RNA id: XM_036948439.1


Basic Information

Item Value
RNA id XM_036948439.1
length 3604
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110494730
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83388660 ~ 83394882 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTATTACAACAAGATCTCTCAAGGTTTCGGTACCGCAAGATCGTCACTCTTTGTATACCACGTGACTAAATGCAGAGTAGGTCGTCCACAGAGTTTCAATCTTTGGTTCGTCACTCTGGCCGCCCTTGTGGTTTCACTTCCGCCATCTTTGTTTGAGCAGGGCTACGGACGCTTGACGGAGGCAACTGTTGAGAtatttggagcagtggaaaaaaCAATAACCGAGTTCCAGGAAGAAATTGCCAGTTCAAAGGAGGAGATCGAACGTCTACAGAGGCTTCTGGATTTGGCTTTGAAACCCGACTTAAAGTTACATAAATCAGATGCCAAGCACCTTACTCTCCCTGTCCCAGAGGAGGTTCCCCCTGAGAAGCGGCACTGTGAGCATGAGTGGAGCCCCAGTCTAGGCCAGGAGGAGCCAGAGCCCACACACATTGAAGGGGAAGAGGAGGTCAGGACCAGTCAGGAGGAGCAGCAGTATCAAGGACTAGAGCCCGACATAGAGTTCATATTTACTCCTCTCTGTGTGGAAAGTGACTATGATCAGGACCCACCCCAGCCTTCACCAACCACCAACACAACTGAAGAGATGGACGCCGAACCGGAGGGGGAGAGAAATGGGGCATCATTAACAACCAGTGACTTCCAGTCCCTCTCTGTAGAATATCCAGGATCCCCTGCAGCTCAGAACAACACCAGTGGAAGTGTTGATGTAGTGGCGAGTGGAGGACTACTGTCAGCATTGGGGTTAATACGGACAACCAGTATGCAAGCAAGTGTTGGAGGCCGGAGAACCAAAAAATTACCCCACAAGAAAGTACAAAGCTCCCATTCCAGTGCAGTAAGCAGGAAGACTACCAAGTTACCCCTTAAGATAGTGCAAAACCCAGATACCAGTGATGGAGGCAAGAAGACTACCAAGTTGCCCCTGAAGACGGTGCAAAGCCCAGATACCAGTGTAGTAGGCAGGAAGACGACCAAGTTACCCCTCAAGACAGTGCAAAGCCCTGATACCAGTGCAGTAGGCAGGAAGACTACCAAGTTGCCCCTAAAGCCAGTGCAAAGCCCTGATACCAGTGCAGTAGGCAGGAAGACTACCAAGTTACCCATCAAGACAGTGCAAAGCCCTGATACCAGTGCAGTAGGCAGGAAGACTACCAAGTTACCCCTCAAGACAGTGCGAAGCCCTGATACCAGTGCAGTAGGCAGGAAGACTACCAAGTTACCCCTCAAGACAGTGCAAAGCCCTGATACCAGTGCAGTAGGCAGGAAGACTGCCAAGTTACCCCTTAAGACCATGCAAAGCCCCAATACCAGTGATGGAGGCAGGAAGACTACCAAGTCACCCCTCAAGACAGTGCAAAGCCCCAATACCAGTGCAGTAGGCAGGAGAACTTCAAAGTCACCACgtataagaggagaggaggctggaGGACTACGGTCAGCACTGGGGTTAGTTCGGACATTGAGAGCACGGGTCAAGAAAGAACAAAGCTCTCCTGCCAGTGCTGAAGCGAGGAAAACTAAAAAGTTACCCCACAAGAAAAGACAAAGTTATCTTACCAGTGGTGGAGTCAGGAAAATCTCCAAGTTACCCAAGGTAACATCAGCCAATAAAAACCATACGGCACCTCATTGTTGCAAGATGTGTGGGAAGTCTTTTGTTTTCATGACTTATCTTGTTAGTCATGTGCAAAAAATTCATTTAAAGGATAAATACCATCTTTGTGGGGTTTGTGGGAAAGATTTTAGGTCCACAGATAGTATGGTGAAGCATCTGCAAACCCACATGGGAGTGAAGCATTTCTGCCACGCCTGTGCTAAAGTCTTCACTTGTAGTTCCAATCTGAAAGTGCATATGAGGAtccatacaggggagaagccatttCAGTGCAAACACTGTGGGAAAGGCTTCACTGTGAGAAAATCCCTGGAAGACCATGAGAAGACTCACACAGGGGAGAGGCCATTTAAGTGCACTTCATGTGGAAAATGTTTCTCATCAACGACTCATCTAAGTCGCCACCAGgaaattcacacaggagagaaaccctaTCAGTGCAACGATTGTGGGAAAAGCTTCAGTCGGAAGGAGAAACTGGCAGAACATATGAGGACCCATACAGGGGAGAAACCATATCCCTGCCCTGAATGTGGCAAATGCTTTGGTCTGAAGGGAAATCTGACCACCCATATGATAagacacacaggggagaaaccatgcagGTGCGAAGAATGTGGCAAATGTTTCTCTTTGAATGCAGACCTGAAAATTCATATGAGGACACACACGGGGGAGAAAAGATATAAGTGCAATGTTTGTGACAAATCCTTCACTCAGAAGGCGTACTTGGCTAGCCACATTATGAAACACACGGCAGAGAAACAACCGGTTCAATGACTGTGGTAAATGCTTCAATCAAATGGGAATCGTGAGAGAACGAGAAGAGCACTTAGAGTAAAAACTCCTCCGTTCATTGTGAATTTATTTTTGTCGTTTTCTGGTGTGAGAAATTGACAATACACCACCACAGTTCAAAAAGTTGAAAGAGACCTGTGTGGGGAAAATGTGAGGTTAGAACCTAGTTTGAGAGCACATTGTACTCTATATACCATTAGGAACCTTAGAGGACGACTGGGTAGAATTAACTTATGGTATGCATGAATAAACATGCAGAACATTGTTGAAAAGTTTGTAGATTGAGTGGATTTTTAAGGCAGAAGCAACAGTCCCAGCTAATTTATCAAATGTCACAACAATTTAGTCATTATCTTCTATTAGCAAAACTTATTTTGTTTGATTAAAGGGTTAGTTCAACCAAattacattggtttccttaccctgtaagtagTTTATGGACAAGGTATAATGGTAATTCATGTTTTGGTTTAGTTTCCTTGGCACTGTTTTCACatgctaacgttttagcatttgtgaCACATCCCATTAGAGTCATGGGACCGATTTGTGACTGAGGATCACAATCCATTTCAGATTCTtttggatgatttggacatgatgcgtgaaaaatgctaatatcagtagcatgacttgaatgggatttgtgccacaaacactaaaacgttagcatgtggaaaaggtcataacgttgtccatagactgcttacagggtaaggaaaccaatttgggtgaactatccctttaaggctaATGCGTTTGATATTAATGTATCTacttcacaggaggttggtggcaccttaattggggaagacGGGCTTATGGTAATGGCTGTAgcagaatcggtggaatggtatcaaatatagGGTTTCCACGTGTTTGACGCCATTCCagtcgctccgttccagccattattttgagctgtcctcccctcagtgCTGATCTATGTAATACTATATCATCGGTATCGGCTTGATTTCATCTTATGAAAGTATTTGTTGCAGCAATAACAAAGAATTGTGTACATGTTTTGTCATTTATTGTAATGGACTTCCTTAGCTCGACACCCAAATTAAATGTGTAGCTTTTTGTTTGACCTAACATCAGCATTTTGTGTGAAACCTATGAATATTTGTCCATTACATTTACCATTCattaaaaatgtacatttttgttcTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1712295 lncRNA downstream 9074 83379381 ~ 83379586 (-) True G1497887
TU1712290 lncRNA downstream 22926 83365528 ~ 83365734 (-) True G1497882
TU1712289 lncRNA downstream 23414 83364886 ~ 83365246 (-) True G1497881
TU1712283 lncRNA downstream 30411 83357938 ~ 83358249 (-) True G1497875
TU1712281 lncRNA downstream 37069 83351303 ~ 83351591 (-) True G1497873
TU1712299 lncRNA upstream 1 83394883 ~ 83395171 (-) True G1497891
TU1712309 lncRNA upstream 25106 83419988 ~ 83420639 (-) True G1497899
TU1712311 lncRNA upstream 33019 83427901 ~ 83428108 (-) True G1497901
TU1712430 lncRNA upstream 39688 83434570 ~ 83524555 (-) False G1498010
TU1712452 lncRNA upstream 100689 83495571 ~ 83521036 (-) True G1498026
XM_021570051.2 mRNA downstream 1329 83385666 ~ 83387331 (-) True LOC110494732
XM_021570048.2 mRNA downstream 12054 83367244 ~ 83376606 (-) True LOC110494729
XM_021570047.2 mRNA downstream 44809 83323505 ~ 83343851 (-) True LOC110494728
XM_021567430.2 mRNA downstream 120759 83264536 ~ 83267901 (-) False rs10
NM_001160622.2 mRNA downstream 121025 83264537 ~ 83267635 (-) True rs10
XM_021570050.2 mRNA upstream 2758 83397640 ~ 83408715 (-) True LOC110494731
XM_021570052.2 mRNA upstream 137630 83532512 ~ 83553720 (-) True LOC110494733
XM_021570060.2 mRNA upstream 213960 83608842 ~ 83629053 (-) False si:dkey-261l7.2
XM_021570061.2 mRNA upstream 213960 83608842 ~ 83629064 (-) True si:dkey-261l7.2
XM_021570068.2 mRNA upstream 442969 83837851 ~ 83849174 (-) False ccdc66
TU1711213 other downstream 727022 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 1142673 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 1148396 82235128 ~ 82240264 (-) False G1496689
TU1710622 other downstream 1213808 82172469 ~ 82174852 (-) False G1496390
TU1712523 other upstream 210361 83605243 ~ 83605753 (-) True G1498077
TU1712995 other upstream 587459 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 656128 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 1826243 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 1891774 85286656 ~ 85288117 (-) False G1499684

Expression Profile