RNA id: XM_021570018.2


Basic Information

Item Value
RNA id XM_021570018.2
length 4580
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC110494719
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82668822 ~ 82717448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taacccccccccccacacacccaaTTGATGACAAGTAGGATTTTTATTGAGTAGCCCTTCAGCCAATGAGGTTGCAGTGCCGGGAAATACAGCAGTGAAACGGCACATAGCTTTGATGCTGGTGCTGATTTGCAGTGTGAGAGAATGTTAATGTGCGCGtgtatttcatttcattttcccCAGATCTGATTAACTCCTCACTACAGGCAACTgttttgtgtcagtgtgtgtgaagaGGGCTTTCGTGAAGAGACCCCCGGGGGTGACTGCGGGGACTGAGCAGTTCCATGAGGCTTATCTTCTTCAGAGTGGGATAAACCCAAAAAACTATTAATCTCAAACATTTCTTCTCCTAAGACCTTATCTCAAGTGTCCTGCAGGTACTACAGACAGAagtaccctccctctctctctttttctccaggAGACAACAGCTCTCCGATACAGggactgtgtgtgtggccTAGTCATTGAGGATGAAGTGGAACCTGTTCAAGAATAAGCCTGAGGCCATGGTGGGTCCAGAGCCCACGGGCACCGGCGCCACTATGACCGCAGCCCCAGCCGTCGCCATCGCCACCACCGTGGCTGAACCCCCAGGCAACGGCACAGTTTCCAAGAACGACATGTTCGAAGAGATCAAGAGCAAGTTCATGAACGAGATTGATAAGATCCCATtgccCTCCTGGGCCATCATAGCTATCGCTGTGGTGGCCGCCCTCCTCATCCTCACCTGCTGCTTCTGCATCATCAAGAAGTGCTGctgtaagaagaagaagaacaagaaggGCAAGAAGGGCAAAGATGGCCTCAACATGAAGAACATGAAAGGAGACGAGAaacaggatgatgatgatgatgaaggcgAGACAGGCCTCacggaggaggagaaagaggaggaagagaaagaagaggagaaactTGGCAAGCTGCAGTACTCGCTGGACTATGACTTCCAAGACAGTAAGcTCACAGTGGGAATCCTCCAAGCTGCTGATCTTATCTCCATGGACAGCGGAGGTACCTCTGACCCGTACGTCAAGGTCTTTGTCCTCCCAGACAAGAAGAAGAAGTTTGACACCAAGGTTCAAAAGAAAAACCTGAACCCTGTCTTTAATGAGTCATTTGTTTTCAAGTTACCATATGATGAACTCGGTGGGAAAACCCTGGTGATGTCAGTCTTTGACTACGACCGATTCTCCAAGCATGACATCATTGGAGAGGTGAGGATCCCCATGAACACCATTGACCTTGGACAGCCCATCGAAGAATGGAAGGACCTGGAGAGTGCAGACAAAGAGGAGCCTGAGAAGCTGGGAGACATCTGTATCTCTCTTCGTTACGTGCCCACCGCTGGCAAACTCACTGTCTGTATCCTGGAGGCAAAGAACCTCAAGAAGATGGACGTGGGTGGACTGTCTGATCCCTATGTGAAGATCGCATTGCTGCAGGGAggcaagaaactgaagaagaagaagactacAGTGAAGAAGAACACACTGAATCCGTACTACAACGAGTCCTTCAGCTTTGAGATCCCAATGGACATGATGCAGAAAATTttggtggtggtgacagtgtttgaTTATGACAAGATTGGCAAGAATGACGCCATTGGGAAGATATTTGTGGGCAGCAAGGCGACGGGCCCTGGTCTGAAGCATTGGTCTGACATGCTCTCTAACCCCAGGCGTCCCATTGCCCAGTGGCACCCACTACAACAGGAGGAGGATATAGATGCGGCACTGGCAGGTTTAAATGCAAAAAAGTAACTTAACTTGTCCGATTGATTACCAACTAACCAACTAACTCAGAAACCCTCCCTCCCAACTGCCCTACACTGCATGAAACTCATGACTTCCACATGATTCTGTCATGTCTATttgaaacactgaacaaaaaaaaaagaaacatctaaAATATCAGCTTATTCATAATTAAATCGAAGAACATAAACAACACTTTTCCCAACACCATAGCATTTCGCGTATTTAGTgtaaagagagaagagggagattgAGCGataaattgattgattgattgataaattGATCTGTGTTTCATTTGAACATGCTTTTTAGGAACAGATGCTTAGATGCTGACAATGAAAGTTTGGAGAAAGACTCAATGAAATTGATGCTGGTTATAGCTTCTTCATTTAGTTTATAGAACATTGTGCATGCTTTACTTATGCTCTCACTGCTCTACATAAACCATGCCAAACTGATTCCCATTAGCATATATCTTGTTCTCAACCCATAAGTGTGCCATATCTTGCAGTAGATTTTAGTATTGGGACATTTCTCACATAAAACAGTTTTTAATCTACTAATGGGAAGGGTTTAGGTGAGATGGTAGGTATTAAGGTAATACAATGCAGCAATTAATTCCAGAAAGTCTTTCTGAAAGAACTTTACAATGCAATGTTTTTTTGTTccaattgtattattattattattattattattatttttatttttattatatgtATTCCCATATATAAGAGAGATGGACATATTGTGGCAAAAAATTATATTTGGCTTTGCAGTTAAAAATGATTACTTATCAAACACGATTCATTTCGATGCCGTTATGGACAGGGTCCATACACCTTCCAGTGTTTTCAGTGTGAAACCCAGACTGGGATGAATTCATGGGTGCCTTTAGGCTCTCAACTCAGAGTGCACTGAGGGAAACTGTATCCCTGGCAAACGTCATAATGGCACAGTCCAAAAGGAAACTGCAATTGTGCTGCAGACCTACTTTGACCCACTTGGATGTAAAAGTGATTACTTATCCATGTCCAAAGTAAAGATGATTGAAGAGCTATCACTGTCATCCAAAACCATGACGACCATGCTTTGTTAGTGATGAGATATTTACTACTAATAGCATGTGTTGAAAACACATTTGACCTTTTACTATTTGAAGTCAAAGATACACAATGTTGAGGATGTATGTtctagaaaataaagaaaaatgatcAATCATATTCTACTACGACAGCATTGCACCCTGTACACTATTGTGAGCACATTTTTGGCATTAATGCTATCGAGATGAAAGAAACATATGTTATAAGATGGGACCATATGCTTGTTACAGCCACTGCCTGTGAATTGTAAAGCACTCTGCATCTCTGAAATGACTGATACAAACATACTGGAGGGGATGTTTTCTCAGTTTAAAAGTGTGTTTGCATGAAGGCCCAACGTCTATTTCTCTCTGCTGAGGATGACTGTAGTGGTGTGGGTATACATTCAATTATTGGATGTTCACATTGTAATGATGAAAAGTTCATCATCAAGCAACCGGAAATGCAGCATTTGCTTGAAACAAATGAGAGTAAAGTAAGCATGATTTATGCTTTGTGCTTATCTTCATGTCGTTAGCTTTGACTTTTGCACCATGCACTCATCCGCAACCTGCTTAGTATGTAACCCTTTTCTGTAAAACGCCAAAGTCCTGAAACATTGTGGTATTGTCCGCTGTTTATTCAAACCTGTTTTTCCCAAGGGCGTTGTTCGTTAGACATCCTGAAATGTTGATTGCCAGGAGGCCATGGTGTATAAGGTGATCAAACTGAAAGGAGGGGGAACGTTGGCATACTAATAAGTCCATTGATATGTAGTtttgcccccctctctctcgtcctACTGTAAACATTATACAGTGAGAAAATGTTATTATACAGCATGTATCTATGAAATGTTGTAAATAGCAGCATGTTTTAAAGAGGAACCATaattagtgtgtatgtgtgtttgtgtccaatGTCATTTTGATAAtaaaatggagagaaaaatatGCACTGACTACACATTGATGTATTTTCCCTTAAGGGTATAATAGGACTGAACATATGTCTGCATAGTATATGTTGATTTTACAGGCTATTTTCTTGCCTGAAATTCAACAGTGTTacttaatttgtattttatttatatatgtcTACAGTGGACAACCTGAAATGTATGACTACATGCTGGGGCTACAAGTCAAAATGCAATATTACTTACATTTCCTGCTTTCACTTGTATGTGTGCATGATCTTCGATGGCCAGGATTTATTGTGTATTTATTGCAAAAGCAGAACATTTACTAGCTCCTTTGCTTTGTAATTCTAAGTACCGTAAGTGTGTTTCCTTCAAGTATCCTGCCGGAGGTGGTAGTCACCGCCTTATCAAAAATGATTTGAATCTGCTGTGTTGGTTTGACCAGTGTTCTAGTACTAAGtcagactacagtactacacaaatttAAATCCAAGTACTAGACCGTGCTTAACGTTAgattgtttagtcccaggttcatGTTATCAGATATAGCTCATTGTATAGGAGTCAAAGCATGGACTTGTAGCCCCCTTTCAATTACTCTCCCCATATCTGTACCCTGAGTAGTCCGCTGCTTGCTGTCATTCCCTGGTGGCATTGCTTAACATAACagttaaacatgtatttttgtgTATGTTGATTAACATAAGAAGTAAAGCCATACAACTTGAGCTTAAGTTTCTATACTCTGAGCAAAGCCTTATTACTGCTCAATTAAAAACCTTATAGAGATATTTTAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1710855 lncRNA upstream 139861 82528537 ~ 82528961 (+) True G1496601
TU1710854 lncRNA upstream 141109 82527464 ~ 82527713 (+) True G1496600
TU1710846 lncRNA upstream 147650 82520882 ~ 82521172 (+) True G1496592
TU1710845 lncRNA upstream 148717 82519847 ~ 82520105 (+) True G1496591
TU1710840 lncRNA upstream 159285 82508369 ~ 82509537 (+) True G1496586
TU1711270 lncRNA downstream 5449 82722897 ~ 82723414 (+) True G1496971
TU1711296 lncRNA downstream 47403 82764851 ~ 82765426 (+) False G1496996
TU1711297 lncRNA downstream 47403 82764851 ~ 82765426 (+) True G1496996
TU1711408 lncRNA downstream 77320 82794768 ~ 82795006 (+) True G1497095
TU1711409 lncRNA downstream 77617 82795065 ~ 82795328 (+) True G1497096
XM_021570017.2 mRNA upstream 7178 82636385 ~ 82661644 (+) False LOC110494718
XM_036950768.1 mRNA upstream 7178 82638693 ~ 82661644 (+) True LOC110494718
XM_036950758.1 mRNA upstream 32820 82533522 ~ 82636002 (+) False LOC110493275
XM_021567437.2 mRNA downstream 529282 83246730 ~ 83264337 (+) False nudt3
NM_001165219.1 mRNA downstream 529429 83246877 ~ 83260689 (+) True nudt3
XM_036950785.1 mRNA downstream 552199 83269647 ~ 83308391 (+) False LOC110494727
XM_036950779.1 mRNA downstream 552199 83269647 ~ 83311364 (+) False LOC110494727
XM_036950782.1 mRNA downstream 571230 83288678 ~ 83311364 (+) False LOC110494727
TU1710572 other upstream 499072 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 835721 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 1066665 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 1330659 81337017 ~ 81338163 (+) True G1495362
TU1709446 other upstream 1374896 81293440 ~ 81293926 (+) True G1495346
TU1712329 other downstream 896817 83614265 ~ 83634495 (+) True G1497918
TU1712638 other downstream 1162484 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 1408389 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 1778481 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 1798669 84516117 ~ 84517180 (+) False G1498912

Expression Profile