RNA id: XM_021570061.2


Basic Information

Item Value
RNA id XM_021570061.2
length 1382
RNA type mRNA
GC content 0.49
exon number 7
gene id si:dkey-261l7.2
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83608842 ~ 83629064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGACAATTTTGTAAATGTAAATATGCAGGTGCGCTTGCAGGACACAGAGTGTATTTATGTAAATATAACTACCGAGGGACACCGAAGCCACTGAGCTGTTTCTCCTCGCGCCATGGCTTGTCCCGCACACCACAGCACAACTGCTGTCAACAGACTTTACTAGTTGACTTCCTCAGGAACGATGTCAAACAGATAGTTATTTAAAAGTTGATTTGACTTGGGATTTCTTGTAATCACGGCCAGGTGTCGTGATGCCCCAGTTAACAGTGGCAACCATCCTGCAGCTCACCCTACTGCTCTCCGCACTACCAGCCCAGTACCTCATCTCCCGGTGGACCGGAGCGTCCGTAGCGCAGCGCTACCACGCCACCAAACGGTTGTTGGGTACGTGGGGTGAGTGGAGGAAGTCCTACCTGAACACCACTGTCTGGACAGAGTGGATCGCAGACCTTATGGATAGAATCACGATGctggtgggaggggaagaggagggagaggttcCTGGAGAGTCTCCTGCTCTGGAGGTCATGCTGCAAGACAACGACCTGGGCTtctttggagCCTCCCGGTCGGTCCGTAGGCCGCGCCCTCCCTTCGTCTTCCTGCGTGTgggtgatgtcgtcatggagcgGAATGGTCACATGATCGGGGTGATCGTCAGCTGGGACCCAGAGCTCCGAGCCCCCCCAGAGTGGATGAGCAGGTTGCACCCAAATGAGGAGgttaacGCAGAGAACACCCCCCACTATAAGGTGTTATTCAGTGGTCCTGGCCCCTCCTCTCTCCTAGTGGGATACCTGCCTCAGACCAGGCTGGAACGGGTCACTGGAACCAGGccgGAGATCCCCACCCTAGAACAGTACTTCACACACTTTGATGGAGAGCGGTTTATCATGCAGCCCTGGCTCCAAGAGATCTTCCCTGAAGACTGACAGACGGGGAccacaagagtgtgtgtgtgtgtgtcagtgggacACCTAACTGGACGGTAGATGTAAAGAAAAGGacagctcctctctctgttccccccacAACAAGATCAATTTAATTTCACACAGTAATTTAGTAGAGGGGAAAAGGCTCACGCCTTTAGCCACCTACTGTGGAAAAATGCATTGAAAATATAGGAAGCATTATTTTATTAGCTGCAAACGGTGATCAGCGTTTACCCACCTACTGTTTTAACCACTACATCATTGAAGATGTCATACAGTATTTCATTTCAGAACAAAATTAAAGACAGAAAATATAATACAGTTCATTATCATAAAGACCTCAAACTTGAATCAAGAACAGCCACATTTACATAATTTATTGACATTCATGTTTATGGACAGAAGCTTTGAggaaaagcttaaataaatattATTCTAAACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1712520 lncRNA downstream 4323 83604307 ~ 83604519 (-) True G1498075
TU1712519 lncRNA downstream 4617 83604011 ~ 83604225 (-) True G1498074
TU1712518 lncRNA downstream 4882 83603685 ~ 83603960 (-) True G1498073
TU1712513 lncRNA downstream 11963 83596677 ~ 83596879 (-) True G1498068
TU1712490 lncRNA downstream 44646 83563912 ~ 83564196 (-) True G1498047
TU1712561 lncRNA upstream 58422 83687486 ~ 83688222 (-) True G1498115
TU1712775 lncRNA upstream 128571 83757635 ~ 83757863 (-) True G1498308
TU1712777 lncRNA upstream 130028 83759092 ~ 83759314 (-) True G1498310
TU1712784 lncRNA upstream 139809 83768873 ~ 83769236 (-) True G1498317
TU1712791 lncRNA upstream 145862 83774926 ~ 83775173 (-) True G1498321
XM_021570052.2 mRNA downstream 55122 83532512 ~ 83553720 (-) True LOC110494733
XM_021570050.2 mRNA downstream 200127 83397640 ~ 83408715 (-) True LOC110494731
XM_036948439.1 mRNA downstream 213960 83388660 ~ 83394882 (-) True LOC110494730
XM_021570051.2 mRNA downstream 221511 83385666 ~ 83387331 (-) True LOC110494732
XM_021570048.2 mRNA downstream 232236 83367244 ~ 83376606 (-) True LOC110494729
XM_021570068.2 mRNA upstream 208787 83837851 ~ 83849174 (-) False ccdc66
XM_021570069.2 mRNA upstream 208787 83837851 ~ 83849175 (-) False ccdc66
XM_021570071.2 mRNA upstream 208787 83837851 ~ 83849176 (-) False ccdc66
XM_036950794.1 mRNA upstream 208787 83837851 ~ 83849176 (-) False ccdc66
XM_021570070.2 mRNA upstream 208787 83837851 ~ 83852057 (-) False ccdc66
TU1712523 other downstream 3089 83605243 ~ 83605753 (-) True G1498077
TU1711213 other downstream 947204 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 1362855 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 1368578 82235128 ~ 82240264 (-) False G1496689
TU1710627 other downstream 1433990 82172469 ~ 82174852 (-) True G1496390
TU1712995 other upstream 353277 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 421946 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 1592061 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 1657592 85286656 ~ 85288117 (-) False G1499684
TU1714522 other upstream 1657592 85286656 ~ 85288117 (-) True G1499684

Expression Profile