RNA id: XM_021570010.2


Basic Information

Item Value
RNA id XM_021570010.2
length 4093
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC110494715
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82277350 ~ 82353407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTTTCCAGTGTAGTGCGTTCATTGATTTCATACCAAAGTCATACTTAACATTCCACTTACACTGTCAAACCAGGAGAAATATTACTGAAAACTATAAGGCGCCAAAAAAATAAATAGTATAAAAATAAGTAAGTTATCTTCGCTTTTGTGAGAAGGGGTGACTTCCAAAAAAAGCTGCTTGGATCCTGATCACTTTCCTCCTAACTTGTTCTCCATAAGAATCAAGTCTTTACATACCCGAGGATTGACAGACAGAAAAAGGCAAATTGGAGGAATACATAACTCGATATTTTACGCGCTGTTTTACTGCACCCCATAGatcCTCTGACTGTGGGGCTCGTCGTCGGGCCCAGGGGGAGCCGCCACCATTGCTTCCAACGAGTGGAGTGCCAACGGTAGCCCGGAGGATGGGCTGGAAGAGGGGAACGATGAGCTGGACAAGGCCATGGACGGGGACGCCGAGGGGGTGTGGAGCCCAGACATAGAGCAGAGCTTCCAGGAGGCCCTGGCCATCTACCCTCCCTGTGGACGGAGGAAGATCATCCTCTCAGATGAAGGCAAGATGTATGGTCGTAATGAGTTGATAGCTAGATACATCAAGCTGAGGACAGGCAAAACCCGCACCAGAAAACAGGTTTCTAGCCATTTGCAGGTTCTCGCCCGGAGAAAATCTCGCGAGATCCAGTCAAAGCTGAAGGCCATGAATTTGGACCAGGCATCTAAAGACAAGGCCCTCCAGAACATGGCAGCGTTGTCGTCTGCTCAGATTGTGTCTCCGAGCCTGATCAAGAGCCAGCTACCCCCACTGCCCCACTCTCCCTACCCCCCGCAAGCCAGGTTTTGGCCAGGCCCTATCCCAGGACAACCCGGCCCCTCTCAGGAGCTGATTCTAGAGCTCAACCAGGGAAGGACTCCTGGGTTTGGCCGCACCAGCTATGCTATCAAACCTTTTGCACCGTCTCCATACACAACTCTACCaggccctccccctccccctataTCAAactaTGAGCCTTtggcaccccccctccccccggcTGCTACGGCGGTGCCCGTGTGGCAGGACCGGACCATCGCGTCCTCCAAGCTGCGGATGCTAGAGTACTCTGCCTTCATGGAGGTGCAGAGGGACCCTGACAACTACAGCAAACACCTGTTTGTCCACATTGGCCAGACCAACCCATCCTACAGCGACCCTCTGCTGGAGGCAGTGGACATCAGGCAGATCTACGACAAGTTCCCAGAGAAGAAGGGCGGACTCAAAGAGCTTTATGAGAAAGGCCCACAGAACGCCTTTTTCCTAGTCAAATTTTGGgCGGATCTCAACAGCAGTGGCATGCAGGACGGCCCAGGCTCCTTCTACGGAGTCAGCAGCCAATACAGCAGCTCTGAGAACATGACCATCACCGTCTCCACCAAAGTCTGCTCCTTCGGCAAACAGGTGGTCGAGAAAGTAGAGACGGAGTACGCccggatggagggagggaagagtgtCTACAGGATCCACCGCTCTCCCATGTGCGAGTACATGATCAACTTCATCCACAAGCTCAAACACCTGCCAGAAAAATACATGATGAACAGTGTTCTGGAAAACTTCACTATACTTCAGGTGGTGGCAGACCGTGACACTCAGGAGACCTTGCTGTGTATAGCGTTTGTGTTCGAGGTCTCAACGAGTGAACACGGGGCACAGTACCACGTCTACAGGCTCGTAAAAGACTGACCCACCCACCGCTCTACCACGTCTACAGGCTCGTCGAAGACTGACCCACCCACCGTTCTGcaggaaggtttgggaatcagcTGACGAAGCACTGCGTgacaatatgtacagtacagactGCTCAACTGCCAAGTAACATTCAAAACGACGTTAGAATGAACTGACAAGAAAACATTTTAAACTTCCACACATTTATGTGAAATAGGAAAAAGGAGGAAGTCTCTCAAAAGACAAGAAAGGAAATTAGGAGAATTCATTGTTTTGTTTTAAAGGCAACTTTTTAACCCATATAGTTAAATATGCTGAGACAAGTGGGTCAAATTGGTAATGACAGTAAATGTACAGTAGGTTGAGATTCACTGAGGGTATGAGAAAGTGAACAAGGTTAAGAGCTTTGTCTCCAAGGGAACACACTCTAAGCAATATTAGAAGAAGTGGATAGATTGGAATGGTACAGGTACAACAACCATGGAAGAAGAGCAAACACAAAATAATCTAAACGTAGAAGGGCCCTACCGAGGGGTGTTTATAAATGAGATAGGATGGCAACCAAGTGCCTTTCTCCAAAGACAAGTATTGATCAGTTGCCAGCCACTCTGGAATGCCTTATTTACTACCTCTTGTCTTTAAATAAATTGAAATAAAGTGGACAGATGTAAATGCATCATTGAATAGGAGAATAGGAAACTGAACATGACTATGCAGTTCATCCTTTCTCATCTAGATCCTTGAAGCGCACTTCTGATCCAGGAATATTATGTTATGGATTAAACTATTATACATTTTTCTCGTGATGTGTTATAATGAATGGTTACAAGTTTAGCTGCAGTCCACGTGTACAGCAAGGGCATGGCATGATCAGATCATTCAGTTTCCAATCCCTGGGCTTTTACGGGTCtctagacaacaacacatcaatgTGCTGTGGTGCACTTAAAAGATCAAGAAGGGGTGAAgcaacaaatatttttattttcagCCTTTAATTATGTTATTGAAATGAACCGTTTCTGTACTGGGAGTCAGCGGATGCAACAGGAATATGTGTTACATAGGATTCTTTTGGGGACGTGTTTATATTTGTGATTAACATTAACACTGTTTTCTTAAAAACATGGCttgagaatcaaatcaaatgaaatgttatttgtcacgtgcgccgatacaaccttaccgtgaaatgttcaCTAGATTAGAATTTGCCAAATTGGAACTGACCAAATTTTACAGTGAGTTTTAACTCATGTAAGAACTCATGGTATTCTAATCCAATCTCCCCATTCAAGAGATCCCAATTGATGGATATCACTTTCAATCTGgcaaggcggcaggtagcctagtggctaagggcgttgagccagtaaccgaaagtttgttGGTTTGAATTCCTGAGCCGGCACAGTGggaaaatctgctgttctgcccatGATGTTGCTTAAGGCAGCCACATTTCggctgaatgcattcagttgtacaactgactacgtATGCCTTTTCCCTAACCCTACATGGCATGGCGTAAGATAAGTTTCTCTTTCCTAAATTATATTAATAAAAACAAAAGCTCTCTCTCATTTTATGAGCGAACCTTCAAGAAATTAATCTTAATTTGCCAATGCCATCAGCCAATGAAAAAACAATTTTATGTTTTGAAAGAGAGCTATCCTCTGTGCTGTGGTGTGTGACCATTGATTGTTATTTATATTGAAAAGAATGGTGGGAGggcagggctgggctgggatatgGGCCATATGTGTTTATCCTTTGCCATTGAAATGGTGGTGTTACAAGTATTGCTGAGCTGAACTTTATCCTAATGACACAATAACTTTCATCCCCTAGCTAGGGGATGGTCTCTGCCTTGGACGGTTCACTGGACTTCTGTCATAAGAATTCATACATCAGACTTTGTATGGTGGATTTAGTACACCAGGCTTTGAATGTCATACTTCAAGAGCTAGATTTAAAACAACTGCTTAATCTTTACTAGTGGATTTCTCAATTTTATCTTTTTTTACAGGCCCATGTtttttattatcattatcataatGAATTGTTTTCTGTTCGTTTTTGTGACTTTCAGCATCCGGTGAAAACGTGTGTTTTTGTTGACATTGATGATGAGATACTGTATCGTATGTATCATAATCTGAATGGTATGGGCAAGTTTGTTTGGTTAAAAGGTGCTTTATTGTGGCCTTGGTTACCAATTGTGCATTGCATTTTAGTATTTTCTgttatcttcaaactaagggggTTGTATtatataatcaaatcaaaatgtataatCTAACAATAAAAGACGCATGGTGCCTTTGGGGCCATTTTCCCCTGAAAACTCATTAAAACAGGTTTGTTCATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1710699 lncRNA upstream 464 82276434 ~ 82276887 (+) True G1496455
TU1710718 lncRNA upstream 17658 82259452 ~ 82259693 (+) True G1496471
TU1710713 lncRNA upstream 28950 82248202 ~ 82248401 (+) True G1496466
TU1710711 lncRNA upstream 30735 82246385 ~ 82246616 (+) True G1496464
TU1710684 lncRNA upstream 52447 82224665 ~ 82224904 (+) True G1496443
TU1710781 lncRNA downstream 62843 82416250 ~ 82416503 (+) True G1496529
TU1710787 lncRNA downstream 72788 82426195 ~ 82426410 (+) True G1496535
TU1710789 lncRNA downstream 74264 82427671 ~ 82427927 (+) True G1496537
TU1710801 lncRNA downstream 94743 82448150 ~ 82448503 (+) True G1496548
TU1710805 lncRNA downstream 104860 82458267 ~ 82459046 (+) True G1496552
XM_021570008.2 mRNA upstream 1357 82264060 ~ 82275994 (+) False LOC110494713
XM_021570007.2 mRNA upstream 1358 82264062 ~ 82275993 (+) True LOC110494713
XM_021570006.2 mRNA upstream 43389 82226778 ~ 82233962 (+) True LOC110494711
XM_021567528.2 mRNA upstream 56692 82218941 ~ 82220659 (+) True LOC110493273
XM_021570002.2 mRNA upstream 121462 82152171 ~ 82155889 (+) True LOC110494708
XM_021570015.2 mRNA downstream 38036 82391443 ~ 82403512 (+) True LOC110494716
XM_036950757.1 mRNA downstream 108280 82461687 ~ 82518805 (+) True LOC118940498
XM_036950760.1 mRNA downstream 180114 82533521 ~ 82636002 (+) False LOC110493275
XM_036950761.1 mRNA downstream 180114 82533521 ~ 82636002 (+) False LOC110493275
XM_036950762.1 mRNA downstream 180114 82533521 ~ 82636002 (+) False LOC110493275
TU1710572 other upstream 107601 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 444250 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 675194 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 939188 81337017 ~ 81338163 (+) True G1495362
TU1709446 other upstream 983425 81293440 ~ 81293926 (+) True G1495346
TU1712329 other downstream 1260858 83614265 ~ 83634495 (+) True G1497918
TU1712638 other downstream 1526525 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 1772430 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 2142522 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 2162710 84516117 ~ 84517180 (+) False G1498912

Expression Profile