RNA id: XM_021570003.2


Basic Information

Item Value
RNA id XM_021570003.2
length 2157
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110494709
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82156033 ~ 82163096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCCAAACAGTGCCTGGTCAAATATCCCTGTCCAGTGTCCACTCCACACTGTGCTGGTTGGGGGAGGAACTCGACCCCTTTTTCCCCTGCTCCTACTTCTCTCCTTGTGCCTGTATCTATCTCCCTGGAAAATGAAATATGCTAATAACAGAGATATGAAGCACCCTCTAGTAAGGATGAGAAAAGTTCATTCCCAGTCCTCTCTGGGGAGTGACACAGACTCGCAACCTGTtctgaaagaagaggaggaagaggagaaggtaacactagaggaggagaaagagacagaagaggagaaagaaggggacGTATTGACGGACTCAGAGCTGGATCCTGAGTTGCCTGAGGAGTATTCCCATGGCCTGGAGGACCTGAGGTGGAACCTGAGCTCTCTAGAGAAGGCTGTATATCTCAGCCTGCCACCGTGGGTTCAGAGAGCATTGCTGTGCAACCTCATGGCTAAATGTGGTGTAAACAACTCATTCTTCCCAGCCCGTCTGCTGTCCTACCTGCTGCTGCCCTACATACTGCCAGCCTCTATCTTTCTCCATGTCAACTACAGGGTGCTGTGTTGGCTCCGCCAAGTCCCAGGGAAGTGGCTGTGGCCGGGTGTGGAAATGGCTGTGCCATTCTTTCTAAAGCTCTCTCACCCCAGGAAGAACCTCATGCACAGGTTGTGGCCCTCTGGTCCTGTCAGGTTTTGGCCCGGTGGTCCTGCCAGGTTGTGGCCCTGCAATCCTATCAGATTGTGGCCCTACAATCCTGTCAGGTTGTGGCCCTACAATTCTGTCGGGTTGTGGCCCTGCAATCCTATCAGGTTGTGGCCCTGCAATCCTATCAGGTTGTGGCCCTTAAATCTTATCAGGTTCTGGCCCCTACGCTTTCTGGCATCTGCCAAAGAAACACATACACAGTTTAAGAGTGCAGAGGATCCTCCTCCACAGCAGCGCCGTCGCTCTGTCCTGCGGTTCCAGCTGTCCACCACCAGCACCCATTACACAACCGAGACCCCCAACACCCCAACCGAGAGCCACCTTGACCCCCTGggcttctccctcctcttcaaccTGGAACTAGAGATGGACAACCAGCCCAATCAGCCCAACAACCAGTCTCTACTCCACCATAGCGAGAGGCTGCTGCCACTGGAGTATGGCCCCTGCATAAAGGGAGAGGCCCTGGCCTCCCCACACATCTCCTACAtgggggtggaggaagaggaggagaggatgtctCAGGGAGGGGATGAGGTGGAGGAAGGGTTAGCTCTCCTCCGCAGCCTTCCTGTGGAGTGTGCCAATACTGGCTACTAATGTTGGCTGACTTTAGGGTCAGGAGTTTTTCCCTGATCGGGTCACATGGTTGGGAATGTGATTTTCTCAGCAAATGAATAGCAGACCTAAGTCTGCCTGTATCCAATTCACAACTAGTTTGTACTTTGAAGTATAATGTATGTTGAACCCGATTAGTGAAGTCGACTCTCATGATAGCATGAGGCAGTAAGCACAAAAGCTCTCTTTCTGCTACAGTCTTCCATTCTCACTCCAGGTTTGACAATGACTGGAAGGAATGATGATTAGGGTAGAGTCCCTCTTAGTCACGTCACATAGTCAAAATAATTCCCTCATGTCCCTTATCAGCTGACTTCCAGGTAAAGTAGTACTTACATTATATTAGATGTATTTTATGAAATTGTATATGCAGCGCTTGAAAGAGACACTGGTCTCAATGGTGAcaccctgattaaataaaggtaaataatgtCCACAGGACATGTATTACACCTCAACTAGTTTAATCAGATTACTTTCAGGTATTTGATCGTGGGTATTGTTCATCAAGTGAGTGGCAGTCCTATGAGTGGGGGGCTACCTGGCAGAGATGAAAATATAATCTTGAACGGAAAACTCAGTTCGCCCACTGGCGGTAGGAATTTACAGCCTTGGGCACAAGAAAGGCAGCAAATAGCAAGCAGGACATTTTTTCCTATCTGGTTACTATCAGTGTTTGATAGGATCCTAATAAACACCATTCATTTGTTAGCTGACTAGTAATACCTTTGAGACAATGTTAAGCCTTTTCACCTTGACCAACTGTTTTGCTGAGGTTGAGTGGAACTTAGTTCATTTAAATAAAAGGAATTAACAAATGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1710634 lncRNA downstream 5871 82145162 ~ 82150162 (-) False G1496396
TU1710635 lncRNA downstream 5871 82145162 ~ 82150162 (-) False G1496396
TU1710636 lncRNA downstream 5871 82145162 ~ 82150162 (-) True G1496396
TU1710555 lncRNA downstream 26575 82129190 ~ 82129458 (-) True G1496337
TU1710536 lncRNA downstream 67594 82088224 ~ 82088439 (-) True G1496318
TU1710680 lncRNA upstream 61488 82221452 ~ 82221665 (-) True G1496439
TU1710681 lncRNA upstream 62343 82222307 ~ 82222515 (-) True G1496440
TU1710948 lncRNA upstream 76248 82236212 ~ 82245221 (-) True G1496689
TU1710961 lncRNA upstream 87344 82247308 ~ 82247517 (-) True G1496691
TU1710969 lncRNA upstream 117276 82277240 ~ 82278308 (-) True G1496699
XM_036948437.1 mRNA downstream 167637 81986912 ~ 81988396 (-) True LOC118940160
XM_036950752.1 mRNA downstream 182054 81936829 ~ 81973979 (-) True LOC118940497
XM_021569995.2 mRNA downstream 229860 81913547 ~ 81926173 (-) True LOC110494702
XM_021569991.2 mRNA downstream 268464 81871074 ~ 81887569 (-) True LOC110494699
XM_036948436.1 mRNA downstream 667079 81481282 ~ 81488954 (-) True LOC118940159
XM_021570005.2 mRNA upstream 3177 82163141 ~ 82169801 (-) False LOC110494710
XM_021570004.2 mRNA upstream 3475 82163439 ~ 82167610 (-) True LOC110494710
LOC110493272 mRNA upstream 41541 82201505 ~ 82201980 (-) True LOC110493272
XM_021570512.2 mRNA upstream 45471 82205435 ~ 82208611 (-) True LOC110495198
XM_021570016.2 mRNA upstream 270058 82430022 ~ 82443873 (-) True LOC110494717
TU1709673 other downstream 828920 81326685 ~ 81327113 (-) True G1495552
TU1709656 other downstream 841718 81311747 ~ 81314315 (-) True G1495538
TU1709315 other downstream 1040795 81110445 ~ 81115238 (-) True G1495222
TU1709210 other downstream 1052119 81093519 ~ 81103914 (-) True LOC110494689
TU1709196 other downstream 1089351 81065971 ~ 81066682 (-) True G1495113
TU1710622 other upstream 12505 82172469 ~ 82174852 (-) False G1496390
TU1710627 other upstream 12505 82172469 ~ 82174852 (-) True G1496390
TU1710947 other upstream 75164 82235128 ~ 82240264 (-) False G1496689
TU1710950 other upstream 75164 82235128 ~ 82245987 (-) False G1496689
TU1711213 other upstream 494508 82654472 ~ 82661638 (-) True G1496921

Expression Profile