RNA id: XM_036950774.1


Basic Information

Item Value
RNA id XM_036950774.1
length 5944
RNA type mRNA
GC content 0.45
exon number 26
gene id igfn1.1
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82874237 ~ 82912029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTTTGATGTATCAAGAGAGCCTTCTGATCCAAAATATACCAAGATGAAGGTGATGAAGTCGAAAGTGACAGATAAATCTGCCGAAGGGCAGAAGGTGGAAGGTGCTGGGGGTGCTATGGAAAAGCCCCACCACAAAAAAGtcAAGAAATTCAGATCAAAAGTCCCCGGAGTTATGATCACGCAGTATGTGGAGGAAATACCAGAGGGGAAAAGCCACCCTGACTTCACACGCAAGCCCATCGCATTAACTATTCAGGAGGGCAAGTTCGGGGTGTTCAAAGCCATTGTGTATGGTGAACCTACACCCAACGTGACATGGAACCGAGCAAATGGAAAGATAGACGATCCAGCGAAGTTCCAGAGCAAGTATGACGAGGCGTCTGGTGAACACACCCTAGAGATCCCCAAAGTATGTGCAGAAGATGCCGACACCTACAAATGCTTTGCAACAAATGAGTATGGAAAGGCTGTTTGCACTATCCAGCTGAATGTCATTGAAGTTGGATTCAAAAAGACGAAGGAATTAGCCAAGTCCAAAGAAGAACAAGAAGCAGTCAAACCTGGGTCTTTTAGAACAATGTTGAAGAAGCGcagGGGAGATGCCCATGAGCAAAAGCCACTCGAATCTGAAGAGAAAGTTTGGGAGATCCTGATGAGTGCCGACAAGAAAGATTATGAACAAATCTGTGCTGAGTACGGCATCACTAATTTTCGTGGGATGCTGACAAAACTGGCTGAaatgaaaaaggagagagaggttgaacaggcacAGTTTATTGAACATATCAGTTCGCTCAAACACATCGAAGTCAATGCTGATGAAAATGCAACGTTTGAAATTGACATGGATCTTAAAGATGCCAGCAGCAGAATTTTCCTCTACAAGGATGGTGTTATGGTTCCTTACACCGTTGAGATGGAAGAAGAAATGAAGCACCAACTGAAACGAGTTGGCAAAAAATTCATTTTCACGATCAAAAATCTAGACCCGGAAGATGCTGGTCTCTATTCAGTGGATGTAGAGGGAGTTAATATCTTCTCTACGGATTTCAAAATTCCACCTGTAAATTTTGCGGTCAAAATTCAGGAGGTGAAGGCAGAAGAAAGACAAGATGCCATCTTTCAGTGTGTCTTAACGGCACCTATGGCTGAGATTAATTGGATGGGCAAGAGTGCCCCGATAGAAAATGATGACAAATTTGAAATCACAGTGTCTGAAGACAAGCTCATCCACAAGTTGTTAGTGAAGGATTGTCAGCCTTTGGACGCTGGTATCTACGCAGCTGTGGCAGGTATCCATTCCTGCAATGCCTGGCTTGTGGTGGAAGTTGACAAGAACCCTGCGAACAAAGGCAAGAAGATAGCTCGCAAAACAACCCAGGCTGGAGGAGGTGATTTGGATCTGGAGAAAATAGCAAAGGAGCAGGCGGAAAAACACAAGAAAGACATGGAAGAGAGGTTGGCGGAAGCAAAGATAAAGGCTGCCGAGAGAGGCGTCACTGACGCAGCCACCCAGGCTGAGAAAGAGGCCGCTGATGCAGCCTCCAAAGCCGCCAGAGAGGCAGCAAGGGCTGCGGAAGCTAAGGCTAAGGCTAAGGCAGAGAAAAAAGCTGCTAAATTAAAAGATGCTAAGGAGAAAGCAAAGGCAAAGAAGAAGGCCTCAGGTGGTGGATCTGCAGGAGGTGGGGCTGCAGGTGCAGGAGCTGCAGGTGCTGCAGGTGCTGGTGCTGCAGGTGCTGGGGCTGCAGGTGTTGGATCTGCAGGTGTTGGGGCTGCAGGTGGTGGGGCTGCAGGTGTTGGGGCTGCAGGTGGTGGTGCTGCAGGTGGTGGTGCTGCAGGAGGTGGGGCTGCAGGTGGTGGAGCTGCAGGGGCTGAGGGAGATGCTGGATCTGGATCGGACTACGATGACATAGTAGTAAGCACAGATGAGTCTGATGAGGAAGATGGAGCCACAAAAACAAAGCGTGTGAGAAGCGGCCAAGTTGTTCCAGACACGTTCATAGATGATGATGAGGAAGCTTCAAGTGAGCAATCGGGGAAACGTGGGAAACGCACAAGGCAAGGCCCACTGCTCAAGGAAGAGATTGTTGGAAAGACAAATAGTAATGGCACAGCCAAAGATGCCAAAGTCCAAAAAAGAAAGGCAAAGAGCGGAGGTGGTGCTGCCGGGCAAGCAAGCGGTGGTGCGTCTGCCAACAATGGTGAGGCTGCAAGTGGCGATGAGGCTTCAAGTGCCGATGAGGCCAACGAGCCAGCAGAAGCTGCTAAGCGTGGCAAGCGCACAGGCCGCACAAGGCCAGGCCCAATTCTTCAGGAGACGGTCATTGACCCTGGCGTTCACTTCAACCTTGGGCTTTCTGACGTCACCGCCATAGTGGGAGGCCCGGCCGAACTTGTCTGTAAGCTGAGCAAGGAAAATGTCGATGGGGTATGGTACCTGAATGGAGAGGAGATTCAACCCGATGATGTTCTTACCATGTCTAAAGATGGATTCTTCCAATCCCTGAAAATCAGCAAAATCTCAGAGGACTATGCTGGAAAATACAAATTTGAGGCAGATGGGCGTAAAACAGAGGCCATGATTGTTGTTGAAGATCCACCTAGATTCGACACAGAGGAATTGAAAAAGTTTACTGTCCCAATCATTACTAAAAAAGGTCAAAAAGCCACTTTCAAGATACCATTTGTGGGTCGGGATCCAATGAAGATCCAATGGTACCATGACGGCGAGGAGCTATCAGACGACACAAACATCAAGATAGAGCACGGAGAGGGTTATAGTCAACTAACTCTTAACAAGTTACAGCGCAAAGACACTGGAGAAATCAAGTTCAAACTCAAAAATGAGTTTGGAACTGTTGAGGCCTTTGCGAAGATCATTGTAACTGACAAGCCCACCCCTCCCTTGGGACCTCTGGAGATTATTGAAGCCTCTCAAAATGCCATTGAGGTGAAGTGGAGGTCCCCAAAGGATGATGGTGGCTGTAAGATACTAAACTACATCCTGGAACGTCAACAGATAGGCCGCAACACCTGGAAGAAGCTGGGTCCGATCGGTCCAGAGGCCCACTACAAGGACAGTGATGTGGACCATGGCAGGAGGTACTGTTACAAAATCAGGGCCGACACTGAGATGGGCAGCAGTGAGTTGATGGAGACAGAGGATGTCCAGGCTGGCACAAAAGCATACGCTGGACCCCCTTCTGCACCCAAAGTGGTCAGTGCCTTCAAGGACTGTATCACTCTGACATGGAATCCCCCTTCCAACACTGGAGGAACCAACATTCTGGGATATAACATGGAGAAACGCAAGAAGGGAAGCAATCTTTGGAGCCCTGTCAATCCTGCAGATGATAAGATTAAAGAGAAGGAGTTTGGTGTGAAGGACGTGATAGAGGGTATGGAATACGAATTCCGTGTGGCAGCTATCAACAACTCTGGAGCTGGTGAATTTGGCACTCCGTCTGAGTTTGTGTTTGCCAGGGATCCAAAAAAGCCCCCCGGTAAAGTCATTGACCTGAAGGTGACAGACTCCACCTACACCACCTTGTCCCTGGGTTGGACTAAACCAAGGGAGAAAGCGGGGGTTGAGGATGAAGCCAAGGGATTCTTCGTGGAGATTAGACCAGCAGAAAGTCCAGAGTGGGACCGCTGTAACAATAACCCCATCAACATGACCTCCTTCACAGTGAAAGGCATGAAGTCAATGGCAATGTACTGGGTGAGAGTGATCGCCACCAATGACGGGGGAGAAGGCAAGCCGCAAGAGCTGGACAACTACATCCTGGCTATGCCTCCCCCTGTCAGGCCTAGATTCACTGATCAAAAAGTCAAGAGTTTCATGGTGGTACAAGCAGGGAATTCTGCACGATTCAACATGAACTTTGAGGCCTCCCCTTGGCCAGATGTTACCTGGATGAAGGATGGCATGCCTGTGTCCAAACGGGTTACCATCAGTAATGCTGAAGGGGCATCCCAACTTTTGATTCCTTCTTCAGAGCGCTCAGATACAGGAATCTATACCATTATGGTCAAGAATATCGTTGGCCAGGAGACATTCAGCATTGAGATCAGAGTTACAGACGAGCCCAAACCTCCAGGTCCTGTGGAGGTAGATGAGAACGTACCGGGCACAGTTACCATCTCCTGGTCACCATCTCCCGATGAGAAGAGGGATGACAGGCTGCACTACCTGGTGTCGAAACGTGACTCAAGCAAGAGAACGTGgcacacagtggcagaccacatctTTAACAACAAGTTCACAGCCTGTAACATCATGCCTGGCAGAGAGTACCAGTTTCGTGTCTATGCCAAGAATGACATGGGCTCTTCTCAACCCTCAGAATCACCAAAGTGGGAAATCACAAGCAAAAAAGAAAGGTTTGTGCTGGACAGGCCAGAGACTAAGACCTGCAACCTAGAGCGTCCTCCCAAGTTCCTTGTCCCGTTGAAAATGCACACCGCACCACAAGGTTATGAGTGCTACATGAGCTGTGCTGTCAGAGGGGACCCAACACCCCATGTCACATGGTACCGTAATAATATCAGcctcaacaccaacaccaactaCCTAATCTCCAACACCTGTGGGGTCTGCTCCATGCTCATACTGAGGGTTGGACCCAAGGACACTGGAGAGTACAAAATCATCGCAGAGAACCACCTGGGCAGGGCAGAGTGTTCCACTAAGCTCACTGTCTCAGATTAGATTGCCATTAAAAAGAAGACAATCATGCCCTTATTTTTTTTCAAATAGCCAAAAGGAAAACTTCATCCAAAAACGATATGttagtatttgtttcattagcccattgttgacatagtcccataTTATTTTGCTTATAAACAATCAGGTTTTCAAGATAttcaactttcaaaatacagatatCATCCTCCGTATGATTAATTTTGTATCATATGATGCTGCTTTTTGTATCtcatgatgcaaaatgcatcatacagggttgatttctgtattttgaatgtgACATATCTTGAAAATTTGATTGCTGACAACCAAAATAGTTtaggactatgtcaacaatgggcgaatgaaacaaatacaaaaacatagttttggggtggaattttcctttCACAGAAGTCCTCTGTTGTTTTCCACTTCTGTGTAGAAATGACATTTGTATATTTTAAGTTCAGTGTTCCCTGTATCACATTTTACATAAGACTATTCTACATTCTGGGTGCTGCATATGTTTGAAGATCTCAGGTTGAGTACAATACAATGCATCACTCTTTGAATTAAGGCGAGACCATTATGTAACGTAACAACAGTGTTCAATAATCAAAGCAGCCTAAAAGCAAGTCAtgaatagtgttgtgtttgtgtttttgtttttttctcaaaGTGAAATATTGGTATAGGAAAGATGATTGGAAATTGAAATGATGCATGTTGCTCTTGTTTTCAGTGGCTTTTGAGTAAATTTGATTTAGAAAATGAACAGTAAaaacaagcagagagagagagatcaaggttTACTGGCGCAAACATTCAAATGAGAACTGCAAATGCGTGGCTGTGTTTCATTAACTTCAAAGGTAATTACTCATTTGTGAAATGTGTTTTGCTGTGAAATGTGAAATGTGTAATGCTGAATTGCCCATTTTTTTCTTTGAAAACTAGAATAAAtatttgttgtctatagtgtttgtttttgtctttaaTGATTAaactaaatgtaaaatgtttaatATAATAGAACTTAATCAATCTACTATCTTCAACTAATCACAATGTAGAAGTAAAACATACAATGGATCTGAATGGTGTGTTGTAAAAGAGATATTTTTATGTTGGCTACGCTATTTACAAGAGCTTGGTGTAAATACATATTTCAAGCTCATATGATGTAGGAAGTTTGAATTCGAAATGTTTGAACAGGAGAGTCAATTAAAATCAGTGATTATTCGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1711951 lncRNA downstream 3837 82870067 ~ 82870400 (-) True G1497552
TU1711403 lncRNA downstream 83922 82790091 ~ 82790315 (-) True G1497090
TU1711377 lncRNA downstream 108062 82763830 ~ 82766175 (-) False G1497072
TU1711378 lncRNA downstream 108062 82763830 ~ 82766175 (-) True G1497072
TU1711212 lncRNA downstream 212599 82629246 ~ 82661638 (-) False G1496921
TU1712001 lncRNA upstream 43481 82955510 ~ 82956802 (-) True LOC110494726
TU1712044 lncRNA upstream 105875 83017904 ~ 83018198 (-) True G1497642
TU1712049 lncRNA upstream 116497 83028526 ~ 83028761 (-) True G1497647
TU1712051 lncRNA upstream 119457 83031486 ~ 83031919 (-) True G1497649
TU1712124 lncRNA upstream 209834 83121863 ~ 83122091 (-) True G1497722
XM_036950778.1 mRNA downstream 299 82855725 ~ 82873938 (-) True LOC110494724
XM_036950770.1 mRNA downstream 24256 82819821 ~ 82849981 (-) False igfn1.4
XM_021570042.2 mRNA upstream 43517 82955546 ~ 83235227 (-) False LOC110494726
XM_021567430.2 mRNA upstream 352507 83264536 ~ 83267901 (-) False rs10
NM_001160622.2 mRNA upstream 352508 83264537 ~ 83267635 (-) True rs10
XM_021570047.2 mRNA upstream 411476 83323505 ~ 83343851 (-) True LOC110494728
XM_021570048.2 mRNA upstream 455215 83367244 ~ 83376606 (-) True LOC110494729
TU1711213 other downstream 212599 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 628250 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 633973 82235128 ~ 82240264 (-) False G1496689
TU1710622 other downstream 699385 82172469 ~ 82174852 (-) False G1496390
TU1712523 other upstream 693214 83605243 ~ 83605753 (-) True G1498077
TU1712995 other upstream 1070312 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 1138981 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 2309096 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 2374627 85286656 ~ 85288117 (-) False G1499684

Expression Profile