RNA id: XM_021570042.2


Basic Information

Item Value
RNA id XM_021570042.2
length 6804
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110494726
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82955510 ~ 83235227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAATTGTGTCTCACGTGTTTATTGTAAATCTTCTTGAGCGTGAAGATGAGCTATGTCTGCTACACACTTTTGAGCAGACTAATCATAACATATTCTTATACATATTCAATGTTTATAGGATTAAGGTATAACTCCAAAACAAGTAAACTCAGTGGACTTCAAGTCTGAAATGAAATTAAACTTAATGTAGCAGGTGGTCGAATCGACATAGCCTAAATCAAAAAGAATACGAGCACGATTTAATAAGTGCATGGCGCACTCTTTCTTGGCATGTGGTGTAACTGCCTTCTGGTAATTGTGAAATATTTGCGCTTTCTATCCGGTTCTCAGCAGAGGCATTGATACCAATCCCTTTACCAAAATGAAATGTGCATTTTGCTGCGTTGCATTATGATCAAATGAATTCAGTGGGCGCTGAGTGCACTCCATCGATTGGACATTGCTGTCTCCATTCCGCGGGCATGCGAGGTTTGCTTTTCAGTCATCTTCATTATCAGGAAATGTCAATATATGTTGTTTAAACACATTAAGTGACTGTTGTATAAAGGCTACTTTACGTCATCGGTCAATTTGACTTATCTGTAATCAGCAGCAGGCAACTAAAGTTAGGCGAGTCAAGACTTTCCACTGGACAGCGCTCCAGCGGCTTTGGGATCGAGACAGCCTACTCAAACGCATGGATTTCTTTGGGATATTTCAAACGATGGATGGAGCTCTTTGGAAGTAAGGTCGATGACATTCTTCAAGTAATCTACACAATATTACAAACAGGAACGACATTTTTCTTGATTCTTACATTGACACGTTTGTGCATTGGATATGGGTCAGTTCACACCGAGAAGATTCTGCCAGAGCAGACCCGGTAAAGGGGAATTCACTCAGCAACCCGGAGAATTGAGCCGAGTGGCCTGAAGGCTCTGACACGAATCAACTAACCCCCCCACCACCaagggaaggggagagattaAAAACTCCTGATCGAcgtggagggagagagtaagagaaggagggagagagagagagagggggaaaaagagCTTATCATACACCTTTGCTCTTCTTAATGCCCCCTGTGAGGGATCGCCATAGGCAGGGTGGTGAGTAACAGCGGGCAGAGGAGTAGCTGCCCACCACACTAGTCAGACCATGGAGTGAGGAGAATAGAAGGAAATAAAAAGATAAGAAAAGAAGAGGATATATCCTTTGAAGAACCAAACTTAAAGCAAAGCAACGAGACACATCACCTCTTCTGTGCCCACCTCTTCGAAAAGTATTATTAAGATTAACCCCCATGACATGAAGTAGTGTTCTCTGTGTTCCTGATTCCGCTGGGTTCTAGAGTGTGTCAGTATTCGTGTCTGGGCTGTGGTCATGGTGTCTCAGCTCCAGGGGTGTGCTTTGCATCGGACAGACAGGATCTGTCACAGAGGCAGCCTGATCAGGCTCTTACttctactctactgctctctcaTGACCGCCCAGGCTGCCAAACCCAAAGGCCCGGGTGGCACACACCTCAACTCCATCCGCATCGACGGAGACATCTCCCTGGGAGGCCTGTTCCCTGTGCACGCCAGGGGCAACGAAGGCAAGGCCTGTGGGGAGCTGAAGAAGGAGAAGGGGATCCATCGTCTGGAGGCCATGCTGTTCGCCCTAGACCGTATCAACAACGACCATTCCCTGCTGCCCAACATCACGCTGGGAGCACGCATTCTAGACACGTGTTCCCGGGACACCCACGCCCTGGAGCAGTCACTTACCTTCGTCCAGGCCCTCATCGAGAAGGATGGGACGGACGTCAAGTGTCTTGGCGGGGGAGCACCCATCATCACCAAGCCTGAGAGGGTAGTGGGAGTCATTGGAGCATCGTCCAGCTCTGTGTCCATCATGGTGGCCAACATACTGCGGCTCTTCAAGatCCCCCAGGTGAGTTACGCCTCCACGGCCCCGGAGCTGAGCGACAACACACGTTATGACTTCTTCTCGCGCGTGGTGCCCCCAGACACCTACCAGGCCCAGGCCATGGTGGACATCGTCAAGGCCATGCGCTGGAACTACGTCTCCACTGTGGCGTCAGAGGGCAACTACGGAGAGAGCGGGGTGGATGCCTTCATACAGAAGTCTCGAGAGGATGGAGGTGTGTGCATCTCTCAGTCAGTCAAGATTCCCCGGGAGCCGAAACAGGGAGAGTTTGATAAGGTCATTCGCAGACTAAGAGAAAACCCAAATGCAAGGGTGGTCATTATTTTCGCCAATGAGGATGATATCAGGCGGCTACTCCAAGCAGCCAAGAAGGCCAACCAGACTGGCCATTTCATCTGGGTGGGCTCAGACAGCTGGGGCTCAAAGATCTCTCCAGTGTTACACCAGGAGGAAATGGCAGAGGGAGCAGTCACCATCCTGCCCAAACGCCAGTCCATCAGAGGGTTTGATCGTTACTTCATCAGCCGCACACTGGAGAACAACAGGAGGAATATCTGGTTTGCTGAGTTCTGGGAGAACAACTTCGCCTGCAAGTTGAGCCGACACGCTTTGAAGAAAGGGTCCGGGCTGAAGAAATGTACAAATCAGGAGCGGATAGGGAAGGACTCCAACTATGAGCAAGAGGGGAAGGTGCAGTTTGTTATCGATGCAGTCTATTCCATGGCCCATGCGCTGCACAACATGCACAGGGAACTCTGTCCGGGGAAGGTGGGCCTTTGCTCCAGGATGGATCCCATCAATGGCACTCTACTGCTCAAACACATCCGCATGCTCAACTTCGCAGGAATAGCTGGCAACCCAGTGCTCTTCAATGAGAATGGAGACGCCCCTGGTCGCTATGAGATTTATCAGTACCAGATCAGAAACAGAACAGCTGAGTACAAAATCATCGGTCACTGGACCGAACAGCTCTCTCTGACCATCCGAGCAATGCACTGGCCAGGTGGAGGTCGTCAGATCCCTTACTCCATCTGCAGCCACCCCTGCCAGGCCGGAGAGCGCAAGAAGATAGTGAAGGGCATCCCTTGCTGCTGGCACTGTGAGCGCTGCAACGGCTACCAGTACCAGTCAGACACCTACAGCTGCAAGATGTGTCGCTTTGACCTGCGTCCCAACGAGAACCACACTGCCTGCCGTCCCATCCCCATTGTCAAGCTGGAGTGGAGCTCCCCATGGGCCATCATCCCTGTCCTCATCTCCGTAGCGGGCATTATGGCCACTCTGTTCGTGGTGGTCACATTCATCCGCTACAACGACACACCCATCGTCAAGGCGTCAGGCCGCGAGCTCAGCTACGTTCTGCTGACTGGTATCTTCATGTGCTATGCCACCACCTTCCTCATGATTTCTGCCCCTGATGTTGGCATCTGCTCCCTCAGACGGATCTTCCTGGGTCTGGGGATGAGTATCAGCTACGCAGCCCTGCTCACCAAGACTAACCGCATCTACCGCATCTTCGAGCAGGGATCCATGTCGGTGAGCGCCCCCAGGTTCATCTCCCCAGCCTCCCAGCTGGTCATCACCTTCAGCCTGACGTTGGTGCAGCTACTGGGGGTGTGTATCTGGTTTGGGGTAGACCCGTCTCAGGCCATCATCGACTACGAGGACCAGCGCACGGCCAATCCGGACATGGCCCGTGGCGTGCTCAAATGTGACATCTCTGACCTTTCACTGATCTGCCTGCTGGGTTACAGCATGCTGCTCATGGTCACCTGCACGGTGTACGCCATCAAGACCCGGGGGGTGCCGGAGACCTTCAACGAGGCCAAGCCCATCGGCTTCACCATGTACACCACCTGTATAGTCTGGCTGGCCTTCATTCCCATCTTCTTTGGCACCTCCCAGTCCACAGAGAAGATGTACATCCAGACCACCACTCTGACCATCTCCGTGAGTCTGagtgcctctgtctctctggggatGCTCTACTTGCCCAAGGTCTACGTGATCCTCAGGCACCCGGAGCAGAACGTGCCCAAACGCACACGCAGCCTTAAGGCCATGgtcactgccaccaccatgtccaACAAGTTCAACCCCAAGGCCAGCCTACGTCCCAATGGAGAGGCCAAGACTGAGCTGTCTGAGAGCCTGGAAACACAAGcTTTCGCCACAAAGCAGACATACATCAGCTACAGCAACCATGTCATCTAGGAGAGGAAGGCCGTCGTCGTTGTTCTGGATGGTCACCTCATGGCGGGTGAAAATGTTCTTATGCACTGGAATTAAATGGGAAATAGAGGAAGAAAATGGACATGGGACATGTTGTGAGGATCACTAAAGGATTTCCCAGGGAATAGTCATAATAAAGGAAAGCGAGAAGACCAcacagagatgcagagagggacCCTCAAGGGCCCAACAGAACAGATACAGTATAATGGTGATGCTCCATCTTGTCGGCCATGACAGACAAGGCCAACACTTCCCCCCTGGCAGAGACCGGAGAGGATATGATGCGGGATGAGGCTTCTTCTCCCTTCTCGTTGTTTGCATTGCAGCTttattctctctatttctctctctctctctctctctctctctcttttttttcttatcTTATCTTGAGCCGACCGGACTGACATGCAATCCAATTGAAAGAATCTGTTCAGGTGTATGCCATGCAAGGTTGTAGTCTGCTAGTGTTCTCAACAATAAGGGACATTGCTCTCAATGCTACAGGAAGTTGCAGAGCCACCAGGATGAGATCAGTCTTTTATTTCAAGGAGGATTTTAAGTGACATAattgatttttgttgtttttttaaaggtattCCAGTTTAAATACTGGATTCAAGAAACCATTCCAACAATGCAGGATAATTGTACGCCAtcatatttttgttgtttttgcctTACCTGTCTTCATTGAGTTGACCCAAAAAATTATAATGATGTTGACAAAAAAATAATATGGTCATTACTGATTTTGAGCATGCCAGTTTGAacatcctgtgttgtgttgtaaaaaaaatattggaaTGCGTTCAAACTCTGTTGCAGTGTGGTTTCTATTATATGTAAATTCCAAACTGGTGAAGGTCTAGTGAGTGATCTTTGTTTCTTTGTGTGAGGTGAGGCCCTGATCTGTGTTATTAACTAACCAAAGGCTACCACTGTCCTCTGCCCACTTTGCCCATACTTTAATACTGTAACTCCAGACTAAAACAAAGAGTCTCTCAGTACAAATAGAGATGTGTCATGGTGGACTGAACACAGAGGTGCAGAATGCCTCAAGATAAAAACGTAATATTCAAAATCTGTAAATTTGACTAAATATTAGCACTTCACTCCACATACTGTTCTCATGGGCAATAACCTTCAATCTGgataacaacacaaaacaaattgTAAGGCTAGAGAAATGTATCGACCAATTTCACCAATACAATCAACACCAAAACATGTCGGAGAGTAAGCATGGAGTACCAATCCCCAAAAGAATATTAGAATCCTTGATGGACACATACGATTTATGCTTTTCACCACTGGGAATGGTAAGTGTAGAAACCGACTTGCTAAAGTCGATAAACGATAAACTGGGCATACTTGAACTAGTCAGTAAAGATATAAAGCAATTGAAGGCGAGCCTCGAGATCAGTGACGAAAAAGCTGCGACAATGGAGAAAGAAACAAACAAGCTAAAAGGTACAGTCAAATACAATTGAAACGGACGTTAAAAAACTTTAAAAGGAGAACATGTTTCTGAGACCAGCCTTACTTGAAATACAGACTAGATCTATGAGAGCAAATCTGGTACTTACTGGTATCAAAGAAAAAGAGGGTGAAGATCCTGAAAGTGGGATGAAATAATGATGTCTTGAAGAGCTACAGATCCCAGGCGATACTGTTAACCAAATCAAACTCTAACGTGTACACCGTTTAGGACAGAGTGGACAGAGATATAAGCACCCAATCATTGCCAAATTTGCATTCTTCCGAAATAAAAGAAAAGTTAAAAGCCTAGGTGGAAGACTCACTGGCACGAAAATAGGCATGAATGATCAGTTCCCGAAGGAAATTGCAGAACGGCGTAGTTTATCTCGTTGTCGATAAACTGTATATTGATAACCAATTGTTCCGAGTCACCAAGACTACTCCATGGCATTTCTAAATACTACAAAGTTCCCATAAAGGAGTCCAATAACGGAACATCCAATACTAtccatggtagggattgtaatacatttttttggAAAACTAGTCTCTCAGGCTGCAAGAGGCCCTATAGTGAGATACCATCGATGACCCCCATCCATTTCCAGCAGCTATCCTACCGGTCACACAAAGGTACAGCTAAGTTGTACAGATCCAAATCCATTAAATGGGGAGTAAAGTATCCCCAGGGGAGTATGCCACACAGTAGTCGTGCACCCAGGATGATATCCATAATGGATAAAACAGTGGTTTTATGTGGTAAAACAGTAgactaattaataaaaaaatgaattatCTCTGAGGACTGTGTCCTGTTTTGCAAAATGCTTCAGCGATATACTAGTATACTATATGACCTCAAGCTACAGAAAGGAATCTACTCAAGACAAAATGCCAAAGGATCCAGTAGTCCATTCGGCCGCCATCAGTTCTCTGAATAAATACATCAGAAGTGGTTGCTGTAAAACTGAACAGTCCtttagtttattttattttatattgtgaGGTCATTTGTGATGTGAACTCAACGCTGCTTTTCCATTAACCTCTGTATtactaaaataataaaataacgtGAGTGCTGACCAAATGAAATGGCAAGTTAATGTACGTTATTAAATAGATTGATGATGTCCGCTTTTATGTCTTGACAAATCTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1711951 lncRNA downstream 85146 82870067 ~ 82870400 (-) True G1497552
TU1711403 lncRNA downstream 165231 82790091 ~ 82790315 (-) True G1497090
TU1711377 lncRNA downstream 189371 82763830 ~ 82766175 (-) False G1497072
TU1711378 lncRNA downstream 189371 82763830 ~ 82766175 (-) True G1497072
TU1711212 lncRNA downstream 293908 82629246 ~ 82661638 (-) False G1496921
TU1712225 lncRNA upstream 14217 83249444 ~ 83251469 (-) True G1497823
TU1712260 lncRNA upstream 70740 83305967 ~ 83311342 (-) True G1497852
TU1712281 lncRNA upstream 116076 83351303 ~ 83351591 (-) True G1497873
TU1712283 lncRNA upstream 122711 83357938 ~ 83358249 (-) True G1497875
TU1712289 lncRNA upstream 129659 83364886 ~ 83365246 (-) True G1497881
XM_036950774.1 mRNA downstream 43517 82874237 ~ 82912029 (-) False igfn1.1
XM_036950775.1 mRNA downstream 43517 82874237 ~ 82912029 (-) True igfn1.1
XM_021570034.2 mRNA downstream 50616 82874237 ~ 82904930 (-) False igfn1.1
XM_021570035.2 mRNA downstream 50616 82874237 ~ 82904930 (-) False igfn1.1
XM_021570036.2 mRNA downstream 50616 82874237 ~ 82904930 (-) False igfn1.1
XM_021567430.2 mRNA upstream 29309 83264536 ~ 83267901 (-) False rs10
NM_001160622.2 mRNA upstream 29310 83264537 ~ 83267635 (-) True rs10
XM_021570047.2 mRNA upstream 88278 83323505 ~ 83343851 (-) True LOC110494728
XM_021570048.2 mRNA upstream 132017 83367244 ~ 83376606 (-) True LOC110494729
XM_021570051.2 mRNA upstream 150439 83385666 ~ 83387331 (-) True LOC110494732
TU1711213 other downstream 293908 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 709559 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 715282 82235128 ~ 82240264 (-) False G1496689
TU1710622 other downstream 780694 82172469 ~ 82174852 (-) False G1496390
TU1712523 other upstream 370016 83605243 ~ 83605753 (-) True G1498077
TU1712995 other upstream 747114 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 815783 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 1985898 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 2051429 85286656 ~ 85288117 (-) False G1499684

Expression Profile