RNA id: XM_036950781.1


Basic Information

Item Value
RNA id XM_036950781.1
length 4741
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110494727
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83269647 ~ 83311364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacgctttcaCTCAACACGTTGCCTGGCCAGAAGTGTCTGTGCTCTTGGATAAGACAGTGTCTATGTTTGTTGACGGTGTATGATGTGATGATGTGAGAGCTCAGCTGTCTGAGAAAACGGGGCTCTGAGCTGAACAAAAACaaaggggtgggaggagagaagagtgagaggagagagaggagtggagcccACGTGCCTCAGAGCTGGAGCTGTATCTGTAGCTAGCCGTCGTGTCTCACTCTGCTAATGGAGGACTGGGGtGCCTGAAGACCAAGACCAAAACCTCCTCACGTCCTCTCTGACAAATCTAGGATCATGTCGGGTGCCTATGACGAGTCGGCCAGCCAGGAGGATGGCACAGACAGCTTCTGGGAGGTGGGAAACTATAAGCGTGCTGTGAAGCGGATTGATGATGGCCACCGGCTCTGCAATGACCTGATGAACTGTATACAAGAGCGTGCCAAAATCGAGAAGGCCTACAGCCAGCAGCTGACCGACTGGTCTAAGAGATGGAGACAGCTGGTGGATAAAGGGCCCCAGTACGGCAGTGTGGAGAGGGCCTGGGTGGCAATGATGACAGAGGCTGAGAAGGTGAGTGAGCTGCACCAGGATGTGAAGAACGGACTGCTCAACAATGACTTTGAGAAGGTGAAGAACTGGCAGAAGGACTCCTACCACAAACAGATGATGGGAGGCTTCAAGGAAAccaaagaggcagaggagggctTCAAGAAGGCTCAGAAACCATGGGCCAAGAAGCTCAAGGAGCTTGAGACTGCCAAGAAGACGTACCACCTGGCGTGTAAGGAGGAGAAGGTGGCATCCAGCAGAGAGGCCAACAGCAAGGCAGACACCTCAGTCACAGCCGACCAGCAGAAGAAGCTCCTGGACAAGGTGGACAAGTGCAAGCAGGACTCTCAGAAGGCTAAGGAGAAGTATGAGAAGACTCTGGATGAGCTGAGGAAGTGTACGCCCCAGTACATGGAGAACATGGAGACAGTGTTTGACACGTGTCAGCAGTTTGAGGAGAAGAGACTGAGCTTCCTCAGGGAGGTGCTGTTGGACATCAAACGACACCTCAACCTCACCGAGAACCAAAGTTACGCCACAGTGTACAGAGACCTGGAACACACCATCACCTCTGCCAGTGCACAAGATGACCTGAAGTGGTTCAGCAACAACCACGGCCCTGGTATGCATATGAACTGGCCCCAGTTTGAGgaGTACAATCCAGAGCTCACTCACATGATCAGCAAACGAGAGAAGTCGAAGAAAGGGGCAGACGGTATAATGCTGACTAGCGTGACAGCAGCACCCAACCATGTGGCAGCACCGAACCATGTGGCAGCACCGGCTGGAGACAGGGGCAGTGTGAGCAGCTCTGATAAGAACCAGGCCTACTCCTCCCAGGACCAGGCCTACTCCTCCCAGGACCAGGCCTACTCCTCCCAGGACCAGTCAGCAGAGTGGTCAGACGATGAGCAGGCCGCGCCAAACTCAGGCTCAGACACCAATGGGGGTGGAGCCAACCCCTTTGAGGATGAGTCAGCGAAGGGCGTACGGGTCAGGGCGCTGTACGACTATGACGGGCAGGAACAGGATGAACTCACCTTTAAAGCAGGAGACGAGCTAACTAAACTAGAAGACGAGGATGAGCAAGGCTGGTGTAAAGGCCTGTTGGACAGTGGCAAGTTGGGTTTATATCCTGCTAATTACGTAGAGCCCATCTAGTTGGGTTTATATCCTGCTAATTACGTAGAGCCCATTTTGTTGGGCTTATATCCTGCTAATTACGTAGAGCCCATCTAGTTGCTTGGGTcacccagactgaaccgtccaaTCATACTGCACATTGCCAGAGACTTCAAAGCAACGCttccctgttccccctctctgcctGACCAACCAACACACTAACTGAGCAGTCTTTATTTAAACACTCCCCTAGGACCCACTTCAGAGAAACACAGCACCAACATAACCAACACATATCAGCTACAACACTGGGATTGTTACCACAGTCAAACCATGGCAGTATGTGTGTACCAACAACACCACAACTCCTACGAGCGCAGGAAAATATTCTGCCGTGTTCTATTCCAATGTTGTGCTGTGGTTGTGATGAAATTTACCTGGCAGTATGGAAGTATGTTCCCTCGTAACACCAGTGATATGGTATAGTCAATGGTGCCTGCATAGCCAGAATAAGCTATGCACTGTGCATTGTAAATATTAGCAGATTTTTTTTGCAGCCTGGATGCTATGCGAAACTGTAcagtcctgtttttttttttttttttgcatctgTCATTCCATGTAAGGTTTTAAATATGCTGTACAGTACAACAGATTCTCACTCTTTTTCTATCTTTTCTATGTGAGTTGCTCCTGTGTTGAGTGTTATGCAGTGTTTGGTGTTTTCCCCCTGAAGTCCCCctgagcaacagcagcagcatgtCCTACTGGATCACAATAATGACATTTAGCTGATCCTGGACAAATCACTTTCGAGCGGAGCAGAGCAGTACTACACTGTTGAGCCTTGTTCAGTGTAACGGTATACAACAGTGTTTCTCTACACACCGTTGTACCAGGGACTGGTAAGCTTGGATGCCTGTTTATGTTGAAAACCTGCTCTCAAGATCAGATGAAATCAGTGTCTGTGACGCACTCAggcgtagtgggtgcggagtcaggcgcaggaggcagAAGGTACAGAATAGTGCTTTTATTTAGGCACAGTGAAAATCGTACGCGCCAAATACCGGGCGCACATCCACGATTGGCCCAAAAACAGGACCTAACTAGTCTGGAGAAAAATCCAAAACGAAACACACtaccacacataaacacagtgGAAAAATAAGCccacacaaagagcaggcggTCCTTACCAGCTTAAACAGCCCAACTaaaaacctaaacaagaaacaggtgaaaccaataagacaaaaccaacagaaaagggaaaagggatcggcggcagctagtagaccggtgacgacgaccgccgagctccacccgaacaggaagaggagccaccttcggtaggagtcgtgacagtgTCAGTCAGATAACCACCTGATGGACCACTCAGCAATGTCCCAGGGACCGGTTCCCATCGGACCATGGATCCTGGGAATGAGAAACACTGGTATAGAATACATACCTTCCCCAAGGCAGCATTGAGTGTACTTGTAGTACCTCTGACCATGTCCCTCATGTGCCTGTAATTTCCTGTGTAATTTCTTGACCCAACTGCTTTCTGGACTCATCACTTCTAGTACCTCTGACCATGTGTTGGGTTTAGGTGTGAGAGCATGTGAACAACACCCCCTTGCTTTTTTCTGGTTACATGTTTACCACAGTGGCTTTTTCAAAGGGTCAGGGTTCAAACATTAATTAGCCTACGTCGACCTCCACAAAGGTTCAGCACAAATACAAAATTGATccaacaccaccctactccatCAATGGTGAAACGGGAATAGGCTTGTCATCAGAAATGGACTTTCCCTGACCAAATTAAAGGAGCCAAAGAAATGTGGGGATATGAGCTAATTCTGGGAATTTGCTGTATGGATGATCACATTTACAGTAACAACCCAACGAGAGCCCCACTTCCCCATGGGAGATACTAGATCCTGTCTCCTCTGGCTCAACACTGTAACCATAACTGTTTTTGTTGCCATGGCTTCAGTTTATTATACGACTTCTATGTCCTGTCTTTTTTCTGAATGAAAATGATGTCACCTTTACTGTGTCCCGGCACCGTCTCCACCTTGCTATCTCTGATCTAACAGTCATTGCATGCTCGATCACCATAAATAAGCATTGAATTCTGCTGTGAGCTTACTGTACAAATTGACCAAATTGACCTAACTTTGTTTATGTTTTTATCCTGTCTGTTGAATCCTAAACGTAATCTTATGAAAACTGATGCCAATGATTTTGGTCTCTTAACTGGCAAAATTTAGACAAATCAGTATATTCAATGTTTTTTAACATCTCCAAATAATTGGGAGAATTGGAATCTATGCAGCATAAAATCCTGTTAAATCTCAATCCTTGTATTTTGAGCTGGTGAATCCAACAGAATCTTCAGCAGAGATTATACGTGTGACTGTTATATGACACAGCTGTTGTGTTCGTTTCCTTAGCAACCCTGGGAGGTAGTGAAGGCTATAATACCCTGACTGCTCTCTCAACACAAGAGGTGTGTACTCTTACAAAAAGCTACAGTACAAAGTGCACTGCAGAAAAAGGCAGAAAGCCGAGCCTCCACTGAAATATTGATGAGGAAACTGCATTTTCTGCTGCTAGAAGTTTATTCTGGAGATCTGGGATATATGGCTGTGGGGGGACATTTTGGGACTGTACACATCCGATTGTGGGATAAAACACTTTAACCATCAGCTCTCATAATGAGTGTTGTGGCAGCGCAAGCTCTGAAACACAAGCCTAGCTAACTCCGTAAATGCTTTACCTGAGCCACCACCCATACTCACAACACACACTCTaacagggagaaaaagagagcatGCATATTTAACGATGCATTTACCTTGCGTTTTACCTCGTTTTGCGTACTGTATGTAGGGGAACCAGTGGTTGGACATGTGGGAAAGCCCTAGTGGTCTAGAAGTCTGTCTGTTTAGAATAATAGCTATTTACTCTACAAACTGTAGTGCCTGTTCATCTGCATACAACAAAATAAAATTCTTCATCAAAACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1711814 lncRNA upstream 25969 83268653 ~ 83269149 (+) True G1497456
TU1711759 lncRNA upstream 27991 83264523 ~ 83267127 (+) False G1497405
TU1711842 lncRNA downstream 7665 83319029 ~ 83321822 (+) False G1497479
TU1711841 lncRNA downstream 9324 83320688 ~ 83321822 (+) True G1497479
TU1711868 lncRNA downstream 44378 83355742 ~ 83355942 (+) True G1497504
TU1711871 lncRNA downstream 50390 83361754 ~ 83362064 (+) True G1497507
TU1711873 lncRNA downstream 53468 83364832 ~ 83365207 (+) True G1497509
XM_021567437.2 mRNA upstream 30781 83246730 ~ 83264337 (+) False nudt3
NM_001165219.1 mRNA upstream 34429 83246877 ~ 83260689 (+) True nudt3
XM_021570018.2 mRNA upstream 577670 82668822 ~ 82717448 (+) False LOC110494719
XM_021570020.2 mRNA upstream 577670 82668822 ~ 82717448 (+) False LOC110494719
XM_021570019.2 mRNA upstream 577670 82698144 ~ 82717448 (+) True LOC110494719
trnae-uuc-8 mRNA downstream 126721 83438085 ~ 83438156 (+) True trnae-uuc-8
trnae-uuc-9 mRNA downstream 128061 83439425 ~ 83439496 (+) True trnae-uuc-9
trnar-acg-8 mRNA downstream 129117 83440481 ~ 83440553 (+) True trnar-acg-8
trnae-uuc-10 mRNA downstream 129400 83440764 ~ 83440835 (+) True trnae-uuc-10
trnar-acg-9 mRNA downstream 130456 83441820 ~ 83441892 (+) True trnar-acg-9
TU1710572 other upstream 1125368 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 1462017 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 1692961 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 1956955 81337017 ~ 81338163 (+) True G1495362
TU1709446 other upstream 2001192 81293440 ~ 81293926 (+) True G1495346
TU1712329 other downstream 302901 83614265 ~ 83634495 (+) True G1497918
TU1712638 other downstream 568568 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 814473 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 1184565 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 1204753 84516117 ~ 84517180 (+) False G1498912

Expression Profile