RNA id: XM_021567437.2


Basic Information

Item Value
RNA id XM_021567437.2
length 4880
RNA type mRNA
GC content 0.42
exon number 5
gene id nudt3
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83246730 ~ 83264337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCGCAATTGCGTCCTCCGCGAAACCAGCGTCATTTTCGTAAATTCTCTACTTAGTTTCGTTTTTTCGTAATTCGATGCCGTATTCCTCAAAATAAGATACGTACTATCCTAAAGCCAATTTCGTTCAAATGTGCCTTGTTACGTTGATTACGCAGTTATCTTCATAATGGCGACCGTGCTGGAGAAGCGCCTATGCTTGTGAAAATGAAGCGAATAAgttatttattttaataaaacGCCGGTGTTACCCATAGGAGGACGTTGCATCGAAGACAGCGGCTTTCCCAGTGTTTGAATTACAGTTTTGGTCCATTGGTAGCCCGAAATGATGAAGTTAAAGTCAAATCAAACCCGGACATACGATGGGGATGGCTACAAGAAGCGGGCCGCCTGTCTGTGCTTTAGGAGTGAAAGTGAAGAGGAGGTGAGGACGAGGATGCAGGGCTATAGGGTACTGTTGGTGAGTAGCAGTCGGCATCCAGACAAGTGGATCGTCCCTGGTGGAGGGATGGAGCCAGAAGAGGAGCCCAATGTAGCTGCAGCACGAGAAGTCTGTGAAGAGGCAGGTGTGAAGGGGACTTTAGGTCGTCTAGTTGGAATTTTTGAGAACCGAGAGAGGAAGCACAGAACCTACGTCTACATTCTTATCGTAACGGAGGTCCTGCAAGATTGGGAGGACTCTGTCAACATTGGGAGAAAAAGGGATTGGTTTAAAATAGACGATGCCATACAAGTGTTGCAGTGTCACAAGCCTGTGCAGGCCACCTACTTCGAGCCTCTCAAGGAAGGTTGCCTGACCAGCAACGGGACGCCCCTAGTGGCCACGATAGGCGGAGAACTCTCGCCCACCTACAACATCAACCAGAGCTCTGTGTCGGGTATCAGATAACTAAAACACAACGCTGACACAATCCCCAGGAGCTCTcgccaccactctctctcttacttctATTATTTTTTATCTCAAATACCAACATGGGTTGCCTTGCCAACTCTTTTGTGCCAGAGTTGTGGCGCAGACTTGACAGGTGTTGGCTGAAGATTCTGAAACACTTTGTAAATGTAATTTCTGaccctttttttgttgttgttgttattattgtattGAAAATTGCATGAAGCATCCCTCACTCCCACATTCTACTACCTTAACGCGCCCTTAGCGTGGTGTTTATTGAATGCAAGAACTACTTTTTACTGTTGTGATGTAAAAGTGTATACTTAGTGCTTAAGCTCAAGGCTTTCAGTGGTATTTTATGTCTTTTGGTTATTTTCTGTGAATGAATGTGGCAAAGAGTGTTTTCCCTCTTAAGTATAGGAAATTTGAGCTCGACCGTTGTTTTTTTGGGGGTCCGATTgatttattttgggggggggggtaaaatgtGCCGATATACAGTTTTACAGCCGGGAAGTGAGTCTTGTTTTTTCACCACACTGAATTCTCATAAATTACCATCCCAAGAGAGCAGTTGTCCAATAACTATGCTTCAAATGTTTTCATACATTGCGATAATGACCCATCATGAGAATGGCGGCAAGTGTTCAGATCAGCATGAGATTCCCATTTTTCATCTTATTTATTGAATATCGGTGGAACTTTCTTTCGATAGTGGTAGAAGGCCAATATCTGCCGACAATATCGGTGAACCGATATATCGGTCGGGCTCAATAGAAAATGTTCTCTGTCATCTGAATGGACAGATTGTGGGAAGTTACTTGTTTTGCGTGAGCACTGGTATGTTTTGTCTTACACATTGGGGTGACCTGACACTGATTGTGCAGCAGGGTAGTCTTCTGTGGTAACCAAGGTCTTTGAATTATCTTCATTTAGCTCGATTGTGGTTATTGGTGTTAATATTTTGCAGGTTTCATCAGAAAGACTAGGCCCTTTTCCACATGGATTTATGACCCGATTGTCAAGTTGTACATTTTCCCTTAGTCTGGAAGCTAGCCAGCCATTTCAATATTACATTAtgggcaaaaaaaatatatactatagAAAGGTCTACTCAACTAAAGATGTAGAACAAAGTCTCCTATAGAGAATGTATTTCTCCAGTGTCTATATCTATTTTAATGTTCCCCTAGTCTGTTGATAGTGGTTCACTAGACACTGAAACAGTTGGCAGATCCCCCTACCGACCGAAATGTATCCGTTTTTATCATTTGGAATTGCATGATGTGAACGACTGCAGTCTTCCTCCATTTATTTTCCAGAGGGTGAAAGGACTACTGACTGCAGTGCCATCCATGGACTGACTTACCTTCACCCAACACATAACTCTTAATCACATTTTCAGATTCTCCCGACTCACATTAACCTCAGTTTATAGCAGATGTTTACATTGTTCATAGCATTTATTTATCACACCAGACAGCTAGATGGGTATTTTAGATGACTTTTCAGTAAGGTCTTTTTTTTAGTATAGAATCTGCATCCCCGAAACAAACACATGATACCTACCTGCTTGACATTCAAAGTCATGGAATCTAAAATGCTGTCTTGGCAAGATGCAGAACAAACAAGCCTTGAACAGTTGGATACCTTGTTTTTAACATGTAAAAATGCTTTTGGATAGTTTTTTGCTCTCTCTTAAACGTCTGGCAAAAGTCTCTCTAGCCAACCTGCGATACTTGCCTTGGATGTGGCATGGAGCAGCTGGCTTAATACTGTGAAACTGGAGGCGCTGTAGATAGCATGTAAGCTGTTGTATTGTAAAttgtttatttctgtatagaaCAAAGGTGAGTGTACAAATGACAAAAACAGTTTCTCTGACGCATGTGTGAGTGCTATATGTTGCTCAACATGGCTGTAGAGTTGACTCGATCCCCAAACAGGCGGTGATGTTGGTTTTGGAGGTTTTGTTGACGAGTTACTTTGATACACAAGGGCTGGGGCTGAAAATAACTCAAATTATATAAGCAGCTGAGATGCCGCCTCAGATGTTCTATGAAGACCATGTGCAACTGAGGCCGAGGTAATAAAGTGAAGTTAATCACAGTTGAACGGTTAACATACAAAGGACTCAAACACATCCGCTTTAGCCGACATCTTCATAGCGGTTCTTTTGGTGGTGTGGAACtgcattagagctgtcaaatccactgGCAGCTCCTGGCATTTTACCTAAAGCGGACActgccattggctgcacggagtcACATTAAGAGAAACCCCATgtagccttgtttacaagttggaacactggaatgtgagagaTAATTTACACCTCGATTAATTAGGCTGATATAAATCCTTATTTTGTTTTCTGATTTTCAATTTGAGCATTATTTCTAAATAGTGTAGGCTCTTGTTCTAAGCTTCTAACGCAAATTGGACGGGTGTGGCATTGTGACTGATCAAGAGCTGCTGCACACTGATTTGACGGATCCAGCGCAATTGCACCTATGCAGGTGTCGGCTATTGCCGGGTAACTCTTAAATCTAATTTAGGCCGAAATGTAGATTCTCAGCTGATTACTGTTCCAAACCACTAGTCTACCAGACAGCACTGCGCTGTTATGACATTATCCTAGTCTCTGACAACCAACACTTACATGCCACTACATCTCCCCCGTCATCTCTTTTGCCCCATAATTGTTTCATTCGCTCTCCAAATGGAGCGTTATCTATGTTCTCCCCAATCCCAGACTCAATGATGTAGGCCTGTTCTCGAATTGGCAATGGATGTGAAATATCTTTAAGGGTGTAACTAAATTGAGTGGATGACATATCAATAGGAATGCTACAGGAATCCCTCTCACAGAGGCCTGGGACTTTGAACCTAGATTTATTGCTTTTTAAATGAGCTGCATCGAAATGTGTGGGGGCAAAGTCTTGGAACTGTCTAGTGAAGACCGGATCCTTTCCAATATCACCTGTCAAACCCAGAGCAGAATACATTTAGGCCTGTATTTCAATTCTGTGGTCAGCCTCCCTCAAAGTCCACCATTTTCTTTCAATAATCTAACAATTAGTTTAGAGCTGGAAAATCTGTGTGATTGACAAAGGGCTTCTACTAAAAATCGGTACAAGGGCAGGCAAgcgctgtaaaaaaaaaaaaaaatggatattCGTGTAACAGCCAATGAATGACTACTTGTTCTTTAACCGTTGTCAATTTTAATGTGTTCCTGACAAGATGTGTTGTCCCGCTTTAGCTAGTATGCATGTACGTCTTCTAGCTAGAGGCTCTCCGACACACTTTAGGCTTTAGTGAAGTGTATGGTTTCCCCTTTCCATATCACAATTAACTTTTATTTTAATGCAATGAAAGTTGAAGTGGACAGGGATTTATACATGCATTTCTCTTCTTAAGGGATGACTCTACACGGCACTGCTGTCAAAGCATGAAAAGCACAGTGAAAGCCTGGAGGATGAATGAAAGTAGGAAGGATGCATTTCTAAAAGGCTCATAGGCCATGGTCCTTCAACACAAGAGATACTGGAAATCACATGACCACTGGGAAACCATTAACACCAGCTAGTGGCCAGGCAGTATTCTGCAACAACCCACGTGAAAATGTTTTTTGCCTCAATGTTCAGTTCTACAGTGTTCATGGCATAGCATTTCATTGGCATAGTGGTTAACAGCTTGATCCTTTTTCAATTGGACCGTCCAGCAATTCGGGTAATACTCCCGCTAGGCAAAAATTGTGATTCATTGTAAAAAACTATTTGGACTACCCTAATATGTTTCCATTTCCCTCAACATGACCTCAGCCTTTTAGTTTCCCTACATATTCGTAGTAAAGGTGTACTTCTCTGGAATTTGATTTCTCATCATTTGGGACTGTGGAATAAATCAGTGGGCTGAAGATTGTAATATAAAAATgtgccaacaaataaaaacaccaGTATTTCAGATCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1711797 lncRNA upstream 10295 83236196 ~ 83236435 (+) True G1497440
TU1711708 lncRNA upstream 119640 83126831 ~ 83127090 (+) True G1497357
TU1711707 lncRNA upstream 122074 83124445 ~ 83124656 (+) True G1497356
TU1711702 lncRNA upstream 127544 83118975 ~ 83119186 (+) True G1497351
TU1711668 lncRNA upstream 171232 83070545 ~ 83075498 (+) True G1497320
TU1711759 lncRNA downstream 186 83264523 ~ 83267127 (+) False G1497405
TU1711762 lncRNA downstream 186 83264523 ~ 83267127 (+) False G1497405
TU1711761 lncRNA downstream 1220 83265557 ~ 83267127 (+) False G1497405
TU1711757 lncRNA downstream 1952 83266289 ~ 83267127 (+) True G1497405
TU1711814 lncRNA downstream 4316 83268653 ~ 83269149 (+) True G1497456
XM_021570018.2 mRNA upstream 529282 82668822 ~ 82717448 (+) False LOC110494719
XM_021570020.2 mRNA upstream 529282 82668822 ~ 82717448 (+) False LOC110494719
XM_021570019.2 mRNA upstream 529282 82698144 ~ 82717448 (+) True LOC110494719
XM_021570017.2 mRNA upstream 585086 82636385 ~ 82661644 (+) False LOC110494718
XM_036950768.1 mRNA upstream 585086 82638693 ~ 82661644 (+) True LOC110494718
XM_036950785.1 mRNA downstream 5310 83269647 ~ 83308391 (+) False LOC110494727
XM_036950779.1 mRNA downstream 5310 83269647 ~ 83311364 (+) False LOC110494727
XM_036950782.1 mRNA downstream 24341 83288678 ~ 83311364 (+) False LOC110494727
XM_036950783.1 mRNA downstream 25787 83290124 ~ 83311364 (+) False LOC110494727
XM_036950780.1 mRNA downstream 25788 83290125 ~ 83311364 (+) False LOC110494727
TU1710572 other upstream 1076980 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 1413629 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 1644573 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 1908567 81337017 ~ 81338163 (+) True G1495362
TU1709446 other upstream 1952804 81293440 ~ 81293926 (+) True G1495346
TU1712329 other downstream 349928 83614265 ~ 83634495 (+) True G1497918
TU1712638 other downstream 615595 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 861500 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 1231592 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 1251780 84516117 ~ 84517180 (+) False G1498912

Expression Profile