RNA id: XM_036950769.1


Basic Information

Item Value
RNA id XM_036950769.1
length 5332
RNA type mRNA
GC content 0.49
exon number 29
gene id LOC110493276
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82770283 ~ 82800894 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cAAGCAGTGCCAGTTTGTCAGCATTTTGTTCTGTTGTCTGCCTCCATTCATGTGCGGCATATGCTTTTACTAGCAGAAGATGACTGGGCGCCCCAGGGTCAAGTGGCTATTAAAAGAAGATCCAGAGTCCCTGGAGTTATGATAACACAGTTTGTGGAAGAAGTACCAGAGGGCATGTCCACCCCCGACTTCACCCGCAAGCCCATCGCTTTGACGATCCAAGAGGGTAAATTAGCCTTTTTCAAAAGTATGGTAAGTGGAGTGCCTAAACCAAACATCACCTGGGCCAGGAACAAAGGCCCGCTGGATGATCCAGTGAAGTATATCAGCAGATATGATGAGACTATGGAAGAATATTTTCTTGAGATACCCAATGTAAGAGCAGAACAAGCTGACACCTACAAATGTTTTGCCGCCAATGAATATGGAAGAGCAGTTTGCACTGCCACCTTGAATGTTATTGAGGTTGGATTCAAGAAGAAAGCGACAACAGGTCCAAAAAGAGCGGCACCAGAGGATTTCAGAAAAATGCTTAAGAGGAAGGTTGTACGAACTaaaccacaactaaagaagaaggagggagagattgaTCCAAAGTTCTGGGAGGTGTTGCTGAGCTCACCTAAGAAGGACTacgagaaggtctgtatggagtaTGGAGTCAGTGACTTCCGCTGGATGCTGAAGCAGCTGAACttaaagaagaaagagagagaggaggaacaggcaAAGGTTGTTGAAAAACTTGAAAATCTTAAACATATTGAGGTGAAAACAGATGGCTCAGCAGAGTTTGAACTGGACATGGAACTGAAGAATCCCAACAGTCAGGTTTTCCTATTCAAGGATGGGGTAATGGTTCCCTATTCTGACGACGGCAGCGGGAAGCACAACCTAAACAAAATTGGCAAAAAGTATATCTTTAGCATCAATGACCTGATGCCAGACGACGCTGGGTTGTACCAGGTGGACGTTGAGGATGCCAATTGTTTCTCAACTGACTTTAAGATTATACCAGTGAAGTTTGTTGTCAAGATTCAGGAGGTGAAGgctaaggagagagaggatgccaTGTTTGAGTGTGTCTTGTCCCACCCCTTCCAAAAGATTGTGTGGACTGGAAAGAACATCCCTCTCGAACAAGGAGACAAGTTTGACATTACTGTGTCAGACGACCACCTCATTCACAGCTTAAAAGTGAAAGATTGTGCCCAAGTCGACAAAGGAGTCTACACTGCCATGGCTGGCATTACCTCCTGCAACGCTTGGCTTATTGTGGAAGCCGATAATGACCCAAACATGCGTGGGGGAAAAGCGTCCCGTAAAACCACCACggctggtggtggaggagagaaccTGGCTAAGATAGCCGCAGAGCAGTCAGCTAAGCTGCAGAAGGAAAAGGATGACCTGGATGCAGCAAGACGGGCCCAAGCAGAGAAGGATGCTGCGGATGCAGCCAGACGGGCCCAAGCAGAGATGGACCCTGCGGATGCAGCCAGACGGGCCCAAGCAGAGAAGGATGCTGCGGAGGCAGCCAGACGGGCCCAAGCAGAGAAGGATGCTGCGGATGCAGCCAGACGGGCCCAAGCAGAGAAGGATGCTGCGGATGCAGCCAGACGGGCCCAAGCAGAGAAGGATGCTGCGGATGCAGCCAGACGGGCCCAAGCAGAGATGGACCCTGCGGATGCAGCCAGACGGGCCCAAGCAGAGAAGGACGCTGCGGATGCAGCCAGACGGGCCCAAGCAGAGAAGGATGCTGCGGATGCAGCCAGACGGGCCCAAGCAGAGCAGGACGCTGCGGATGCAGCCAGACGGGCCCAAGCAGAGAAGGATGCTGCGGATGCAGCAGGAGCCGGAGCAGGTGccggagagggggatggagaaggaCATGGAGGTAAAGGTGTTCAATTCCTTAATGGACTGGCTGATATTACTGGCAGCCTGGGGGAAACAGCAGAACTGTCCTGCAAACTGAGCCATGAGAACTGTGAGGGAGTCTGGCTTAAAGACGGGAAACTACTAACCGATGAGGATGGGCTGAAAATCATCCAAGATGGAGCCAGTCACAAGCTGGTAATTGAAAGCTGTAAAAAAGACGATGCAGGAGTCTATTCATTTGAGGTGGATGGTCATAAATCTGAGGCAAAGTTCACTGTTTCAGatCCAGGTGCTCAATTTGTTGGATGCGGACTCTCTGATATTGAAGTTAAATTTGATGAAACAGCAGAGCTGTCCTTGACACTAAGCAGTCCGACTGTTGAGGGGTTCTGGTATAAAGACGGGAAAGAGGTACCTCGTGGTGACAGGGTGAAAATCATCAAAGAAGGAGCTAGTCACAAGCTGGTCATTGATAACTGTAAAAAAGACGATGCAGGAATCTACCACTTTGAGGTGGATGGTCGTAAATCCAAGGCAACGCTCACTGTGCAGGGTGCTCAATTCAGCATTGGACTGTCTGATGTCGACGTTAAGCTTGACGCAACAGCAGAGCTACTCTGTGAAGTGAGCAGTCTAAACATTGAGGGGGTCTGGTATAAACATGGAAAACAGGTAACTCCTGATGACAGGGTGAAAATCATCACAGATGGAGCCTGTCACAAGCTTGTCATTGATTGCTGTCGAAAAGATGATGGAGCAGTCTATCGCTTTGAGGTCGATGGTCGTATATCAGAGGCCACACTCACTGTTCAGCCTGTTCAATTCATTTTGGGAGTGGCTGATGTCCAAGTTCAAATCTGCACACCAGCAGAGCTGTCCTGCAAACTGAGCAGTCCAAACTGTAAGGGGATCTGGTATAAAGACGGATTTCAGGTACCTCCTGATGACAGGGTGAAAATCATCAAAGAAGGAGCCTGTCACAAGTTGGTCATTGATAACTGTAAAAACGACGATTCAGGAGTCTATCTCTTTGAGGTTGATGGTCGTATATCTGAGGGATCACTCACTGTGCAGAACCCGCCAACATTCAACATGGATTCTCTGAGAGAATTCTCTAAGCCGGTCATTGTGAGAGCATGTGAAACGGCTGAGTGGAAATTGGCCTTTTCGGGTGGTGACCCAATGAAGATCAAGTGGATCAAGGAGGATGAGGAACTCCTGGAAGGCCTCAATGTCAAGATAGAACAGACTGACATAAAAGCCGGCTTGTGTATTACCGATTGTCAAAGGAGGAACTGTGGAGAGGTCAAAATCAATATAAAAAATGACTATGGTACATTGGAAGCCACATCCAGACTGATTGTTCTTGACAAACCCACACCTCCACAAAGACCTGTGGAAATTGTGGAAGCTTCTCTAACCGccattgaattcaaatggaaacCCCCAAAGGATGACGGTGGCTGTCCAGTCAAACACTACATTTTGGAGCGCCAGCAGGTGGGGGGAAGCAAGACATGGACAAATGTAGGGGAGCTCCCAAATGACCCCCTTAAATACAGGGATACTAATGTAAAGCCTGGGAAAAGATACTGTTACCACATCAGAGCCAAGAATGAGGAGGGAGTCAGTGATGCGTTTGAGACAGAGGACATCCAGGCTGGCATATTGTGTTACCCAGGACCCCCTTCGGCACCCAAAGTGGTCAGTGCCTTCAAGGACTGCATCAACCTGGTTTGGTCTACCCCTACCAACACTGGAGGAACTGAAATTTGGGGTTACAACCTTGAGAGACGCAAGAAGGGAAGCAACCTTTGGAGCCCTGCAAACCTAGACGGGCCTATCAAAGACACAACGTTTGCATTGAAAGATGTTATTGAGGGAGCTGCTTATGAATTTCGAGTGTCAGCTATTAACATCTCTGGTGTCGGCGAGCCCAGTCCTCCCTCTGTTATAGTCTTTGCCAGAGATCCCAAGAAACCCCCTGGTAAAGTCATAGACCTAAAGCTAACAGATTCCAGTTACACCACATTTTCTCTGGCTTGGACTAAACCAAAGGAGGTGGAAGGGGTGGAGGATGAGGCCAAAGGCTACTTTGTGGAGATCAGACCAAATGAGAGCCCAGAGTGGACTCGCTGTAACATCAACCCCATCATCTCCACCTCCTTCAATGTGATTGGCCTGAAGGCAATGGGAATGTACTGGGTGAGAGTGATCGCCACAAACGATGGAGGCGAGGGCGAGCCCCAAGGCTTTGATAATTACATCATCGCCATGCCTCCTCCTGTGAGGCCAAAATTTACAGGAAAAATGAAGAGCTTCATGGTTGTGAGAAAGGGGAATACTGTACGGTTCAACATAAACTTTGAGGCCTCTCCTTTGCCAGATATCTATTGGCTGAAGGACTGCGTGCCTGTGTCCAAACGTGTCACCATCACCAACTCTGACAGAGGTTCACAGCTTCTGATCCCCACGTCAGAGCGCTCTGATACGGGCATCTTTACCATCATTGTCAAGAACATGGTCGGTCAGGAGACCTTCAGTGTCGAGATCAGAGTCACAGATGATCCCAAGCCTCCTGGCCCGGTGGAGTTGGAACAGAATGTTCCTGGAACAGTGACTGTGACCTGGACTCCCTCCCCAGATGAGAAGAAGGATGACAGGCTGCACTACATTGTGTACAAACGTGACTCTGTCAAGCGCACCTGGAGGATGGTCGCTGACAGCCTCTTCAACCATAAGTTCACAGTTATCAACATTCTACCCGGCAGAGAGTATAACTTCAGAGTGTTTGCTAAGAATGACATGGGCCTCTCAGAACCTGCTGTGTCCCCTACATGGAGAACCACAAGGAGAAAAGATAAGTTCATATTGGACATGCCAGACGTAAAGGGCTTGGACCTTCAGTGTCCACCATCGTTTTTACTCCGATTGAAAATCCGCACCGCTCCACCAGGCTACGAGTGCTACATGAGCTGTGCTGTACGAGGGGATCCAAAACCCCATGTCACATGGTACCACAACAACGTCAGcctcaacaccaacaccaactaCCTTATCACCAACGTGTGTGGGGTCTGCACAATGCTCATATTGAAGATCGGACCCAAGGACAGTGGTGACTACAGTGTCATCGCAGACAGTCCCTTGGGCAGGGCAGAGTGCTCCACCAAGCTCACAGTCAGAGAGTGAAGAGTTCACCCAGATGATTGATTGGCAGCAGCTGGCAACACAAACTTATGTATTGACCTATCATAGTCTTCAAataggtgttgtgtgtgtgtgtgtgtgtggtggctcAGATGCCCTTTTTCTTTAGTCAAAATGGTACACTCTTAGAATTCTATGTGCTCACATGCAATGTGTCCTTCTATTTATTCTAGTTGTTAAAACATTGCAAAGCATGAAATGAACATgacaagacaaacacatatcACTAACTTTTGCGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1711377 lncRNA downstream 4108 82763830 ~ 82766175 (-) False G1497072
TU1711378 lncRNA downstream 4108 82763830 ~ 82766175 (-) True G1497072
TU1711212 lncRNA downstream 108645 82629246 ~ 82661638 (-) False G1496921
TU1711120 lncRNA downstream 244501 82525497 ~ 82525782 (-) True G1496844
TU1711114 lncRNA downstream 251166 82518798 ~ 82519117 (-) True G1496838
TU1711951 lncRNA upstream 69173 82870067 ~ 82870400 (-) True G1497552
TU1712001 lncRNA upstream 154616 82955510 ~ 82956802 (-) True LOC110494726
TU1712044 lncRNA upstream 217010 83017904 ~ 83018198 (-) True G1497642
TU1712049 lncRNA upstream 227632 83028526 ~ 83028761 (-) True G1497647
TU1712051 lncRNA upstream 230592 83031486 ~ 83031919 (-) True G1497649
XM_021570024.2 mRNA downstream 20625 82732958 ~ 82749658 (-) True zgc:66479
XM_021570023.2 mRNA downstream 41144 82719308 ~ 82729139 (-) True LOC110494720
XM_021570022.2 mRNA downstream 41158 82719144 ~ 82729125 (-) False LOC110494720
NM_001124574.1 mRNA downstream 314430 82449709 ~ 82455853 (-) True csrp1
XM_021570016.2 mRNA downstream 326410 82430022 ~ 82443873 (-) True LOC110494717
XR_005036712.1 mRNA upstream 1765 82802659 ~ 82808001 (-) True LOC118940110
XM_021570025.2 mRNA upstream 18927 82819821 ~ 82849981 (-) False igfn1.4
XM_021570026.2 mRNA upstream 18927 82819821 ~ 82849981 (-) False igfn1.4
XM_021570028.2 mRNA upstream 18927 82819821 ~ 82849981 (-) False igfn1.4
XM_021570029.2 mRNA upstream 18927 82819821 ~ 82849981 (-) False igfn1.4
TU1711213 other downstream 108645 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 524296 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 530019 82235128 ~ 82240264 (-) False G1496689
TU1710622 other downstream 595431 82172469 ~ 82174852 (-) False G1496390
TU1712523 other upstream 804349 83605243 ~ 83605753 (-) True G1498077
TU1712995 other upstream 1181447 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 1250116 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 2420231 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 2485762 85286656 ~ 85288117 (-) False G1499684

Expression Profile