RNA id: XM_036950751.1


Basic Information

Item Value
RNA id XM_036950751.1
length 3397
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110494695
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81396070 ~ 81420330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGATTTGGAGTGTGTCCCCCCACAGACAGCAGCATTCACTAAACCCCTGCCTTCTCAGGGATTCCTTGGTTATTTTATGCACTGAGTGTGTAAGGGGTAGGCTATATTTTCAGTGAGGAAAACAGTGTCTGTCAAACGTCACATGAGGCCGGAAACGATCGCTTCCTGAAATGCTGTTTATAGTCATTGGATCATTTTGTTCTTCGCTACGTTAGTATTGGGTTATTAATTAATTTCTGTGTCGGGTTAGGTTATTATTCCCACCGCAATGATAAGTAAAGTAAAAAATGCGATGTCCACGCTGGTGGGAGGAATGATACCCCACGGTCATCACCAGCACCACGGATCCGGGAACGTTCATCACCAGAACTGTCACCAGGACGGTCTGCCTCCACTGTTCCCTTACGGTCGACCCGAGTTTCTGGACCTTACATCGGAGCTTCTTCAATACTCGACAGAACATGCATCTCGACCTGTGCTGACTTTGAAGAGGGACAGCAGGCTTCCCTGGCGGACAGGATACGCAGAGACCATCAATGCTGGGAAGAGCATGCTAAATGAGGACCAAGCGTCCTGTGAGCTGCTCTACTTGAAGAAGCTGAGCGACAAAAAACAGAGCAACTCCACGCTGCTGAATGACAATGGGGATGGGACAGGAATCCCTCTGCAGTATTGGGGCATGTTTGACGGCCACGCCGGCTCAGGGTGTGCCATCATGGCGTCCAAACTCCTCCATCGCCTTATCAGAGACAGACTGGAGGACATTGCCCACCTGCTGGAGAACCCCTCTGCGGCGCTCCCTATCTGCCTGGCCAATAATGGCAGCCCCTACCAGGGGGCGGTGAAGAAGGGGGCGAATGCCACCCAGGACCCAGAGAAACCTGACGCCATCTCTGATCCCTCCATCCGCTTCCACATGGAGAAGGCTGTCAGTCTGGAGAGTCTGATCATGGGTGTCATAGAAAACGCCTTCAAACAGATGGATGAACtgatagagaaagagaagatGTCCTATACCATCTCTGGTGGTTGTTGTGCCTTGGCTGCCATTCATTTGATGGGGAAGCTCTACGTTGCCAATGCAGGAGACAGCAGAGCCATCATCATCCGTAACGGTGAGGTCATCCCCATGTCCAACGAGTTCACGCCAGAGTCTGAGAGGCAGCGCCTGCAGTATCTGGGCTTCCTGAGACCGGAGCTGCTTGGGAACGAATTCACGCCCATGGAGTTCCCTCGCAGGATCCAGTACAGGGAGCTGGGCAGGAAGATGCTCTTCAGGGACCACACAATGAACGGCTGGGCTTACAAAACCATCGTAGAAGACGACCTCAAGTTCCCACTCATATATGGAGAGGGCAAAAAGgccCGTGTCATGGCCACCATTGGGGTAACACGTGGCCTAGGGGATCATGACCTGAAGGTGTACAACTCCAACATCAAGCCCTTTCTCTCCTGCTGCCCAGAGGTGATAGTGTACGACATGTCTGAGTACGAGCACAGCCCTGACGACGTGCTGGTGATGGGTACAGATGGGCTGTGGGACGTGACCACGGACAGGGAGATACACGCTGGCTGCCCAGGACCTGTTGATGCGGTCGCGAGGGGTCCTGAAAGAGAGGGGCTGGCGGTTACCCAATGAGAGGCTGGGTTCAGGAGACGACATCACTTGTTATGTGATCCCCTTGGCGGGACCGGCGGGGCCTGCGGGACCGGAGGGgcccgagacagagacagagacatgacaGGCCCTGTCCCACCACCCCGCCAGGAGAGGACTAGTTCCCTAGGACCGACCAGTGTCACTCCGTCCCCCCTACCCTAATCTGGGGGAGGGGGAAAGAAAACACCTCTCTTGTAGGGAAGCCTCAGGTTGGAGAGCCGGCGCTAACACATGTTGACCGGCCCATTCCCCTGGCTTCTACAACAACACACTCACCCACCGGGTTCTCCTTATTGTTTATATTTGGTACTCCTGTAACCGGTGTTCAATAACATTACCCGACTGACACATGTCCATGTCTGAAACCTGCTCTTTATGATCGCTACTTAACCAGACATCTGCCCCTGTAGTTTCACATTTGAATCTCTCTAATTGAATGGCTGATCATTTCATCAGGGTTGGTTTGGCCATCATCTTATAGCAGTGCTTGGTTCGCCCTTCTGAGTAAAATCTCCTTATTAGCTTATGTGATTTATGTCATGCTAAATTGGTAAAATAATCACATTTATGGCTTGTGTAGAGCACAGTATGACAGGTGGAGGTAGATGGCCATGCATATTGTTTAACGCAGATAGCGTGACTCTGGTAGCAGTTGAGGGACTAGCCTCAAGTAGGAATGACGCCACTTCTCAGAAGGCATTGGAGCTCTGTGAGAAAATATCTATGTAAGCCCCATGTCAAAGGTCGGGAGATGCGTCTGAAACATGGATGGGGATGAGGAAGACACAGAGAATGAAGAGGGGAAAGTCTGTGACCCGTCCCGTGCCAGTGTTTCAATGTCCAATGTCAAAGCAGCAGTGAATGATTATGAAGATGTGAAACCTGAAGCACTTTAAGACAATCTGTTTGTTTAGTGGTTATGAATTCAATGGCTTTTCTTAAATGATGTATGTTTAGAGATATCTTTTTGTTTCTTATTGTTAGTGTTGTCACCAAGAAAGtagattgtatttttttgtttcagAAAGGACTAagctggaatgagatgttcgtgACATTAGTCTGTTGTAATGTAATTCTATCCAACTCAAATATCAGAGTCTTTTGGCATATAGGCGCAATGTCGTTTTGAATTTGAATGAAACAAAGCTTTCTTTCCTCTCAAAGTGATCCTATATAATGTATCGGTTTGAGTATTTTATCCCAGATTTAAAAGATCCACACTTTTATGCTCCAATTAAATCATGCAATGGATGAGAAATCTTCTATATTTTCTGGAGTGACAACTTGTAGTAGAGAACCTGTTTGTCGGTATGTGATCAATTTCACTTGACTGCCTTACTAACACTCGAGGGACATTGTGAGCCAGGGCCTGTATGTTAATATGTTAACTCATTCATATCAAATACTTTATTTCACTCATGTTAAAAGTTTAGAAGAAAAATGTATGCCCTCAAATGTCTTACTTCTCTCTGTAGCCACTAGGTACGTTATCCAGAGCTTTTGAGAACTTTGGTTAAAAACGGTATCATACATGATTGCTTTATTTATAATAAAGAGATACTTTATTCTCGATCCTTTAATACCAAAATAAGAAGTACACTATGTTCCTTACCCATTTCCCCATATCCTTTGAACATACTCCCAGTAATTGTGAACCGTATGTTGAACTAATAAGTTGGTAAATTATGGAATAATGCCTAAAGCAGTTAGATAATGTCCATTCAGTCCAGGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1709661 lncRNA downstream 15400 81378131 ~ 81380670 (-) True G1495542
TU1709677 lncRNA downstream 57601 81333479 ~ 81338469 (-) True G1495556
TU1709658 lncRNA downstream 78363 81317496 ~ 81317707 (-) True G1495540
TU1709657 lncRNA downstream 78579 81316935 ~ 81317491 (-) True G1495539
TU1709655 lncRNA downstream 79302 81315670 ~ 81316768 (-) True G1495537
TU1709714 lncRNA upstream 2920 81423250 ~ 81423498 (-) True G1495591
TU1709715 lncRNA upstream 6124 81426454 ~ 81426676 (-) True G1495592
TU1709734 lncRNA upstream 30197 81450527 ~ 81451217 (-) True G1495609
TU1709760 lncRNA upstream 73357 81493687 ~ 81494504 (-) False G1495634
TU1709764 lncRNA upstream 73357 81493687 ~ 81494504 (-) True G1495634
XM_036950748.1 mRNA downstream 21522 81342197 ~ 81374548 (-) True LOC110494693
XM_021569982.2 mRNA downstream 157441 81116459 ~ 81238629 (-) False LOC110494690
XM_021569984.2 mRNA downstream 157441 81116459 ~ 81238629 (-) False LOC110494690
XM_021569980.2 mRNA downstream 292128 81090497 ~ 81103942 (-) False LOC110494689
XM_036948436.1 mRNA upstream 60952 81481282 ~ 81488954 (-) True LOC118940159
XM_021569991.2 mRNA upstream 450744 81871074 ~ 81887569 (-) True LOC110494699
XM_021569995.2 mRNA upstream 493217 81913547 ~ 81926173 (-) True LOC110494702
XM_036950752.1 mRNA upstream 516499 81936829 ~ 81973979 (-) True LOC118940497
XM_036948437.1 mRNA upstream 566582 81986912 ~ 81988396 (-) True LOC118940160
TU1709673 other downstream 68957 81326685 ~ 81327113 (-) True G1495552
TU1709656 other downstream 81755 81311747 ~ 81314315 (-) True G1495538
TU1709315 other downstream 280832 81110445 ~ 81115238 (-) True G1495222
TU1709210 other downstream 292156 81093519 ~ 81103914 (-) True LOC110494689
TU1709196 other downstream 329388 81065971 ~ 81066682 (-) True G1495113
TU1710622 other upstream 752139 82172469 ~ 82174852 (-) False G1496390
TU1710627 other upstream 752139 82172469 ~ 82174852 (-) True G1496390
TU1710947 other upstream 814798 82235128 ~ 82240264 (-) False G1496689
TU1710950 other upstream 814798 82235128 ~ 82245987 (-) False G1496689
TU1711213 other upstream 1234142 82654472 ~ 82661638 (-) True G1496921

Expression Profile