RNA id: XM_021569990.2


Basic Information

Item Value
RNA id XM_021569990.2
length 5079
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110494698
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81828571 ~ 81847540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAGTTTCACATAGGGCCAATAGTGCAGTACATGTGAGCTGGAGACACAAGGCAAAAGGAGGTGGGGAAAACATTTTAGGGGCACGGCTCTAATCCTCAAACAGCCAATAAGAGGCAGACTGGACTGACCTCATCAGTTAGCACTCTAGTATCTTGGCCGGTCCAATTGTTTGAACTGGCCACTGAATGAACCAAACTTTGTCAACTTCTCTTCCATTTTACAGACCAGCACTTATTCAGACTACGAAGTGTTCATTTCCCCAGCACAGGGACACTACTTGTAGTAGTGGAGGTAGACTTAGACTTCTGTAGAGGTCTTTTGCTTCTTACACAGAGAAGCCCTGTTCTGAAGTGCCTCATTGAGAGGAGAGCTCCCCATCTCAGCCTGTAGAGCTCATCTGGAACTAGGAGGAGCTGCTGGCAAGGTGCCCATTGCTGTGTAGCAGCCATGCCGCCTGCCATGGGAGGACCCCAGGGGTACACCCCTCCAGaggggggctggggctgggcagtAGTGGTGGGAGCCTTCATCTCCATCGGCTTCTCCTATGCCTTTCCCAAGTCCATAACCGTCTTCTTCAAGGAGATTGAGGTCATTTTCGACTGCACCAGCAGCCAGGTGTCATGGATCTCCTCCATCATGTTGGCAGTGATGTATGCCGGAGGTCCTATCAGCAGTATCCTGGTTAATAAGTATGGGAGTCGTCCCGTCATGATGTGTGGAGGATTCCTGTCCGGCTGTGGACTGATTGCTGCCTCCTTCTGCAACTCAGTGGAAGGACTTTACTTCTGTGTGGGAGTGGTCGGAGGTTTGGGACTGGCATTCAATCTGAACCCAGCCCTTACTATGATTGGGAAGTACTTCTACCATAAGCGGCCCATCGCCAATGGAATCGCCATGGCAGGCAGCCCAGTGTTCCTATCCACCCTGGCCCCTCTCAACAGCTGGTTCTTTGACCAGTTTGGTTGGAGGGGCAGCTTCCTGATACTGGGAGGCCTGCTGTTCAACTGCTGCGTCGCTGGTTCTCTCATGAGACCCATCGGACCAAAACCACAGCCTGCAGTGAAAAGTGAAGATGCTGCCAAGGAGAGTACGACGTGCGGGCAGAAGTGTAACAGCTTTATCGACCTCTCGCTGTTCAAACACCGGGGCTTCGTGCTCTACCTCATGGGTAACGTCATCATGTTCTTTGGTCTCTTCTCCCCACTAGTTTTCCTTAGTAACTTTGCCAAGAGCAGGGACATCCCCAAAGAGAAGGCAGCCTTCCTGCTGTCTGTTCTGGCCTTTGTGGACATGGTGGCCCGGCCCTCCATGGGCATTGTGGCCAATACAAAGTGGATACGACCCAGGGTGCAGTACTTCTTTGCCTGCTCTGTGCTGTTGAACGGTGTGTGCCACGTCCTGGCGCCCATCTCCGTGGACTACACAGGCTTCGTTATCTATGCCATCTTCTTTGGCTTTGCCTTTGGCTGGCTGAGTGCAGTGCTGTTTGAGACGCTCATGGACCTGGTGGGAACGCAGCGCTTCTCCAGTGCAGTGGGACTGGTCACCATTGTGGAGTGTGGGCCTGTCTTGTTAGGTCCCCCTATGTTAGGGAAATTCAAAGACATCTACAATGACTACCAATACACCTACCAGAGCTGTGGGGTGATCCTTATCATTGCCAGTGTGTTCCTGTTCGTGGGGATGGGTACCAACTACCGGTTGTTGGACAaagagaaaaaggaggaggaaaggaaggctAAACTGGAGGGAAAAGAAGAAGAGTCCAACAAGGACAATGCTTCCAAAGAAGCCACCAATGACAGGGTGAGAGCAGTTGACGAGACAAAAACTGCAGAAGACATAATCTAACTTTCCTTGACATCAAATTCACGCATTCACATGGTACCTCAATACAGTCAATGAGATAATGTAGACCTCAAATTAATTTGGTTTAAGTCTTTGGCAGATAGCAATGTTCATGTAAACATATTTCTTCACCAGTTCCACTTCTGTCAATGAATAATGTATTATCAGCATAATATGACTGTGTCAAGATACACGTATGTATGCAACTTTTTACTGAAATGTACAACTGCCCTACCAAAAAATACTATATTTTACTGGAGTCCAAATAGTACATTTTCTGCATAAGTGTTGTGATATATTTTAGAATATTATTATATACAGGTAATTCCTATGTGTATAGTGTATTTGGAATTTCAGAAGTCCACCTCAAATAACTACAATGTACAGTATTATTCTGTGAAAGCACTAGTGCTTTTAGAAGGTTTAATGAATCACTGTAACATTTTGTTCACACTGTCATGATGATTGGTAGGTTTCTTTAATCTCCGAAAGCATTGTTACATGAATAATCAGGCATAGTTTCTTGATATTCACAGTTCTTCAATTCATCTTCAAAACAATTATATTCCCGTGTTGACTGCACAGCTAAAAGCTAGAGAGACCGATAACAACACCAACATCCAGTTTGAAGACTTGCAGAAACTGCTTCTGCAATATGATTCCCCGATCACACTTGTCACTATTTACAAAAATTGGCCATatccaggggcgcaactttggttttagaagtgggggtgGACATTACCATTGTTAGTTTTTgaatccagtcggataaacactccaaacagcctacccaaccGCTCGGAGGcttccgcatggtcctaaagcacaccgttacCTCGTTTTGTATCATATTCAAATGATAAAATTAGGGAGGGAAAAAAATGCAATTTCTAAATGtggggggggacatgtccccctcgtccccagtgaaagttgcggcCCTGGCTATATCGTTACAATTATGTAAACAAAAATGGGCTTTTTGGTATTCATTTAAGTTTAAGTtttggttaaggtttgggttaaggttaggtttataaTCAGATTAAAAAAATAGAAATTGCAGAAAAAGCCTGGGTTTAGCCATATTTATCACTATATGCCTCTGGTAACTAGTGATGACCACATTTTTAGCTAGCTAAACTCATGAATAGAAACACATCATCGGGTCTAACGGTTGTCTTGCGCCAAAATGGGAATGTGTAGGCCCTAAAATCAATGGCACTAATTCAATATAAATTtgttttttacaaaaaaatatgtacgtgtcagtttgtcactttcacgaggttggaaTATTAACTACTTTAGCcattggctcgaatctaggttgtgcctttagattttgAGAACATTTACAGAATTTTGCACTTCTATCACTGACATCTCATTCCGGGCCTGGTCTTCTTGGTCTGTTACGCAAGCATTTCCagaagtacccccccccccaataaaagTTTTCccaagttggatgaccattcaaacaaaaaaaatcccagtCTGAGCTAATTTTTTTCccatttcccagttgtcttgactgcactgaagtcggagatttccgagtttccagttgttttgaatgcagtATCTGTGACAACACCAAAGACAATACAACACTCTTGAACTATGAAGGGTGCAATTGGGGgcgttcctgcatgtgggcattTCTGCATCTGTAGGAACCACTCTTTATGTGTAAATGTGTCTTTTTTTTTGCTAGGACTCCGGTCCGCCAGGCAGGAGGCGGGGGCACTCCAGTACAGTATGTGGTAGTTATGCATGCCGAAGAGGCAGGGGGACAACGTCAACTAGTTAGCTAGTAATGTTAGACAGTGTCCTTCGCCCCAAGCCTGTTGGGCATTAGTTTCCCGCTGTTCTGTTAACAAGGTCGAGGGCAGTTGTTCGGCAGGCATTTAGGACACTGGGTAATAGCTAGCCAGTTAGTAGGCTAGGACTCCGGTACACAGTAGGTGggataggtagctagctagcacaccgGTACACAGTGTACTTTCCCCTGCCTGTCGGGCACTTTTTTCCGAAGTACTGTTAACGACAGCAAGGGCAGGTTTTCGGCAGGTGTTTAGGACACTGGGtgctaactagttagctagctaggatTCCAGCAGGTGTTCGGCAAGCCGGAGCAAAAAACACTGTgtgatagctagctagttagctaggacTCCGGTACACAGCAGCAGAAGAAAGGTTGCTAGTTAACGATAGCTAGGACACCGGTAGACAGTGTACTTCGCCCATGCCTGTCATGCACTAGTTTCCCGCAGTTCTGGTAATAATAGCAAGGGCAGGTGTTTAGCAGGTGGGAATGAAGGACACTGTGTGCTAGCTTGTTAGCTTACTAGCTAGGACGCCGGAACACAGCTAGCGGGGAAGACTCCTGCAGATAGCTGTCGGGTGCGGTTCCTGTGGATGATTGGAATATCCAGCTACTACATTTCTTGCCTTAACCCATTAGCTATTTATCTCCTCTAGGTGGCAGTATTTAGTCTTACGTTAATGACTCTTGAGCTCCTGAAAGTTTATCCTCATCTCGGAGGAAATTGTTTGCACGTTATATTGGAAAATGACACTGTATATCACTGTTACTGATTGATTTAATTTTAAGTAACTTAAAAAATATTCCAGACATAACTACCTTGAGGTTGCACTAATGTCGCCTACTTGATGAGACTAAAGTCATAATTGTGAATGCAGAAAACAAGCGTTTGATCCAATGAAAGTTGATAGGCATTGATTGTCCATGAGGGAACAGACAATCTTTGGCCATCTTCATCATTTTCATATGTTCAAGGGCACTTGGAGGGTCTTGAAGGGATCCAGCTTTTTGTCAGAATTGACTTTTCATATCAGGGCTAGGAGAaattacgcagcaggttaggggAATTAGGTTAAAATTAggaaaatggttagggttatcTAAAATGCACAAAAAAGTGTCTACttttaacatacatttttcaaaagcTGGGTCCAATCTAGACATTACCGACTTGAAGGGAGGCACTTTGACGTCAACACGCGAAGACACTTTTAATCATGTGTGTCATACATGGATGATGACCATGATGTGAATAGTTTTGTGATATTTCAATGATTGTCTTTTTTTCTTTCCAcaaaaaataaaactgaaatggGATGTTGTGTTCATTAAGAGTTATTTACTTTGGcctaaatataaaataaaatatccccacagcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1709872 lncRNA upstream 213936 81614344 ~ 81614635 (+) True G1495723
TU1709871 lncRNA upstream 214717 81613552 ~ 81613854 (+) True G1495722
TU1709861 lncRNA upstream 220282 81608029 ~ 81608289 (+) True G1495712
TU1709857 lncRNA upstream 223035 81605316 ~ 81605536 (+) True G1495708
TU1709856 lncRNA upstream 223346 81605018 ~ 81605225 (+) True G1495707
TU1710181 lncRNA downstream 2040 81849580 ~ 81849895 (+) True G1496010
TU1710198 lncRNA downstream 18904 81866444 ~ 81867444 (+) True G1496024
TU1710200 lncRNA downstream 21874 81869414 ~ 81873116 (+) True G1496026
TU1710201 lncRNA downstream 26121 81873661 ~ 81878079 (+) False G1496027
TU1710202 lncRNA downstream 26121 81873661 ~ 81878079 (+) True G1496027
XM_021569989.2 mRNA upstream 226410 81432188 ~ 81602161 (+) False LOC110494696
XR_005036710.1 mRNA upstream 434971 81392702 ~ 81393600 (+) True LOC118940108
XM_021569988.2 mRNA upstream 447784 81374533 ~ 81380787 (+) True LOC110494694
XM_021569986.2 mRNA upstream 493472 81323567 ~ 81335099 (+) True LOC110494692
XM_021569985.2 mRNA upstream 515311 81284086 ~ 81313260 (+) True LOC110494691
XR_005036711.1 mRNA downstream 14011 81861551 ~ 81862479 (+) True LOC118940109
XM_021569992.2 mRNA downstream 43017 81890557 ~ 81892633 (+) True LOC110494700
XM_021569994.2 mRNA downstream 57228 81904768 ~ 81911784 (+) True LOC110494701
XR_002469402.2 mRNA downstream 79111 81926651 ~ 81927921 (+) True LOC110495197
XM_036948438.1 mRNA downstream 176527 82024067 ~ 82026625 (+) True LOC118940161
TU1709526 other upstream 226414 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 490408 81337017 ~ 81338163 (+) True G1495362
TU1709446 other upstream 534645 81293440 ~ 81293926 (+) True G1495346
TU1707042 other upstream 2443134 79382645 ~ 79385437 (+) False tusc2
TU1710572 other downstream 315666 82163206 ~ 82169750 (+) False G1496351
TU1712329 other downstream 1766725 83614265 ~ 83634495 (+) True G1497918
TU1712638 other downstream 2032392 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 2278297 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 2648389 84495929 ~ 84497398 (+) True G1498913

Expression Profile