RNA id: XM_036950752.1


Basic Information

Item Value
RNA id XM_036950752.1
length 1471
RNA type mRNA
GC content 0.56
exon number 3
gene id LOC118940497
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81936829 ~ 81973979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAAGGAGCTCTAGGCACTAGGACCTGTAGCATTCTCCCCAGCTGAAAGGAGCTCTAGGCACTAGGACCTGTAGCATTCTCCCCAGCTGAAAGGAACTCTAGGCACTAGGACCTGTAGCATTCTCCCCAGCTGAACGGAGCTCTAAGCACTAGGACCTGTAGCATTCACCCCAGCTGAAAGGAGCTCCAGGCACTAGGACCTGTAGCATTCTGCCCAGCTGAAAGGAGCTCTAGGCACTAGGACTCCACTGACTTTTCAGAACAATCGATTTTCAAACAAGTGCAAGAGCCTGAGTGGATTGTCTTCCCTCAATGAGAAGGAGACCTGACTTATGAAGACAAACCTGTGGAATAACTCACACACTGGAATATAGCTTAGTACTGGTTGCGACATCCATTtgtgaagaggggagaggagccgTTGCAGAGggGCCAGGGCCGAGCTGGGGGCCACAGAGAGCTAGAAAGACAGGCCTGATGGCAGGAGCCTGGAAGGCAGTCCGCTCTGAACACGTGCTCTAGGAGCCCGCCCCGCCTGGGGCCACAATTCCTGGGGAAGAAACACGGCACAGGTGTGTGTCCATGAGGTCGTCCATGCTGGTCTTGATCCTCGTGGTCAGTGCCCAGGCCGTGTGCACCATGGGAGGGGACTTCTGCCCCCCGGTCTCCGCTCAGCAGCACCCTACCCCTAACAGGACCCCTAACTCTGCCCCCACCGTGGACCCCAAACTCTTCACCAAGCGACGCTACCGCTCGCCCCGCGTTCTCTTCAGTGCACAGCCGCCCGACAAAGAGCCCACAGGACGCCAGGGGTCCGGGGCCAGCAGGGCAAGGCGCATGGTAGGTCAGCCACAGCACCGGGGGGTGTactctgtgtgtgagagtgtcagCAACTGGGTGGGCAACAAGACCAAGGCCACAGATATATCTGGCAATGAGGTGGAGGTGCTCCCTGACGTCAACATTAACAACGTCAAGAAAAAGCAGTACTTCTTTGAGACCACATGCCGTGGCGCCCGGGCGGGCAGCTCTGGCTGCCTGGGCATCGACGGGCGACACTGGAACTCCTACTGCACCAACTCGCACACCTTCGTGCGGGCGCTGACTTCCTTTAAGGACCTGGTGGCCTGGAGACTGATCCGCATCGacgtggcctgtgtgtgtgtgctcagccgAAAGTCCTGGCGACAGTGACCGTACTGTAATCACTAGTCCTGTAGTCACTGCAGTACTGACCGACAGGACCACATGGTTACTGTTATGAAGTCACTGCAATACTGCATTTCCAACCCCCCACCCCACTGGAGTACTGcatttcaaccccccccccccacccccaccggAGGACTCTGACACTCTCTGCCCCACCCCAGCCCTCAGCTCACAGTTAATTATTGATTGAGGACTGCATGTATATAAACCAACCATTTGTTTAttagttgttgttgttatttattAAACACCTCAGTA

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K02582 NGFB; nerve growth factor, beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1710267 lncRNA downstream 40152 81896454 ~ 81896677 (-) True G1496087
TU1710250 lncRNA downstream 85942 81850617 ~ 81850887 (-) True G1496070
TU1710244 lncRNA downstream 89294 81844065 ~ 81847535 (-) True G1496064
TU1710246 lncRNA downstream 92921 81843128 ~ 81843908 (-) True G1496066
TU1710239 lncRNA downstream 98094 81838346 ~ 81838735 (-) True G1496059
TU1710485 lncRNA upstream 48427 82022406 ~ 82063840 (-) False G1496284
TU1710489 lncRNA upstream 48427 82022406 ~ 82063840 (-) False G1496284
TU1710486 lncRNA upstream 48475 82022454 ~ 82063840 (-) False G1496284
TU1710520 lncRNA upstream 74619 82048598 ~ 82056759 (-) True G1496303
TU1710483 lncRNA upstream 83627 82057606 ~ 82063840 (-) False G1496284
XM_021569995.2 mRNA downstream 10656 81913547 ~ 81926173 (-) True LOC110494702
XM_021569991.2 mRNA downstream 49260 81871074 ~ 81887569 (-) True LOC110494699
XM_036948436.1 mRNA downstream 447875 81481282 ~ 81488954 (-) True LOC118940159
XM_036950750.1 mRNA downstream 516499 81396070 ~ 81420330 (-) False LOC110494695
XM_036950751.1 mRNA downstream 516499 81396070 ~ 81420330 (-) True LOC110494695
XM_036948437.1 mRNA upstream 12933 81986912 ~ 81988396 (-) True LOC118940160
XM_021570003.2 mRNA upstream 182054 82156033 ~ 82159964 (-) False LOC110494709
XM_036950754.1 mRNA upstream 182054 82156033 ~ 82163096 (-) True LOC110494709
XM_021570005.2 mRNA upstream 189162 82163141 ~ 82169801 (-) False LOC110494710
XM_021570004.2 mRNA upstream 189460 82163439 ~ 82167610 (-) True LOC110494710
TU1709673 other downstream 609716 81326685 ~ 81327113 (-) True G1495552
TU1709656 other downstream 622514 81311747 ~ 81314315 (-) True G1495538
TU1709315 other downstream 821591 81110445 ~ 81115238 (-) True G1495222
TU1709210 other downstream 832915 81093519 ~ 81103914 (-) True LOC110494689
TU1709196 other downstream 870147 81065971 ~ 81066682 (-) True G1495113
TU1710622 other upstream 198490 82172469 ~ 82174852 (-) False G1496390
TU1710627 other upstream 198490 82172469 ~ 82174852 (-) True G1496390
TU1710947 other upstream 261149 82235128 ~ 82240264 (-) False G1496689
TU1710950 other upstream 261149 82235128 ~ 82245987 (-) False G1496689
TU1711213 other upstream 680493 82654472 ~ 82661638 (-) True G1496921

Expression Profile