RNA id: XM_021569963.2


Basic Information

Item Value
RNA id XM_021569963.2
length 1231
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC110494678
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80676352 ~ 80680210 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGCTCACAAAATAAACTGCCAGCCACATCACATGCACTCTTCTGTCTGAGGTGCGTTGAGTGGACATCGGACCTACTGAGGAAGTTGTGAACCGTTTTGGATTAATTGTTCTATTAGAGGAGTCAATTATTGACCAATGATAAAGTAATCAATTTGGAATTCAGACAGACACGATAAGAGCAATGGACTCTGAAGACTGTCTGGTGGACCAGATGCAGTACATGAGGTCCCTGCAGGACCTGAAGCACATGAGCCGACCGCTCAGCGATCCCTCTGGCCGGTCCTATGCCATGACCCGTGCCTGCCAGCAGAGGGCTCAGCAGCGGGAGCGCCTGTCACGCCTCCGTAGGCCCATCTCTGAGGCCAGCACTTACGACTCAGCTTGCTGCCTGGCCAGCccaatggaggaggaggagcaggaagggAAGAAGCGGCTAATGCAGGGCTCCCCCAGCAGTGACAAGAGTCTGGAGTTTGACTCAGGCTACTCTGAGGCATCCTGGCAGGACGAGGATGTGGTGCTCAGGAGGACCAGGAACGTACGCGTGTCTAACTCCGCCTGCCTCCGCACCAACCGGGGAGTGGGTCCCGCCGGCCGGATCCGGCCCAAATCCACTTCTGACGCTTGTCTGGAGCGCTGGACGTCATTTGAGGCGAGCAGCGACCCAGAAGACTGGACCACGTCACTGCTGAGCCGCAGCAGGAACAGACAGCCCCTGGTGCTGGGGGACAACAGCTTCGCTGACCTCATTAAGAACTGGATGGACCTGCCAGAGTGTCCTGAGCCAGCAGAACTCAAGCCCCATGCAGGCCGGCGCCTGGCAAAGGACCTCCTGGTCAACATGAGGAGGAAGCTGGCAGGGATGTCTAAGAGCGTGGAGATGAGGGCCAGACCAGCAGACAGCACCAGGGCCAGTAGGGCCGCGGTGGCCCCCAAACGCATGTCCTGCCCCGTGGGCTTCCAGCCACGCAAACCGTTCTTTCACCAGTCCCACACAGGCCTGCACCAACTGGGAACAGACTTCTACCAGTTCACTGCTCTCATGAAGACAGGCAGCCGACAACCTATCATATGCAATGACATCATCGGGTACGTCTGATTGGAGTGATGTCAAAACTACGGATTCTTACCACAGATTTACATAatgttatttaattttttttatatgtGCTTTATGTTGAAATAATGTTGAAATTGTTACAATAAAAATGTTTGTCTAatgaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1708921 lncRNA downstream 59455 80616406 ~ 80616897 (-) True G1494877
TU1708506 lncRNA downstream 174233 80501539 ~ 80502119 (-) True G1494499
TU1708494 lncRNA downstream 187059 80484931 ~ 80489293 (-) True G1494487
TU1708480 lncRNA downstream 195941 80424352 ~ 80480411 (-) True G1494473
TU1708474 lncRNA downstream 246254 80423310 ~ 80430098 (-) False G1494473
TU1708985 lncRNA upstream 27870 80708080 ~ 80708400 (-) True G1494932
TU1709045 lncRNA upstream 173336 80853546 ~ 80853878 (-) True G1494987
TU1709046 lncRNA upstream 173904 80854114 ~ 80854334 (-) True G1494988
TU1709053 lncRNA upstream 202243 80882453 ~ 80884785 (-) True LOC110494680
TU1709063 lncRNA upstream 212005 80892215 ~ 80892797 (-) False G1495001
XM_036950740.1 mRNA downstream 94515 80554017 ~ 80581837 (-) True LOC110494670
trnai-uau-36 mRNA downstream 183536 80492723 ~ 80492816 (-) True trnai-uau-36
trnai-uau-35 mRNA downstream 186001 80490258 ~ 80490351 (-) True trnai-uau-35
trnai-uau-34 mRNA downstream 191872 80484387 ~ 80484480 (-) True trnai-uau-34
trnai-uau-33 mRNA downstream 193368 80482891 ~ 80482984 (-) True trnai-uau-33
XM_036950744.1 mRNA upstream 2973 80683183 ~ 80781256 (-) True gnai2b
XM_021569950.2 mRNA upstream 103525 80783735 ~ 80842200 (-) False LOC110494674
XM_021569954.2 mRNA upstream 103525 80783735 ~ 80842201 (-) False LOC110494674
XM_036950745.1 mRNA upstream 103525 80783735 ~ 80842201 (-) True LOC110494674
XM_021569943.2 mRNA upstream 187919 80868129 ~ 80882244 (-) True LOC110494672
TU1708910 other downstream 77820 80597994 ~ 80598532 (-) True G1494870
TU1708035 other downstream 588715 80071639 ~ 80087637 (-) True G1494054
TU1707296 other downstream 1326963 79348231 ~ 79349389 (-) True G1493395
TU1706748 other downstream 1860923 78807139 ~ 78815429 (-) True G1492898
TU1706752 other downstream 1862397 78803860 ~ 78813955 (-) True G1492901
TU1708974 other upstream 12212 80692422 ~ 80694102 (-) False G1494924
TU1708975 other upstream 12212 80692422 ~ 80694102 (-) False G1494924
TU1708977 other upstream 12212 80692422 ~ 80694102 (-) True G1494924
TU1709066 other upstream 214878 80895088 ~ 80895437 (-) True G1495003
TU1709196 other upstream 385761 81065971 ~ 81066682 (-) True G1495113

Expression Profile