RNA id: XM_021569989.2


Basic Information

Item Value
RNA id XM_021569989.2
length 1849
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110494696
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81432188 ~ 81602161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTGTCCTCCTCTGCCTGCCGTTGCTAACGCTCCGGAGTGGACCCCTCATCTCAAATGCGTCGTCTGGACCGTGAAGAGACATAGTCTACACACAACACATGAACGAAACAATACTGGATGAACTGCAATAAGAACAATCTGTTCTGTAGAAACAATGATTGACTATCAGTCGTTGCTTTCAAGCTCTCTTGCTTTTGCGGTTGGGAAGTTGTGAAAAAACGCTAAAGGACCAGGAACTTTAGAAGACTTCAGAGTTGCTATATATGCAGTCGACCGATTAATCCGGGAGCCCGGTCGAGTTTGAAAGTCTATGCAATAGGCTACATTTTCTTTTGACATCTTTTGACTCAGGGATTTGGCGTTTTGAAAGCTTGATGTCTACACATTTTTCCTAGGTTATGTTTTGTCGTGGTGGGCACATTCACGGGCTAAAGGAAATTGTATTTCTTTAACATTaccctgtttttgtttttgaaaATGGAGAGCAAATGAGAGGGGCATTTCCCGGGATTAATTGACAGCACAACGACAGAATGCGGGAGAGAGACCTACGGAGTGTGTGCAGAAGGGTGCTTCTGTTGGCcgtctgtctggtgtctctctgggGACAGCTGACCCTCGCTTCGTCACACAGAAGTCACATAGtgcatgtcaaagcaggGACCTGTGAAGTGACCGCCGCCCACCGCTGCTGCAACAAGAACAAGATCGAAGAGAGATCCCAGACGGTGAAATGTTCCTGCTTCCCCGGACAGGTTGCCGGGACAACAAGAGCGGCCCCATCTTGTGTGGACGCTTCCATAGTTGCCCAGAAGTGGTGGTGTCAGATGCATCCATGTATGGATGGGGAGGAGTGTAAAGTTTTGCCTGATCTGAAAGGCTGGAGCTGCAGTACGGGAAACAAAGTGAAGACGACGAAGGTCACGCGATAGTGCTGTCTGTCCTGGATCTGAAGACTTGGTGTCATCAGTCATTTCTTCCTTGACAGAAACCACTGGGTCTTCTTGGATGTGAGAACTATGTATTGAATGATTTTGGGAAGGAACCAGGGACCAGTAAGGCAACATGGAAAACTCCTGAAATTCTACTGAACGGATGCAGAGCAGAGACTTGACCTGGAAATAGCATAGAACCACCTATCCAGACAACTGGACTACTGATTACATCCAATTCCTAGCCGTTATTGTATCACCCACCAAATTCCTGTTTGTGTTTTTTCCTCCAACGGACTACTACAGTAGGAGATCCAACCTGCAAGGTATTTATTCATTAAAAAGACATACTGTGGATTACGCAAGCGAGATAACCCTTAATTCGAAACATGTGACGTGACATTTTCAAATCTTTTCCCTCTTTTAGTCACTGAGAGCTCAGTGACTCCAAAACAATGTGTCTGTGTTCGAGATGGATTTTAGATCATAAGCATTTCCATCCCTTTTTAGCTTTATGAAGCAGATGTCTCTTCTTTTTAAGGTTTTTGATTTGGACAAAAAATATGAAATGTTTTTGAGAACTTGAGACATCAAAGGAGATGGCACAGTAGAAAAACCAGTTCTAACCTCTATGTTTCAGTGTTTTGAATCAAAAGAcaccatcccactgggcacagacgtcaattcaacatctttTCCATGTCCGTTAAACGTAATTTCATTGATTGGACGTGGTAACAATGTTGATTTAACCCGTGTGTGTGACCAGTAGGATGGTTTCACCAAACCAATTAAAATGACATAAGCTGAGCTCCAACTGTTTTACTAACTGTTTTACTATCTGTTTTTAAAAGCCTGGTGACCAACATTGAGTAAAAGTGTCAGTATTATCTCAATAAACCTATTTCAAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1709519 lncRNA upstream 6859 81425045 ~ 81425329 (+) True G1495409
TU1709518 lncRNA upstream 7479 81424478 ~ 81424709 (+) True G1495408
TU1709479 lncRNA upstream 87627 81342127 ~ 81344561 (+) True G1495372
TU1709463 lncRNA upstream 95920 81335195 ~ 81336268 (+) True G1495363
TU1709459 lncRNA upstream 112097 81319813 ~ 81320091 (+) True G1495359
TU1709528 lncRNA downstream 411 81602572 ~ 81603171 (+) True G1495417
TU1709856 lncRNA downstream 2857 81605018 ~ 81605225 (+) True G1495707
TU1709857 lncRNA downstream 3155 81605316 ~ 81605536 (+) True G1495708
TU1709861 lncRNA downstream 5868 81608029 ~ 81608289 (+) True G1495712
TU1709871 lncRNA downstream 11391 81613552 ~ 81613854 (+) True G1495722
XR_005036710.1 mRNA upstream 38588 81392702 ~ 81393600 (+) True LOC118940108
XM_021569988.2 mRNA upstream 51401 81374533 ~ 81380787 (+) True LOC110494694
XM_021569986.2 mRNA upstream 97089 81323567 ~ 81335099 (+) True LOC110494692
XM_021569985.2 mRNA upstream 118928 81284086 ~ 81313260 (+) True LOC110494691
XM_021569977.2 mRNA upstream 389569 81018030 ~ 81042619 (+) True LOC110494688
XM_021569990.2 mRNA downstream 226410 81828571 ~ 81847540 (+) False LOC110494698
XR_005036711.1 mRNA downstream 259390 81861551 ~ 81862479 (+) True LOC118940109
XM_021569992.2 mRNA downstream 288396 81890557 ~ 81892633 (+) True LOC110494700
XM_021569994.2 mRNA downstream 302607 81904768 ~ 81911784 (+) True LOC110494701
XR_002469402.2 mRNA downstream 324490 81926651 ~ 81927921 (+) True LOC110495197
TU1709462 other upstream 94025 81337017 ~ 81338163 (+) True G1495362
TU1709446 other upstream 138262 81293440 ~ 81293926 (+) True G1495346
TU1707042 other upstream 2046751 79382645 ~ 79385437 (+) False tusc2
TU1710167 other downstream 226571 81828732 ~ 81833101 (+) False LOC110494698
TU1710572 other downstream 561045 82163206 ~ 82169750 (+) False G1496351
TU1712329 other downstream 2012104 83614265 ~ 83634495 (+) True G1497918
TU1712638 other downstream 2277771 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 2523676 84125837 ~ 84174177 (+) True G1498583

Expression Profile