RNA id: TCONS_00047203


Basic Information

Item Value
RNA id TCONS_00047203
length 1029
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_023487
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 25750636 ~ 25754146 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAATCTGAACCGTTGGGCTTACACGTTTTGAAATTAGGTTAACCGGAAAGCTATCTGGAGATGGTGTTTTGAGGTGTTCATGCAAATTACATTGACATTCGATACTGATAAAGTTTCTGCGCACATAAGCCAACGCAGATCTACAGTAGGCCACAAGTTCAGCAGACTCGGAGTATAGACTAACATACTTTAAGGAACTACGACAACAAAATGAGGGCTCAGTATTGTTCTGAAGTCCGCTGACGCTGAACTGCGCAGTATTTTCTGTATGTACAGCATCACCTATGGGGTTTGGAAATGTGTGTTAGGGAATGACTGAAACTCTCCTCGCTCTAATGGACCGGCACAACAGCCACGGCTGCAGAATTGCTGACAGTCACCGCAAatttcttcctcctcctctgctTCTAATTAAATACACTGTCCTGTGCAGCAGCCCAGGCACACCGGCCAGCCTCAAACCTGCCATTTTTCACTCTTCATTCTGTACTGACACGCATGTGATGTGGTCTGAAATGCAGAACAGAGAAGAGAGAGGAGGGAGACATACAGTAGATGCACTCGCTGAGAGAAACACGTGTCTTTATGCTTCTCCACACATGCGTGTTTAATGTTTTGCCCTACATACAAGCTCCTGCACGTTCAAACTCATTTAGCGTTTGCACACTTTACAGTATATGGACAGTAAGTAATATCCAGAGACATATCAGTTTTGATGAAGGATTTGTGCACTTGGTTGTCCACTCTGTACTTCTAAAATAAGACTAATGCATACTCCCCTTACTACCCTGGTGGTAACCATAGTTTCTCCCAAAATATCAAGGCTGGTTAGTATGGTCCAGTGAGCTCCTGCTGTTGTATGTTGTAACTACAGCATCTGGTGGCAAATATCTTTTTTTCACTGACAGGGTTTAAAAATAGTTGTAGGTCTATATTCATATGCATATTGTTGTTCGTATTCTTAGAAAAATCttagacatgtttacatatttatgtgtgtgtttatactgaaaactgtaaaatgttag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046461 lncRNA downstream 338549 25408604 ~ 25412087 (-) False XLOC_023483
TCONS_00047202 lncRNA downstream 503014 25245199 ~ 25247622 (-) False XLOC_023480
TCONS_00046453 lncRNA downstream 505998 25240243 ~ 25244638 (-) True XLOC_023479
TCONS_00047201 lncRNA downstream 724537 25008317 ~ 25026099 (-) False XLOC_023476
TCONS_00046443 lncRNA downstream 724537 25023425 ~ 25026099 (-) True XLOC_023476
TCONS_00047204 lncRNA upstream 277102 26031248 ~ 26032271 (-) True XLOC_023490
TCONS_00046867 lncRNA upstream 478554 26232700 ~ 26236578 (-) False XLOC_023491
TCONS_00046866 lncRNA upstream 478554 26232700 ~ 26236578 (-) True XLOC_023491
TCONS_00047205 lncRNA upstream 600550 26354696 ~ 26368841 (-) False XLOC_023496
TCONS_00047206 lncRNA upstream 600550 26354696 ~ 26368871 (-) False XLOC_023496
TCONS_00046468 mRNA downstream 59616 25683071 ~ 25691020 (-) True XLOC_023486
TCONS_00046467 mRNA downstream 77194 25513040 ~ 25673442 (-) True XLOC_023485
TCONS_00046466 mRNA downstream 77231 25513037 ~ 25673405 (-) False XLOC_023485
TCONS_00046465 mRNA downstream 77231 25513037 ~ 25673405 (-) False XLOC_023485
TCONS_00046464 mRNA downstream 175669 25485264 ~ 25574967 (-) False XLOC_023485
TCONS_00046469 mRNA upstream 6840 25760986 ~ 25787501 (-) False XLOC_023488
TCONS_00046470 mRNA upstream 11034 25765180 ~ 25788841 (-) True XLOC_023488
TCONS_00046471 mRNA upstream 251483 26005629 ~ 26025582 (-) True XLOC_023489
TCONS_00046472 mRNA upstream 523244 26277390 ~ 26282672 (-) False XLOC_023492
TCONS_00046473 mRNA upstream 525357 26279503 ~ 26283359 (-) True XLOC_023492
TCONS_00046441 other downstream 726613 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046414 other downstream 1587526 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other downstream 1603761 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046409 other downstream 1632241 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046400 other downstream 1773351 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046479 other upstream 605093 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046480 other upstream 607600 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046487 other upstream 721036 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 754742 26508888 ~ 26534654 (-) False XLOC_023502
TCONS_00046542 other upstream 3273282 29027428 ~ 29028548 (-) False XLOC_023535