RNA id: XM_021570050.2


Basic Information

Item Value
RNA id XM_021570050.2
length 2277
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110494731
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83397640 ~ 83408715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCGTGACCCGGAAGTATTTTTTTGTTGCTAACGAGACACTTATCTGAGGTCGTCTGTTCGTCTTTCACGCTACTGAACATGTCCAAACTACAGGTGTTGAATGCGTTTCTTACTCAGAAATTAACAGCGGTGGCTGTGGAGATATTTGGGGCAGTGGAGAAAATGATAACAGTGTACGAGGAAGAAATGTCCCGCTCAAATGAGGAGAGCAAACGACTACAAAGACTACTGGATTCGGCTTACAAACCAGAGATAAGATTACATAAAACAGAACCCCAGCAGCTCACTGTCCCAGTTCCTGAGGAGGTTCCCTCTGAGCAGCAGCACTGTGAGCAGGAGTGCAGCCCAGGTCTGGAGCAGGAGGACTCAGACCCTAcacagattaaagaggaacaggaggaccCAGATCACAcacagattaaagaggaacaggaggagatcaggaccagacaggaggaagagcagcttcagGGGCTGGAGTCTGATATCAAAGAGTTCATATTCACTCCTTCCTGTGTGAAAAATGACTGTGATCAGGACCCCCCTCAGCCCTCACATCTTTCCCAAAACCTAACAAtgcagaccagagagagggactTAGTATGCATCAGCACAACTACAGAGATGGAAACGGAACCTGGTGGCGAGGTTTACAGAGGAACAGAATCAAACAGTTACTCTCCACCCGTCCCTGTAGTAAATGGAGCTCAATGTGAAGTCAGTGAAAATGTTAACGGGGGGGTGCCAGTGTTAAAGCTACTACCAGTGTTAAAGCTActcaaatcaaagagaatgtggACAAATGAGAGACAAAATTTCAGTACCTCTGCAGAGGGCTGGAAAACCGATGCCATGACCAATCAAAAATCAGCCAGTCATGGCAATGCTGCTCCTTGTTGCAAAGTGTGTGGGAAGTCTTTTAAATTTCTGGTGGCTTTAATTAATCATGCGCAAACAGTACATGCAAATGATGCTAAAcatatgtgtggtgtgtgtggaaaAAACATGAACTCTTCTCAATGTATGATAGAACACCAACAATCTCACATTGCAGAAAAACCTTTTTGTCATATTTGTGGCAAATGTTTCCATTGTAATGCTAAACTGAGAACGCATATGCGtgtccacacaggagagagaccatATTGGtgccaaaaatgtggcaaaggcTTCAGGCAGCAGCAAAACCTGAAAGAGCATATGAGGACTCATACAGCGGAGAAACCGTATCGGTGCGAAGAATGTGGCAAATGCTTCAAACACTCGAGCAGCCTGACCGTGCATATGAGGAACCACACGGGGGAGAGACCATATAAGTGCCATTTTTGTGAGAAGTCCTTTGTCTCAGCAAGTAAACGAAGTCTCCACCAACGGATTACATTGGAAAGAACTGGAAACTGTTTCAGTGCAGCCAGTGCAGCAGAAGCTTTAGTCATGTGGGGACCCTGAGAAAGCACATGAAGAACATGTACAAACAGTTCCCCCAATTCCAAACCAACACCGCACCCCAAGCGACTCCAATGTCACATGTTGCTGAACTTAGAGGGTCACTTTCAGAATGGAGATTGTAATTAGCCCCTAACCCCTCAAGAATTTTCACTGATTCATCTTTGGGAGAACAATAATCTCCTGCAGTGATCATTCAGTGACAGAAGACATGTAATGTACACAGAACCATGTAGTGTGATACATTTAaatcttatccagagtgacttacatttATTGCGTTCATCTTAAGGCAAGGTTTCCCAAGGTAGGTCCTAGGCCTCCCCGAGTGCACGTTTTTGGTTTTTTTGCTtagcactacacaactgatttCAAATCATCAAAGTTTCATGAGgtgttggttatttgaatcagctatgTAGTGCTTAGggggaagaaaataaaaaaaagttaaccCAGGAGAAACCCTTTTGAGAAACTCTGTCTTAAGGTAACTAGGTGAGACAAGACCATATATCACAGTCgtatagtaaaaaaataaaaaaatgtaaaaaaagtgaAGATTCTGTAAATCTATATAAATGCATATAGTGACCACTGAATTGCTGTTACTGTAGGATAGACAGTCCTACACCCTTCCACATTCTGTGATCATTTTATTTTTGAAttcattgtttgttttttgtctACCAAGCTGAGAATATATGGAAAATCTGTGCTGTCATGTTTTAGGATGTTCATGTAACGGTGTTGTTATTGAGGCATAGTTTTACTTTGTCTGTAATATCTCTGCTAGATATtgaaataattaaaaaaatatgttttggctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1712299 lncRNA downstream 2469 83394883 ~ 83395171 (-) True G1497891
TU1712297 lncRNA downstream 4353 83393045 ~ 83393287 (-) True G1497889
TU1712295 lncRNA downstream 18054 83379381 ~ 83379586 (-) True G1497887
TU1712290 lncRNA downstream 31906 83365528 ~ 83365734 (-) True G1497882
TU1712289 lncRNA downstream 32394 83364886 ~ 83365246 (-) True G1497881
TU1712309 lncRNA upstream 11273 83419988 ~ 83420639 (-) True G1497899
TU1712311 lncRNA upstream 19186 83427901 ~ 83428108 (-) True G1497901
TU1712430 lncRNA upstream 25855 83434570 ~ 83524555 (-) False G1498010
TU1712452 lncRNA upstream 86856 83495571 ~ 83521036 (-) True G1498026
TU1712428 lncRNA upstream 106967 83515682 ~ 83524290 (-) False G1498010
XM_036948439.1 mRNA downstream 2758 83388660 ~ 83394882 (-) True LOC110494730
XM_021570051.2 mRNA downstream 10309 83385666 ~ 83387331 (-) True LOC110494732
XM_021570048.2 mRNA downstream 21034 83367244 ~ 83376606 (-) True LOC110494729
XM_021570047.2 mRNA downstream 53789 83323505 ~ 83343851 (-) True LOC110494728
XM_021567430.2 mRNA downstream 129739 83264536 ~ 83267901 (-) False rs10
XM_021570052.2 mRNA upstream 123797 83532512 ~ 83553720 (-) True LOC110494733
XM_021570060.2 mRNA upstream 200127 83608842 ~ 83629053 (-) False si:dkey-261l7.2
XM_021570061.2 mRNA upstream 200127 83608842 ~ 83629064 (-) True si:dkey-261l7.2
XM_021570068.2 mRNA upstream 429136 83837851 ~ 83849174 (-) False ccdc66
XM_021570069.2 mRNA upstream 429136 83837851 ~ 83849175 (-) False ccdc66
TU1711213 other downstream 736002 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 1151653 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 1157376 82235128 ~ 82240264 (-) False G1496689
TU1710622 other downstream 1222788 82172469 ~ 82174852 (-) False G1496390
TU1712523 other upstream 196528 83605243 ~ 83605753 (-) True G1498077
TU1712995 other upstream 573626 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 642295 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 1812410 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 1877941 85286656 ~ 85288117 (-) False G1499684

Expression Profile