RNA id: XM_021570022.2


Basic Information

Item Value
RNA id XM_021570022.2
length 1638
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110494720
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82719144 ~ 82729139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctctctccagatcCCCTCctaccccttctgtctctctgctgttgcATCATGCACACACTAACAAGGGGATACTGGCAGCCATGTTTGTGAAGCTGTGAAATGAGATTTAAAAATGacgaattacatttttttattatctTCATAACAAATTCCAATGTCCAACAAATCCATATTAGTCCATAGCTCAGACCAAAGGGTGAttaaagaaagagggggaaagagagacagtgaagcagaaagagagagagcgagaggctgtCAGGCAGAATGAGAGCCGAGTGCTTTACTTTGAAGTTTTCATTTTTGTTGAATCACCACAGTCCAGAGAGTGCTCTCATTAGCGACACTGCTGTCAAGTCCCAGGCAGTGTCCCTCCCCATACAGTCTACAGCACCGCCCAGCGcccaccctcttcctcctccacagcTCCATCCCTTTTGCTACTCACCTTCCACTCATCTCATCTCAGGATCACTCAACATCACCTGGAGTGAGATCACACTCCTGACCACAGCTATTTCTGTCTCATTAGCACTCTATAATTTTGATCACAATCCTGACTCTGTCCCTTCACCACCTTCATTCACATCACAGGGATTTTAACTGTGTGTCACTGGATTGTTCATGCAGTAGTCTTTTGGAATCAAGTTGGTTGGACCGGACCGCTGGACTCCACATGAACCTCATGCAGTGGAGATTATCCTGCAGCGATGTCATCTCACCTCTCCCCCCGCAACGCAAAGGATCAGCCACGCACAAGAAAGTCATCCACTGATTTGTCTCCCGCTAAACCCTCGCCGACCTCCAGAAGCCTCAAACATGAAAGAGTGTCCAGACTGGACTCGTCTGGTGCTTACGACCGAGAGGCCTATGATGCTCGAAGGGAAAACAGAATGGCAGCGCGGAAAAAAgcagaggaggaggcagggtgcACTGACTATAAGAAGATGTACGAGGAGGCCTTGTCTACCAATGAGAGACTCAAGTCCAGGCTGCAGGGCAGCAAACAGGAGCTGGTATTGGTGCAGACTCAGCTGGAGAGAGTGACACAGAGAAAGATAACCATGACTGAAAGGTCCAATGAAAGGTCCATGCTTGAGACAGAAAAACGGgaAACACGTGTCCTGCAGAAGAAGATATCAGACATGGAAGATGAAGTGAAGGTCCAGACAGAGCTGAAGAATGAGAACCAGAGACTGAAGGACGAGAACGGAGCCTTAATCCGGGTCATCAGTAAACTGTCTaagtgagaagaggaggaaatggaAGAGAGCAGGGGATGATACAGCTTTATTTCCCATGTTTACACCCACTTCTCCaaccccaccacccccaccaacacccccaccaacACCAGTAGTCTTCACACGCAGTTTGCATATTTGCACATTTTTTGTATTCATTTATGGATTGTTATAATGCATAATTATATAATCACAGCACATAATAATACCGTATGAATGTCTGCAAATGTTTAATCTATAAACTGATGTAACAGGTTATATATTATCACGTTTTGTATCACtatgtgacatttgaaatgtttttgttgtttttttttgtttactcCATCACATGAACAGTCTCCTTGTATAAGCCTTGTATAAGTTATTTATAAAGATTTTCTATGCTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1711212 lncRNA downstream 57506 82629246 ~ 82661638 (-) False G1496921
TU1711120 lncRNA downstream 193362 82525497 ~ 82525782 (-) True G1496844
TU1711114 lncRNA downstream 200027 82518798 ~ 82519117 (-) True G1496838
TU1711107 lncRNA downstream 212832 82506018 ~ 82506312 (-) True G1496831
TU1711106 lncRNA downstream 214230 82504695 ~ 82504914 (-) True G1496830
TU1711377 lncRNA upstream 34705 82763830 ~ 82766175 (-) False G1497072
TU1711378 lncRNA upstream 34705 82763830 ~ 82766175 (-) True G1497072
TU1711403 lncRNA upstream 60966 82790091 ~ 82790315 (-) True G1497090
TU1711951 lncRNA upstream 140942 82870067 ~ 82870400 (-) True G1497552
TU1712001 lncRNA upstream 226385 82955510 ~ 82956802 (-) True LOC110494726
NM_001124574.1 mRNA downstream 263291 82449709 ~ 82455853 (-) True csrp1
XM_021570016.2 mRNA downstream 275271 82430022 ~ 82443873 (-) True LOC110494717
XM_021570512.2 mRNA downstream 510533 82205435 ~ 82208611 (-) True LOC110495198
LOC110493272 mRNA downstream 517164 82201505 ~ 82201980 (-) True LOC110493272
XM_021570005.2 mRNA downstream 549343 82163141 ~ 82169801 (-) False LOC110494710
XM_021570024.2 mRNA upstream 3833 82732958 ~ 82749658 (-) True zgc:66479
XM_036950769.1 mRNA upstream 41158 82770283 ~ 82800894 (-) True LOC110493276
XR_005036712.1 mRNA upstream 73534 82802659 ~ 82808001 (-) True LOC118940110
XM_021570025.2 mRNA upstream 90696 82819821 ~ 82849981 (-) False igfn1.4
XM_021570026.2 mRNA upstream 90696 82819821 ~ 82849981 (-) False igfn1.4
TU1711213 other downstream 57506 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 473157 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 478880 82235128 ~ 82240264 (-) False G1496689
TU1710622 other downstream 544292 82172469 ~ 82174852 (-) False G1496390
TU1710627 other downstream 544292 82172469 ~ 82174852 (-) True G1496390
TU1712523 other upstream 876118 83605243 ~ 83605753 (-) True G1498077
TU1712995 other upstream 1253216 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 1321885 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 2492000 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 2557531 85286656 ~ 85288117 (-) False G1499684

Expression Profile