RNA id: TCONS_00047208


Basic Information

Item Value
RNA id TCONS_00047208
length 823
lncRNA type read_through
GC content 0.44
exon number 1
gene id XLOC_023497
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 26373341 ~ 26386982 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTATCGCGCTTCTCAACAACTCCAGTAAGTTCACCGCACGTAAACCCTGATCTCTAGACAGACTTCCTCCTCCAGCCTTCACGGTTGCCATAGCTATAGTTGGCAGTGGCGACCGACAACCGACGCGCTATTGGACAGACAAGACATCATTCAGACAACATCACCAATCAGCGGTCACCCCAAAGGCGGGACCCGTAGGAACGCAGGAACGCCCCCCAGATTGCGAGACAGACAGACTTCCTCCGCTAAATCACGCCGTCTGGCCGCGGCAGCCCGGCGGGTGACGTAGGCTGTCGGGTTGTGGATTGACGTTGTGAGTCTATCAGCATGAAGCCTGTACCAGTGTTATCAGAGTGACGGCGACGGGCGAACGGTCGACGGTGAACTCCGAGGCGGAATCCCGAGatattgaaaacacacacatatttaacgCGCTGTCCTTCTCTTATCGTCAAAACAAAGCTGAATTGACACTCAGGATTTAAAGGTAAGACTGAATGTGTGTAGTTTTATTCGGTTTGACGTTACAGATTTACATTATTCATTACGAAAGCTGGTATTTAGTATTTCTAACGAGTACTAACGTTGGTTAGCCGTGTCATGCGCATTTTTTGTGtcattttagtttcatttattcGTCAGTGTCACGTATTTAATCATATACGAGTAGTTTGAGTTATGTTTTATATGTGATATCTGTAAGCCAGCTCATAGACATGTCACCTCTGATGTTCGACAGTAATCCATAAACGTTACGTTCAAATGCTGTAATTTGgataaattaatgttatttaaataaaatcatgttttattataacatt

Function

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0046332 SMAD binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047207 lncRNA downstream 16978 26358992 ~ 26369182 (-) False XLOC_023496
TCONS_00047206 lncRNA downstream 17289 26354696 ~ 26368871 (-) False XLOC_023496
TCONS_00047205 lncRNA downstream 17319 26354696 ~ 26368841 (-) False XLOC_023496
TCONS_00046867 lncRNA downstream 149582 26232700 ~ 26236578 (-) False XLOC_023491
TCONS_00046866 lncRNA downstream 149582 26232700 ~ 26236578 (-) True XLOC_023491
TCONS_00046485 lncRNA upstream 88200 26475182 ~ 26477731 (-) False XLOC_023500
TCONS_00046868 lncRNA upstream 254917 26641899 ~ 26644190 (-) False XLOC_023503
TCONS_00047209 lncRNA upstream 254917 26641899 ~ 26648023 (-) True XLOC_023503
TCONS_00047210 lncRNA upstream 561730 26948712 ~ 26952044 (-) False XLOC_023507
TCONS_00046508 lncRNA upstream 851799 27238781 ~ 27244428 (-) False XLOC_023508
TCONS_00046481 mRNA downstream 2182 26373341 ~ 26383978 (-) False XLOC_023497
TCONS_00046478 mRNA downstream 16975 26354768 ~ 26369185 (-) False XLOC_023496
TCONS_00046477 mRNA downstream 57439 26306363 ~ 26328721 (-) True XLOC_023495
TCONS_00046476 mRNA downstream 75306 26306362 ~ 26310854 (-) False XLOC_023495
TCONS_00046475 mRNA downstream 81774 26302781 ~ 26304386 (-) True XLOC_023494
TCONS_00046483 mRNA upstream 8223 26395205 ~ 26399623 (-) True XLOC_023498
TCONS_00046484 mRNA upstream 59339 26446321 ~ 26460853 (-) True XLOC_023499
TCONS_00046486 mRNA upstream 88200 26475182 ~ 26479841 (-) True XLOC_023500
TCONS_00046488 mRNA upstream 94318 26481300 ~ 26485241 (-) False XLOC_023501
TCONS_00046489 mRNA upstream 95340 26482322 ~ 26485345 (-) False XLOC_023501
TCONS_00046480 other downstream 17289 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046479 other downstream 23689 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046441 other downstream 1362137 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046414 other downstream 2223050 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other downstream 2239285 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046487 other upstream 88200 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 121906 26508888 ~ 26534654 (-) False XLOC_023502
TCONS_00046542 other upstream 2640446 29027428 ~ 29028548 (-) False XLOC_023535
TCONS_00046544 other upstream 2640466 29027448 ~ 29030632 (-) False XLOC_023535
TCONS_00046545 other upstream 2641420 29028402 ~ 29029657 (-) False XLOC_023535

Expression Profile

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