RNA id: TU1710167



Basic Information


Item Value
RNA id TU1710167
length 507
RNA type TUCP
GC content 0.52
exon number 2
gene id LOC110494698
representative False

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81828571 ~ 81847540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCCAATTGTTTGAACTGGCCACTGAATGAACCAAACTTTGTCAACTTCTCTTCCATTTTACAGACCAGCACTTATTCAGACTACGAAGTGTTCATTTCCCCAGCACAGGGACACTACTTGTAGTAGTGGAGGTAGACTTAGACTTCTGTAGAGGTCTTTTGCTTCTTACACAGAGAAGCCCTGTTCTGAAGTGCCTCATTGAGAGGAGAGCTCCCCATCTCAGCCTGTAGAGCTCATCTGGAACTAGGAGGAGCTGCTGGCAAGGTGCCCATTGCTGTGTAGCAGCCATGCCGCCTGCCATGGGAGGACCCCAGGGGTACACCCCTCCAGaggggggctggggctgggcagtAGTGGTGGGAGCCTTCATCTCCATCGGCTTCTCCTATGCCTTTCCCAAGTCCATAACCGTCTTCTTCAAGGAGATTGAGGTCATTTTCGACTGCACCAGCAGCCAGGTGTCATGGATCTCCTCCATCATGTTGGCAGTGATGTATGCCGGAGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1709872 lncRNA upstream 214097 81614344 ~ 81614635 (+) True G1495723
TU1709871 lncRNA upstream 214878 81613552 ~ 81613854 (+) True G1495722
TU1709861 lncRNA upstream 220443 81608029 ~ 81608289 (+) True G1495712
TU1709857 lncRNA upstream 223196 81605316 ~ 81605536 (+) True G1495708
TU1709856 lncRNA upstream 223507 81605018 ~ 81605225 (+) True G1495707
TU1710172 lncRNA downstream 3514 81836615 ~ 81836892 (+) True G1496001
TU1710173 lncRNA downstream 4970 81838071 ~ 81838288 (+) True G1496002
TU1710177 lncRNA downstream 8648 81841749 ~ 81842030 (+) True G1496006
TU1710166 lncRNA downstream 11647 81844748 ~ 81847533 (+) True LOC110494698
TU1710181 lncRNA downstream 16479 81849580 ~ 81849895 (+) True G1496010
XM_021569989.2 mRNA upstream 226571 81432188 ~ 81602161 (+) False LOC110494696
XR_005036710.1 mRNA upstream 435132 81392702 ~ 81393600 (+) True LOC118940108
XM_021569988.2 mRNA upstream 447945 81374533 ~ 81380787 (+) True LOC110494694
XM_021569986.2 mRNA upstream 493633 81323567 ~ 81335099 (+) True LOC110494692
XM_021569985.2 mRNA upstream 515472 81284086 ~ 81313260 (+) True LOC110494691
XR_005036711.1 mRNA downstream 28450 81861551 ~ 81862479 (+) True LOC118940109
XM_021569992.2 mRNA downstream 57456 81890557 ~ 81892633 (+) True LOC110494700
XM_021569994.2 mRNA downstream 71667 81904768 ~ 81911784 (+) True LOC110494701
XR_002469402.2 mRNA downstream 93550 81926651 ~ 81927921 (+) True LOC110495197
XM_036948438.1 mRNA downstream 190966 82024067 ~ 82026625 (+) True LOC118940161
TU1709526 other upstream 226575 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 490569 81337017 ~ 81338163 (+) True G1495362
TU1709446 other upstream 534806 81293440 ~ 81293926 (+) True G1495346
TU1707042 other upstream 2443295 79382645 ~ 79385437 (+) False tusc2
TU1710572 other downstream 330105 82163206 ~ 82169750 (+) False G1496351
TU1712329 other downstream 1781164 83614265 ~ 83634495 (+) True G1497918
TU1712638 other downstream 2046831 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 2292736 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 2662828 84495929 ~ 84497398 (+) True G1498913

Expression Profile