTTATGAAATATGGAGACCTGCGCCACTTTATACGCTGTGAAAGGAGGaacCCAACAGTGAAAGACCTGATTGGCTTTGGGCTGCAAGTTGCCAAAGGGATGGAGTACCTGGCCCAGAAGAAGTTTGTACACAGAGACCTGGCAGCTAGGAATTGCATGCTTGATGAAACGTTCACGGTGAAGGTGGCAGACTTCGGCATGGCCAGAGATGTGTTTGACAAGGAGTACTACAGCATCCAGAACCACAAGAAGGCCAAGCTGCCAGTCAAGTGGATGGCCATAGAGAGCCTGCAGACACAGAAGTTCACCACTAAGTCAGATGTGTGGTCATTTGGGGTCCTGATGTGGGAGCTGTTGACCAGAGGAGCTAGCCCCTATCCTGAAGTGGACCCCTATGACATCACTGAATTCCTGTTGAAGGGGCGCAGGCTTCCCCAGCCACAGTTCTGCCCTGATGCCCTGTACTCAATCATGCTGGAGTGCTGGAACCCGGAGCCGGAGCTCAGGCCTGATTTCCACACGCTGGACCAGGAGGTGCTGGAGATCTGGTCCTGCCTGGAGGGAGAGCACTACATCAGCCTTAAGGTAACCTACGTCAACCTGGACCAGCCACGGCCCTACCCCGCCCTGACCGCCTCCGCTGACAAGGCTGAAGCCTCTTCTGGATCAGAGTCAGACAGCGTTATGTCCAACTGACTGGACCACACCAGAACTGACTGGACCACACCAGAACTGACCAGACCAGGACAGGGACagtagagagaggtcagagggcaCGGATGAAAGGCTTCTTCTTTTCCTATCCACGCAGTATGCAGAAAGAATCTTGCAGTTCTGTTACTTGAGACTGGATTGGGAAGGAATAAAACATTGACTATTGACTAAATTTGTCCAATTGTGTGAGTTTCCCCCACCGTGTGTACACAAATTATGTCTATATCATATTTTTGTGTACTTTTAATGTTTTCTTAAAGGTAGGTTTTCAGTTGGAGAAATTGCATTTATGGGACACCAAGTGAACCCTCTCCATGTCTGAAGCACAGCTGTAAATATGAACAAATGAATGTAAATGTCTGAAATGTGGATATGTTATGCTAATTAATTACTATGATTTAAGCTTGACATTAATATGTTTAATAGGATGGATATAGTATGTCAGATTTTGCTAACTTTTTTgctatggctgtgtttacacactgATATTTTTGTCACTATTGGTCTTTTGACCGATCAGAATTGTGCTACATGTGTAAACACAGTTTTCGAGATGGTCAATTGTGTTGATCATTTGATTTATGGTATGAAATATGTCCACTGACCAAACTGGTCAAGTTttctgcatttacacaggcaccccaattctaatatttttttcactaactaattggtcttttggccAAACAgatctgaaaaagatctgatgtgaaaagatctgatgtgattggcaAAAAAACGAATTAGCGGCGGGAaaaatctgaattgggctgcctgtcaaCTGGGCTGCCTGTCAACTGGGCTGCCTGTCAACTCAGCCCTTGAGATTCACAAGGACACACTTCTGAGAGGATAGTTCAGTTAGCCATCCTTGTGAATGGGTAAGCTTTAAATTGCCCTTCCTCTTCAGAGAAAATCATAATAGGAATACTAATTGATACTCAGGGAGTCAACATATACATTTGTCTGGTTTGAGAAATAAACCTGTCTTTTATTAAAGGGAAA

Function

GO: NA

KEGG:

id description
K05100 MST1R, RON, CD136; macrophage-stimulating 1 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1708506 lncRNA downstream 51898 80501539 ~ 80502119 (-) True G1494499
TU1708494 lncRNA downstream 64724 80484931 ~ 80489293 (-) True G1494487
TU1708480 lncRNA downstream 73606 80424352 ~ 80480411 (-) True G1494473
TU1708474 lncRNA downstream 123919 80423310 ~ 80430098 (-) False G1494473
TU1708390 lncRNA downstream 200787 80352982 ~ 80353230 (-) True G1494394
TU1708921 lncRNA upstream 34569 80616406 ~ 80616897 (-) True G1494877
TU1708985 lncRNA upstream 126243 80708080 ~ 80708400 (-) True G1494932
TU1709045 lncRNA upstream 271709 80853546 ~ 80853878 (-) True G1494987
TU1709046 lncRNA upstream 272277 80854114 ~ 80854334 (-) True G1494988
TU1709053 lncRNA upstream 300616 80882453 ~ 80884785 (-) True LOC110494680
trnai-uau-36 mRNA downstream 61201 80492723 ~ 80492816 (-) True trnai-uau-36
trnai-uau-35 mRNA downstream 63666 80490258 ~ 80490351 (-) True trnai-uau-35
trnai-uau-34 mRNA downstream 69537 80484387 ~ 80484480 (-) True trnai-uau-34
trnai-uau-33 mRNA downstream 71033 80482891 ~ 80482984 (-) True trnai-uau-33
trnai-uau-32 mRNA downstream 73497 80480427 ~ 80480520 (-) True trnai-uau-32
XM_021569963.2 mRNA upstream 94515 80676352 ~ 80680210 (-) True LOC110494678
XM_036950744.1 mRNA upstream 101346 80683183 ~ 80781256 (-) True gnai2b
XM_021569950.2 mRNA upstream 201898 80783735 ~ 80842200 (-) False LOC110494674
XM_021569954.2 mRNA upstream 201898 80783735 ~ 80842201 (-) False LOC110494674
XM_036950745.1 mRNA upstream 201898 80783735 ~ 80842201 (-) True LOC110494674
TU1708035 other downstream 466380 80071639 ~ 80087637 (-) True G1494054
TU1707296 other downstream 1204628 79348231 ~ 79349389 (-) True G1493395
TU1706748 other downstream 1738588 78807139 ~ 78815429 (-) True G1492898
TU1706752 other downstream 1740062 78803860 ~ 78813955 (-) True G1492901
TU1706762 other downstream 1772622 78778352 ~ 78781395 (-) True G1492910
TU1708910 other upstream 16157 80597994 ~ 80598532 (-) True G1494870
TU1708974 other upstream 110585 80692422 ~ 80694102 (-) False G1494924
TU1708975 other upstream 110585 80692422 ~ 80694102 (-) False G1494924
TU1708977 other upstream 110585 80692422 ~ 80694102 (-) True G1494924
TU1709066 other upstream 313251 80895088 ~ 80895437 (-) True G1495003

Expression Profile