RNA id: TCONS_00046480


Basic Information

Item Value
RNA id TCONS_00046480
length 654
RNA type nonsense_mediated_decay
GC content 0.49
exon number 6
gene id XLOC_023496
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 26354696 ~ 26369185 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATCAGCCGAGAACTTCTTTGAAGGAACAATGGACTCATCAGAAGCTGCCAGAGGGAAGGAGAGTGTTCAGAAAAGATCTCCTCTAGATCTGATTATGAACCAGCTGCGAAGAAAAACTTCTTtcacagagagaaagaaaacatctgtaGGACGACTCTTCCGACCATCCGAGAGCAGCGACAGGAAAAATGGAGGAATACCTGAGATAAAGGAATCAGACCTCAGTGAAGGAAAAGAAAATAAGGAGCCCGAGAGAGAGAGCAGCATCACGGCTGAGGAGAGTGGCTCAGTTGTGGGCTGGGGTCGGGTCAAGCAGTTCATGCAGAAGCTCGGCAAAACTCCTCACAGTCACAGCCTGAGCCTGAGCCACTGTGATCTGACAGCCACAGATTTAGTGGAACTggCCACCCTGCTGCCGTTCATGTCTGAGTAAAGCTCTTCCACTGTTGTCTGGTTTGGAAGAATTAGATTTGTCTAATAACAAGCTGTCAATAAAGGGAATGGAGAACCTCACCTCCTCCTTCAGCGCAACTCCAAGGCTGAAGACCTTAAAGCTGAGCATGTGTGGACTCGGTAAAGACCATCTCAGTGCCCTGGGCCAGGCGTTCAGGTTCATCACTGCACTAGAGCACATGGATCTATCGTGTAATAA

Function

GO:

id name namespace
GO:0031532 actin cytoskeleton reorganization biological_process
GO:0051179 localization biological_process
GO:0033036 macromolecule localization biological_process
GO:0051641 cellular localization biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-091204-286 Orthologous to human LRRC31 (leucine rich repeat containing 31).

Ensembl:

ensembl_id ENSDART00000143411

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046867 lncRNA downstream 125168 26232700 ~ 26236578 (-) False XLOC_023491
TCONS_00046866 lncRNA downstream 125168 26232700 ~ 26236578 (-) True XLOC_023491
TCONS_00047204 lncRNA downstream 329475 26031248 ~ 26032271 (-) True XLOC_023490
TCONS_00047203 lncRNA downstream 607600 25750636 ~ 25754146 (-) True XLOC_023487
TCONS_00046461 lncRNA downstream 949659 25408604 ~ 25412087 (-) False XLOC_023483
TCONS_00047208 lncRNA upstream 17289 26386160 ~ 26386982 (-) True XLOC_023497
TCONS_00046485 lncRNA upstream 106311 26475182 ~ 26477731 (-) False XLOC_023500
TCONS_00046868 lncRNA upstream 273028 26641899 ~ 26644190 (-) False XLOC_023503
TCONS_00047209 lncRNA upstream 273028 26641899 ~ 26648023 (-) True XLOC_023503
TCONS_00047210 lncRNA upstream 579841 26948712 ~ 26952044 (-) False XLOC_023507
TCONS_00046477 mRNA downstream 33025 26306363 ~ 26328721 (-) True XLOC_023495
TCONS_00046476 mRNA downstream 50892 26306362 ~ 26310854 (-) False XLOC_023495
TCONS_00046475 mRNA downstream 57360 26302781 ~ 26304386 (-) True XLOC_023494
TCONS_00046474 mRNA downstream 59371 26284514 ~ 26302375 (-) True XLOC_023493
TCONS_00046473 mRNA downstream 78387 26279503 ~ 26283359 (-) True XLOC_023492
TCONS_00046481 mRNA upstream 4470 26373341 ~ 26383978 (-) False XLOC_023497
TCONS_00046482 mRNA upstream 4470 26373341 ~ 26386627 (-) False XLOC_023497
TCONS_00046483 mRNA upstream 26334 26395205 ~ 26399623 (-) True XLOC_023498
TCONS_00046484 mRNA upstream 77450 26446321 ~ 26460853 (-) True XLOC_023499
TCONS_00046486 mRNA upstream 106311 26475182 ~ 26479841 (-) True XLOC_023500
TCONS_00046441 other downstream 1337723 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046414 other downstream 2198636 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other downstream 2214871 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046409 other downstream 2243351 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046400 other downstream 2384461 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046487 other upstream 106311 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 140017 26508888 ~ 26534654 (-) False XLOC_023502
TCONS_00046542 other upstream 2658557 29027428 ~ 29028548 (-) False XLOC_023535
TCONS_00046544 other upstream 2658577 29027448 ~ 29030632 (-) False XLOC_023535
TCONS_00046545 other upstream 2659531 29028402 ~ 29029657 (-) False XLOC_023535

Expression Profile

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