RNA id: XM_021569950.2


Basic Information

Item Value
RNA id XM_021569950.2
length 5033
RNA type mRNA
GC content 0.43
exon number 17
gene id LOC110494674
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80783735 ~ 80842201 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTACCCACCGAAATCGCTACGGTACATTACAGGCAGTAAAAACTAAGGACATGAAAGTAACCCACCGTGCGTTTCCGATTATTTCCTCACCACGCGCACAGTGAGTGGGAACCTTGAACGAATAGAATAGATAGCAGACACCGACAGGGGAGGCGGAActtaaaacaagccatacagcTCAGCTATAGTCCATTTACAAATGCGGTTCATCTCTCaatgaacatttttattttactacaAACTACATGAGATAATTGAGTGCGCGTTATTATCTTAGAGATAAAAACAGAAGAGACCGAGGAGTCAAGAAAAGAAGAGGACAGCGTTGAGAGTAAAGAGTTGTAAAATATATAATTAACCGCGGAATTAATTCACAGCGTGGCACTCGACTCATCTGaCACCTGagggagcagactgagaggaccACACACAGTGTATCATAACTGCTGCTTAAAGCATGGAGCCAGACCAATCAGAGATGAGCATCTTGGGACAATCGCCCAATGGGAAAGGTCACGACCTAGAAGATGACGCGTATGTGTCCATGAAGACCATGGCAGAGGAATTAGACACAAATGGTACTCAAAACGTCAGGTTTGATGATCCTGATGCCATCCTGGAGAATGAGGAGTTTCTGCCCAACGGAGATGGGAGGAAGCCCATGCGCTTCACAGATTTTGAGGGAAAGACGTCTTTCGGCATGTCTGTGTTCAACCTGGGGAATGCTATCATGGGCAGTGGAATTCTGGGACTGGCTTATGCCATGGCCAACACTGGCATCCTGCTCTTCCTgttTCTTCTGACTGCTGTGGCGGCTTTGTCCTCCTACTCCATTCACCTGCTGCTCAAATCCTCTGGCATTGTGGGAATCCGAGCTTATGAACAACTAGGCTATAGAGCCTTTGGCACCACAGGCAAGATGGCCGCCGGTATCGCCATCACACTACAGAACATCGGAGCCATGTCCAGCTACCTGTACATCGTCAAGTCTGAGTTCCCATTGGTCATCCAGGCCTTCAGTAGGGCAGACCCCATGGCTGATTTGTGGTACCTGAATGGGAACTACCTGGTGATCATGGTCTCCATTAGCGTGATCCTTCCTTTGGCCCTGATGAAGCAGCTGGGCTACCTGGGCTATACCAGTGGTTTCTCCCTTAGCTGCATGGTCTTCTTCCTCAGTGCGGTGATCTATAAGAAGTTCCAGATCCCCTGTCCGTTTGAGGAGTTCTCTGCAGCCAATCACACGGTCTCTCACCTGGACATCCACCTGAACGTCACTGATAACCATGCTCTCCATGATAATGGTCTGTTGCACGAGGTGGATGACTCCCACTGTGGTGCAAAAATGTTCACCATGAACTCTCAGACAGCATACACCATCCCCATCCTGGCCTTTGCCTTTGTGTGCCATCCTGAGGTTCTGCCTATCTACACTGAGCTCCGCAACCCTTCTCAGAGGAGGATGCAGCATGTCTCCAACCTCTCCATCCTGGTGATGTACACCATGTACTTCCTGGCTGCTCTCTTCGGCTACCTGACCTTTTACGGTAAGACTGAGACAGAGCTGCTACACACATACAGCAGAATCGACCCTTATGACACGCTCATCCTGTGCGTGCGATTGGCTGTCCTCACCGCTGTCACACTGACTGTCCCCATCGTGCTCTTCCCAGTACGCAGGGCCTTGAACCAGATGTTTTTCTCCAGTAAATCATTTAACTGGCTTCGTCATGTGGCCATCGCCATCACCCTGCTCTCCTTAATCAACGTTCTGGTCATCTTTGCCCCCAACATCCTGGGAATCTTCGGCATCATCGGTGCCACATCTGCCCCCTGTCTCATCTTTATCTTCCCTGCCGTCTTCTACATCCGCATTGTGCCTAAGGAGCAGGAACCCATGTTTTCCACCCCCAAGATACTGGCTGCCTGTTTCGCTGGTCTGGGCGTCGCCTTCATGACCATGAGTTTGAGCTTCATCATCATCGATTGGACAACAGGGAGCAGCAACTCTGGCGGTGGTCACTAGAGGCCGCCCTCTGCTCTTCACATGCCGGGGTCATCTGGGGGTTGGCAGAGACTTTAAGGGGATGCCTAGGTGTGTGTTTAGAACTGTTTTCATGTAATTGATGCCCTATCCCCTCCGTGGTAGAGCAAAGGTCAAAGGCTTCAGTGAGGTtgggggtagggagggggagacataATCAACCCGCTGGGAAAAACCATGCTGAACATTTCAGTCCTCTTGAGACTAAAGACTCGGACAAAACAGTCTGTACTATTATAAAGCAGTAGAGAACTTATTTGAACAAAAGGTTTCATAATCACTGTATGTAGGCCATCACAGAGGAGTACTTTTACATGAATCATCAGGACTAAACGGTCTTTTTTTAAATCatgctgattattattatttatcagTGGGATAGTGCATCCAAGTCAATGGAAAATCCAGAAGAAAGAAACTCATGCTGGTTCcccctccttcactccctccctccttccctccatccttctctttcCATCCACCTGTTTCTTTCTCCCTGACCACTGTATTCATGTGAACTGCAGCTAcatgtactgtagtactgtacataTGTAGATATGGTGGAATCTATATGTAAAGAAGGCAAAGGAAGCACATTACTACATGATAGGGAAGTGACTCTACATTATGTGTCATATGGTATTTTTGTACTATAGAAGAAATGGTTACATCTATAGGTTAGGTGAGTGCTGTAAAACATACAGTCTGTGGTTCTCTTGGTATTCCCGTCAATCACTTTCTGCCATCAGCACGTACTTTAACCATCACAGTTTACCACACTTTTCCAAATATTCTATTTGTGCGGGCATACACAGATAAAGTATATTTTCACATGTTTTCTACCAGGAGTGCCATTAGCCTGTGTTGTTTTATCTGCCAAAGCTAAGGGTGCATGTGGTTGTTGGGCTTAGTTCAAGAATATGTCCCATGATGCATTATGTTATTGAACTCTTCCTGTGTCCCTGGTACCTACAGTACACTCAGATGATGGAAGAATGACTAAACCAACCACACAAATAGCCTATACAGTGAAATAGTCATCTCTATTTATTTTACTAGATGTATCCATGTTTTTTAATTTCACAAGGTGTGCTAATGGACTCCGAACAGAGTATTTAACTATATGATCAGGTATTTTGATAGACTATATAGATGGTATGTACAGTGTATTGTATGATATTGCATATTGGAGGGTTTAGATGACAGTTGAAAGTGTAGGAGGCGATCTTGAGGGCAATGAGCTGATTAAGAAGAAAAAGGTCAACAGCCTTTTACATTCATGTTAGTTAGATGATCAACTGACATCCTAGATACAGTATTGACAGATTTTTATGATCAATTGTGCTTTTATCAATTTAAGATGAATGACTTAAACTGACCTTTTTAACACTAATAGCACATATTCAATGAATACTTATATTTCTACAATGAATTTGTAAACCCTTGTCTAAATTCAGTACAGTTCAACTGTGCCCTttcagttacaactggggtttGGCTTACTGTTTTTGGCATGACGAAATATGGAGGAAAAGGGTTTTGGTTATGTTGTTGAGCTAGtctttattgtattttaacatcTCTTTTCTACTTGTTTTGTGATTGGTGGTTGAAGTTTTAGTGGAGGAAGCAAGAGTGTCACCTGTCTGGTGATTGGCTGATTTATTAATTGATTAATTTAACACACTAAATGAACTACTGTGATATTCCAGGCATAGTATGCTGATATCAGGACTCTATTTCCAAAACGTGTGGCTATATGGCTGTATCTCCTAATGTATCTGGTTTTTAAACGTAAGGTCTTGGGATCAAGTACAGTTTTTAAAGCGTTGACGAGGAAGTGAACTGAGATTGTTAGATTTGAATGTGATTCAAAAGCCCCTTCTTTAGGCTTCTCAATTTCATAACGCAGCATTTGATAAATGATTTTCACACTGTGACATCTGTTCTCTCAAAAAACTGGGATAGCATTGTAATAACTTTGTAATAACATTGATAATTGTTGAAAAAACCCATCATATAACTTATTGAATCCTGTTATAGCTGAAAGAGTTTAATTGACATAACCTGTGAAAAATAATTCAACCAATGTAAAGGTTAGACTCACATAGTGGTGTTTTCTAATCTCAAACGTATAATTTGCCAAGTACTACATATGTAAGACAATTGCTATGTTATATTTCATTATTCTCATACACTGCTTCTGATGTTGCTTTGTCTTTGTGCACAATAATTGATATTCATTTTTGAATCAAGAGAATATTGTTGAGCGGTCTTTCTTTTACTCAACGGCTAAAAGGTTAATGCATGGATCTGCCTCAAACCCATATTTCTCCTGGTCTTGCTGAGGCAGTGGTTGTGGTATAAAGGAGGCAACACCTTGCCATAGATCAAGAACAGGCAACTCAACAGTGTCTGCTGGTTGTCTCTGCTCCCCGGTACTTCATTGATCCATAACGGTCATTGGGTTCTCAGGTCTCTTATCAGTCGCTGAGTTGAATGAATAATACAACAATAACCAGTGGACACTACGGTCCAGCCCGTCCCTGCCATAGACTATGGTATATTACCTTAATCCTTAGGCCTCTTCTGTCTGGGAATGtggctacagtatacagtatctaGCTACTACCAACTGTTTCTCTCTGAGAGCCCGTGCGCTTCTACTTTAGAGATTTGCTATCACTGTTAGAACGTCTGGGGCAACATTTTCaacattttctctttctcttgtacCCAACCCAAACTATGCAAGCCAGTTAACATGTTGTTATAGCTCTTGTTTTAACTTTGCAATTTATTTCTGAGGAAATGACAGCACTATGCGTGAATAACAAGTTATGTATGAACTTTGGGCTTATAAGGTGGCTTATATAAATAATGTATATAAATGTAAACCCTTTATATTTGTGATGCATATCTAGCTTTTATAGTGTAAATAGAAGGGACAGTTTCAGTCTgacaataaaacaaatgtaaaagtTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1708985 lncRNA downstream 75335 80708080 ~ 80708400 (-) True G1494932
TU1708921 lncRNA downstream 166838 80616406 ~ 80616897 (-) True G1494877
TU1708506 lncRNA downstream 281616 80501539 ~ 80502119 (-) True G1494499
TU1708494 lncRNA downstream 294442 80484931 ~ 80489293 (-) True G1494487
TU1708480 lncRNA downstream 303324 80424352 ~ 80480411 (-) True G1494473
TU1709045 lncRNA upstream 11346 80853546 ~ 80853878 (-) True G1494987
TU1709046 lncRNA upstream 11914 80854114 ~ 80854334 (-) True G1494988
TU1709053 lncRNA upstream 40253 80882453 ~ 80884785 (-) True LOC110494680
TU1709063 lncRNA upstream 50015 80892215 ~ 80892797 (-) False G1495001
TU1709064 lncRNA upstream 50055 80892255 ~ 80893023 (-) False G1495001
XM_036950744.1 mRNA downstream 2479 80683183 ~ 80781256 (-) True gnai2b
XM_021569963.2 mRNA downstream 103525 80676352 ~ 80680210 (-) True LOC110494678
XM_036950740.1 mRNA downstream 201898 80554017 ~ 80581837 (-) True LOC110494670
trnai-uau-36 mRNA downstream 290919 80492723 ~ 80492816 (-) True trnai-uau-36
trnai-uau-35 mRNA downstream 293384 80490258 ~ 80490351 (-) True trnai-uau-35
XM_021569943.2 mRNA upstream 25929 80868129 ~ 80882244 (-) True LOC110494672
XM_021569965.2 mRNA upstream 40253 80882453 ~ 80884866 (-) False LOC110494680
XM_021569971.2 mRNA upstream 45257 80887457 ~ 80888831 (-) True LOC100135925
XM_036950747.1 mRNA upstream 248297 81090497 ~ 81095596 (-) False LOC110494689
XM_021569980.2 mRNA upstream 248297 81090497 ~ 81103942 (-) False LOC110494689
TU1708974 other downstream 89633 80692422 ~ 80694102 (-) False G1494924
TU1708975 other downstream 89633 80692422 ~ 80694102 (-) False G1494924
TU1708977 other downstream 89633 80692422 ~ 80694102 (-) True G1494924
TU1708910 other downstream 185203 80597994 ~ 80598532 (-) True G1494870
TU1708035 other downstream 696098 80071639 ~ 80087637 (-) True G1494054
TU1709066 other upstream 52888 80895088 ~ 80895437 (-) True G1495003
TU1709196 other upstream 223771 81065971 ~ 81066682 (-) True G1495113
TU1709210 other upstream 251319 81093519 ~ 81103914 (-) True LOC110494689
TU1709315 other upstream 268245 81110445 ~ 81115238 (-) True G1495222
TU1709656 other upstream 469547 81311747 ~ 81314315 (-) True G1495538

Expression Profile