RNA id: XM_021569984.2


Basic Information

Item Value
RNA id XM_021569984.2
length 3331
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC110494690
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81115867 ~ 81238629 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGTGTTGTTGACACATCCGGTGGAGTGGACTGATTTAGCACCGTAAAATTGTGTGAGAGACGAGCCTATGCGCACgatagagtaagagagagagagagagagagagattacggAGTCTGACTCATGTCCATCACCCACTTTTCTAGTCATCATCACAGTCATGAGGTAGGTGTGAATATCATCCTGGAGGCTGCGAAATGAATCTGTGCTGTCTGTCCAAACCGCAGGTGCATCAATATGCAGGTGTGGTTTAAAGAACAGACTTTAATGTTTTAGTGAATTTCATTAACACGTTTACGGTCGTTCAACGCATCGATATCCCCATCTCGTGTTCCTCTATGCTTGTTTCGCTCATTCGCACAGGGGTCCTTTGTCAATGAGTCTTTCAATTTCTGTAGCTTTTCCCCAGAGGAGTTATTTTGCTGGAGGATCGCGCATTGAAATTGTTTGGATCTTTCCTTGTTTGGAGATGACAGGTCATTTTAAGGCAAGCGGGAAACCAGAGTGAGTTGCCATGGCGGCAGGAGTGGCTGCATGGCTTCCCTTCGCCCGGGCAGCAGCTATTGGCTGGATGCCTGTGGCCAACTGCCCCATGCCTATCGCTCCTAGAGACCACACAAAGAGACATGATGAGCTGATCATCCTGAATGTGAGTGGACGTCGCTTCCAGACCTGGAGGACCACACTGGACCGCTACCCAGACACCCTGCTGGGAAGCTCAGAGAAACAGTTTTTTTACGATGAGGAGACCAAAGAGTATTTTTTCGACCGGGACCCAGACTCCTTCCGTAGCATTCTCAACTTCTATCGGACGGGAAAGTTGCACTATCCACGCTATGAGTGCATCTCGGCCTACGACGAAGAGCTAACCTTCTTCGGCATCATCCCAGAGATCATTGGTGACTGCTGCTATGAAGAGTACAAGGATCGGAAGCGGGAGAATGCTGAACGTCTCCAGGACGACCAGGATGACAACAAGGACTGCAAGCTGCCCAACATGACATATAGAGAGACCATGTGGAGAGCCTTTGAGAACCCTCACACCTCCACCATGGCCCTGGTGTTCTACTACGTCACCGGCTTCTTCATCGCCATCTCAGTCCTCACCAATGTGATAGAGACGGTTCCGTGCGGTGCCACGCCTTCCCAGAAGGACATGCCATGTGGCGAGCGCTACACCGTAGCCTTCTTCTGCATGGACACGGCCTGCGTCCTCATCTTCACCATAGAGTACCTCATGAGACTGTTTGCCGCGCCCAGCCGTTACCAATTCATGCGCAGTGTGATGAGCATCATCGACGTGGTGGCCATCTTTCCCTACTACATTGGCCTGGTGATGACAGACAACGAGGATGTGAGCGGAGCCTTCGTCACGCTCCGTGTGTTCCGTGTGTTCCGCATCTTCAAGTTCTCCCGCCACTCGCAGGGCCTCAGGATCCTGGGGTACACGCTGAAGAGCTGCGCCTCGGAGCTgggcttcctcctcttctccctcactaTGGCCATCATCATCTTCGCCACCGTCATGTTTTACGCAGAGAAAGGGTCGTCGTCGACCAAGTTCACCAGCATCCCAGCCTCCTTCTGGTACACCATTGTCACAATGACCACGTTGGGttacGGGGACATGGTGCCCAAGACGATCGCAGGGAAGATCTTTGGTTCTATCTGTTCTCTGAGCGGGGTGCTGGTAATCGCCCTGCCCGTTCCCGTCATCGTGTCCAACTTTAGCCGCATCTATCACCAGAACCAGAGAGCTGACAAACGGCGTGCTCAGAAAGTACAGAAAGCCAGACTGGCCAGGATAAGAATAGCCCAGGCGGGCAGCTCCTGCACGGGATTCCTTCAGAGCAAACGCAACGACCTCCTCAACGACCTGCTGGAGCTCACGGGCTCAGACGATGAGGAACTGCTGCTCAGCAAGAGCATGTCATTATTAGAGAGTCAACACCACCATCTATTGCACTGTCTGGAGAAGACCACTGCCCATGAGTTTATGGATGAGCAGCTGTATGAACAGAACTGTCTGGAGACCACGGTCCAGAGCTACACCTCCCGTAGCCCCTCCCTCTCCAGCCAGGACAGGCCCATAGGCACCTGCTGTACCCGCCGGGTGAAGAGGAGCTCCCCCCTGCCCAACTCCAGCATGCCCCTCCAGCCCAGCCATCAGCATGGGCCGCTACAGGAGCTCAGCGCCCTCCGCATCCAGTGCGGGGACAAGCTACCCCCCACCACCAGtcgctCTAGTCTCAACATGAAGACAGACGAGGTGGGTCTGTTCAACTGCAAGGGCGGTCAGATCACCACGGCGATCATCAGCATCCCCACGCCCCACTCTGCCACCCCGGACGGGGACGGTCTTCACGGACCCCCCCAGCGcagaccccctcctccccccaccgGCCCAGAGGCCGCCAGTATTAACACCACAGCCAGCTCCACTGTCTTCAAAGTGTCCgctctgtgactgtgtgactcaCCCACTcgacagactgactgagcaggaggagaggtgaagagaggctTTCACTAGAACTCTACCTTGAAGGACCCCTGTCGCCCGTTTCAGAGATAGAGAAATGGGAGAGAACTCCCCGTGTACCAAGGAGTATACAGCCTTTTAGGCAGCAAGGGGATAGGCTATACTGAGTGAAATGCTGCACGTCAGCTGATGGTAGAGTAGGCTACGATATGCCATTTTCCTAAAACGGGCCAGTATGTGTGCATTTTGGGATTATGACAGGACAAAGGAAGTCACTGTGTCTTTGTGCACTTCGCACCTACATATTATTGTTTTGATCTGCCTACAGCTAAACCCTGAATGTCTGAAAGATGAGGATGAAGACACCTATCAATGTTTTAACTTTAGGTTGTTAGGTCTTCTTTATGTTTTGTGTTGTCTTATCTATTttccgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtggtactttTATGAAATGTTCATATTTTAGTGGGTTATAACCTTACATTTCCATCTATCCACAATGTCCTTAAAATCTAAACAACATAAATGCCTACTAGTACTCTGACAAATGTTCCATCAGACACGCTACAGTACTGCTGCTTTCccaaatctgtctctctctctctcgctatctctctgtctctctctctctcccttgctctcactcgttctctctcaatttcaatttaaggggcgttattggcatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1709199 lncRNA downstream 47613 81068510 ~ 81068846 (-) True G1495114
TU1709190 lncRNA downstream 53222 81063011 ~ 81063237 (-) True G1495110
TU1709181 lncRNA downstream 65534 81050408 ~ 81050925 (-) True G1495101
TU1709179 lncRNA downstream 68073 81048166 ~ 81048386 (-) True G1495099
TU1709175 lncRNA downstream 70785 81045462 ~ 81045674 (-) True G1495095
TU1709646 lncRNA upstream 56029 81294658 ~ 81294871 (-) True G1495528
TU1709647 lncRNA upstream 56995 81295624 ~ 81295830 (-) True G1495529
TU1709651 lncRNA upstream 64774 81303403 ~ 81303845 (-) True G1495533
TU1709652 lncRNA upstream 68633 81307262 ~ 81307500 (-) True G1495534
TU1709654 lncRNA upstream 71370 81309999 ~ 81310414 (-) True G1495536
XM_021569980.2 mRNA downstream 12517 81090497 ~ 81103942 (-) False LOC110494689
XM_021569981.2 mRNA downstream 12517 81090497 ~ 81103942 (-) False LOC110494689
XM_036950747.1 mRNA downstream 20863 81090497 ~ 81095596 (-) False LOC110494689
XM_021569971.2 mRNA downstream 227628 80887457 ~ 80888831 (-) True LOC100135925
XM_021569965.2 mRNA downstream 231593 80882453 ~ 80884866 (-) False LOC110494680
XM_036950748.1 mRNA upstream 103568 81342197 ~ 81374548 (-) True LOC110494693
XM_036950749.1 mRNA upstream 157441 81396070 ~ 81420329 (-) False LOC110494695
XM_036950750.1 mRNA upstream 157441 81396070 ~ 81420330 (-) False LOC110494695
XM_036950751.1 mRNA upstream 157441 81396070 ~ 81420330 (-) True LOC110494695
XM_036948436.1 mRNA upstream 242653 81481282 ~ 81488954 (-) True LOC118940159
TU1709315 other downstream 1221 81110445 ~ 81115238 (-) True G1495222
TU1709210 other downstream 12545 81093519 ~ 81103914 (-) True LOC110494689
TU1709196 other downstream 49777 81065971 ~ 81066682 (-) True G1495113
TU1709066 other downstream 221022 80895088 ~ 80895437 (-) True G1495003
TU1708977 other downstream 422357 80692422 ~ 80694102 (-) True G1494924
TU1709656 other upstream 73118 81311747 ~ 81314315 (-) True G1495538
TU1709673 other upstream 88056 81326685 ~ 81327113 (-) True G1495552
TU1710622 other upstream 933840 82172469 ~ 82174852 (-) False G1496390
TU1710627 other upstream 933840 82172469 ~ 82174852 (-) True G1496390
TU1710947 other upstream 996499 82235128 ~ 82240264 (-) False G1496689

Expression Profile