RNA id: XM_021569965.2


Basic Information

Item Value
RNA id XM_021569965.2
length 1566
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC110494680
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80882453 ~ 80884866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGGTATGGACGTCCCAAGTATCCCGGATAGCTCTTACCATGCGATCAACCCACCCAACCCCCCTTGATGACAGCATTTGGCGCACCCTACCAGACGGCGGAAGTATTGAGTTTAGCAAACTCGTAAAGATGTCTATCCAGGATGACCCAGTTCAAAGAGAAATCCATCAGGATTGGGCAAATCGCGAGTATATAGAAGTGATCACGAGTAGCATCAAGAAGATTGCCGATTTCCTAAATTCATTTGATATGTCCTGTCGGTCCCGGTTAGCCACTCTTAATGAGAAGCTAACTGCCTTGGAGCGGAGGATTGAATACATTGAAGCAAGGGTTACTAAAGGTGAAACCCTGACCTAGACCTCCAGATGACTGCTGAAACACCATGAATACACCACTTTTCCTAATTTTCTGTTAATTATTTTATACGTACTTACTGTATAGTTTACATTTGGCTTTGCCTAAACATCAGACTTTCCCATGGTTACTCCATGGATATCCGTCTGAAAGAAGTCGCTGTTAAAAAGACGCAATAGTCTCTACAAAGCAGAATGTTTACTAAAATGATATTTACACTTACTCTACCAGTTGTACATGCTGTTGGTCCTTTTGGCAATAGGTGGAGATAGGGTATCCACAGGAAAGTGTTGTTTACCTGACTTTTTGTGGCACCAGTAGGTTCTGTCGCTTGTATTTTCAATCTATCGATGCATTGCACGTGATTCACAATATGTAGACAATAGCCGAATATAGTCGACCGAAGAACATTTCCTCGCAATCAGCAGGAAGTGTTTGCTGTTAAGTTAGGCTCAGCCATATTGTGTAAGTGTTTGTCAAGTGCAAATTACATccgtattgaaaataaaatacaaacgATATACAGACTAGCGTACTGAAGGTCGGGTTGATAACACTTACCTGTGGATATTTTGTATCAGATTACCTCTGACATAGGGACAAAATTGGCAGGCAACAGGTAAAGTAAGCTGAAATGAAGTTTGTTCAACATTCTGACTTGTAATGGGACTGTTTGGGAATGCTGAGCCTACATATTAGTGACAAGTGTGTAAGTATTTCACTCACTGATTCTACGAAGAGGCTACATTTGGCTCAATTTGTTTTGGACCTTTTTTGTTTGATCCTGAACATATACCTGACTATTTTGTGTGTTAACAGTTTTAAACTCCATACTAAATTCATGAGAAggctatttcatccatttttatgGTTCAAACAGTGTATTATGTGCACTCAATCGTAGAGTGGAGAAGGACAAGCTTATCACTCAAGAAATCACTGTACAACTGCATTCTTGCTTTGTTTATCTTGCCAAGTGAATGTCTAAGCATACATCCACCTGTGTTTGAAACATTTGAACAGTTGATTTACCTGCTGTGAATCATGAATGACAAAATCAAAATGAGAGGCTTATGTCCCCAAGTGCCAAGTTGACACTGTTgctgtttgtgtgtatttattaATCTTCTATTACTATCTCATGGTCATGTTTGTACAGTACATAGTGACAATTGTTTTATggcaaaaaaataaagaaactaaCATTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1709046 lncRNA downstream 28119 80854114 ~ 80854334 (-) True G1494988
TU1709045 lncRNA downstream 28575 80853546 ~ 80853878 (-) True G1494987
TU1708985 lncRNA downstream 174053 80708080 ~ 80708400 (-) True G1494932
TU1708921 lncRNA downstream 265556 80616406 ~ 80616897 (-) True G1494877
TU1708506 lncRNA downstream 380334 80501539 ~ 80502119 (-) True G1494499
TU1709063 lncRNA upstream 7349 80892215 ~ 80892797 (-) False G1495001
TU1709064 lncRNA upstream 7389 80892255 ~ 80893023 (-) False G1495001
TU1709062 lncRNA upstream 7550 80892416 ~ 80892797 (-) True G1495001
TU1709069 lncRNA upstream 12248 80897114 ~ 80897341 (-) True G1495006
TU1709071 lncRNA upstream 15051 80899917 ~ 80900164 (-) True G1495008
XM_021569943.2 mRNA downstream 209 80868129 ~ 80882244 (-) True LOC110494672
XM_021569954.2 mRNA downstream 40252 80783735 ~ 80842201 (-) False LOC110494674
XM_036950745.1 mRNA downstream 40252 80783735 ~ 80842201 (-) True LOC110494674
XM_021569950.2 mRNA downstream 40253 80783735 ~ 80842200 (-) False LOC110494674
XM_036950744.1 mRNA downstream 101197 80683183 ~ 80781256 (-) True gnai2b
XM_021569971.2 mRNA upstream 2591 80887457 ~ 80888831 (-) True LOC100135925
XM_036950747.1 mRNA upstream 205631 81090497 ~ 81095596 (-) False LOC110494689
XM_021569980.2 mRNA upstream 205631 81090497 ~ 81103942 (-) False LOC110494689
XM_021569981.2 mRNA upstream 205631 81090497 ~ 81103942 (-) False LOC110494689
XM_021569982.2 mRNA upstream 231593 81116459 ~ 81238629 (-) False LOC110494690
TU1708974 other downstream 188351 80692422 ~ 80694102 (-) False G1494924
TU1708975 other downstream 188351 80692422 ~ 80694102 (-) False G1494924
TU1708977 other downstream 188351 80692422 ~ 80694102 (-) True G1494924
TU1708910 other downstream 283921 80597994 ~ 80598532 (-) True G1494870
TU1708035 other downstream 794816 80071639 ~ 80087637 (-) True G1494054
TU1709066 other upstream 10222 80895088 ~ 80895437 (-) True G1495003
TU1709196 other upstream 181105 81065971 ~ 81066682 (-) True G1495113
TU1709210 other upstream 208653 81093519 ~ 81103914 (-) True LOC110494689
TU1709315 other upstream 225579 81110445 ~ 81115238 (-) True G1495222
TU1709656 other upstream 426881 81311747 ~ 81314315 (-) True G1495538

Expression Profile