RNA id: XM_021570063.2


Basic Information

Item Value
RNA id XM_021570063.2
length 1563
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110494740
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83629188 ~ 83630857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATATATTATTTTTAGAAGTGAAACAGGAAGTCTGTCAGAAACTTGAGACATGCTACACAAGGCTACacttcaaaatcatgggcaaacTGTCAATCTTTTTGTTTGTTCTTTCATTTTACACCATTGTCAACGCAGGTTCAGGATCACATTCTCTGTGGGCACTTGCAACATACATAATCGGAGAGACACCTTTCCCTGAGTTTACAGTTGTGTTGATGTTGGATGATGTTCAAATAGGTTACTATGACTCCAACATTAAACTGTCTGTCTACAGGGGTTACCATATTACAGACAAAATAAATGACGAAGCTCAGGATGGAAGTTATGTACTTGGAACTATGTACCACCACATGAAAGAGAGATCATTTCGCCTAAAGCACCACTTAAATCTCACGGAAGGTGTTCACGTTCAGCAAAGAATTGGTGGCTGTGAGATATTGCACAATGGTGAACCGGCCCTGATCATGACAAAGAACTCTTTTAATGGAATTTTTGCAGATTATGCGGTATATTACAACATGACACATTTTACATATGATTCTGGGCAACTCCTACTAGGATATAATTGGATGAGGCAAGCAACTGAAAGAACACTTTATGCTAATGTTTGGCTTCCTATTTGCATCAACACACTGAAAAAATGCCTGAACAGAGAGAAGAACTTTGTGATGCGGAGAGTGCCTCCCAGACTCAGGTTGATAAAGAAAGAGGTTTCTGGAGACCTCCAGGTGATCTGCCTGGCGTTTGGTTTCTACCCCCGCCACATCAACTTGACCCTGCTGAGAGACGGCCATCCAGTGGCAGAACAGGAGCTGACAGGGGGGGAGGTACTGCCTAGTGGAGACGGGACCTACCAGCTGAGGAAGAGTATTTATGTCAGTACTGAGAAGCTAAGGGAGAAACACAACTACACCTGCACTGCCTCTCACCTCAGTCTGAACAACAAGCTGGATGTCAGTTGGGAGTCTGGGGCAGAGAGAGTTCACCTATTCATCCTCTCAGCTCCACTGGTGATGGCGCTGATTGTTATTCTGTTCTGCATTTTAATTTGCCTCGCAAGGAGGATACGCGCCGCATCGCAGAATTTGCAACTAGCCAGCGTTGATGCATTAGAGGCAGATGAAAGGAACTTGTCATCAGATTCTGAGATCTAATATTTTTTGGGGGACACTGATGCAACTTTGTCAATTCACAATGACACCTATGACTATGAGAGCAGACACAAAATGTGCcaatcattattttattattggTTGATTTCCCAACCCCACAACAAACAACTATTAAAGGATCAAGTTGTGGAGACTGTTGACAATTACAAATATCTGGGCATTGGTCCAGATTTGcatgtatatattttacattaacAAAAGTAATCTTTTAATCATTTCAAATCATGACTTTTCATTAATTACACAATACACTTTATATCTGTGTTGTATTTCCTGATATCCAGTATCTAAACCAGGAGACagtggtgtgtatttatgggtGCCAAGGGAAGCCGGGCTTCCCCAAAGAatttacaaagaaaaaaacattaaatcatttatattttgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1712396 lncRNA upstream 6587 83618856 ~ 83622608 (+) True G1497978
TU1712395 lncRNA upstream 20987 83607724 ~ 83608208 (+) True G1497977
TU1712392 lncRNA upstream 23329 83605658 ~ 83605866 (+) True G1497974
TU1712334 lncRNA upstream 66133 83562547 ~ 83563062 (+) True LOC110494735
TU1712364 lncRNA upstream 100373 83528602 ~ 83528822 (+) True G1497947
TU1712425 lncRNA downstream 56809 83687666 ~ 83689358 (+) True G1498007
TU1712406 lncRNA downstream 69933 83700790 ~ 83701392 (+) True LOC110494741
TU1712407 lncRNA downstream 71609 83702466 ~ 83702810 (+) True G1497989
TU1712576 lncRNA downstream 73362 83704219 ~ 83748099 (+) False LOC110493277
TU1712606 lncRNA downstream 117531 83748388 ~ 83748612 (+) True G1498156
XM_021570059.2 mRNA upstream 20307 83603639 ~ 83608888 (+) True irak1bp1
XM_021570058.2 mRNA upstream 33654 83592762 ~ 83595541 (+) True hesx1
XM_036950786.1 mRNA upstream 36576 83576027 ~ 83592619 (+) False LOC110494736
XM_036950787.1 mRNA upstream 36576 83576027 ~ 83592619 (+) True LOC110494736
XM_021570055.2 mRNA upstream 54011 83562178 ~ 83575184 (+) False LOC110494735
XM_036950788.1 mRNA downstream 11588 83642445 ~ 83701922 (+) False LOC110494741
XM_036950789.1 mRNA downstream 11590 83642447 ~ 83701921 (+) False LOC110494741
XM_036950790.1 mRNA downstream 11807 83642664 ~ 83701923 (+) False LOC110494741
XM_036950798.1 mRNA downstream 73306 83704163 ~ 83809312 (+) False LOC110493277
XM_036950800.1 mRNA downstream 105640 83736497 ~ 83809312 (+) False LOC110493277
TU1710572 other upstream 1459445 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 1796094 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 2027038 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 2291032 81337017 ~ 81338163 (+) True G1495362
TU1709446 other upstream 2335269 81293440 ~ 81293926 (+) True G1495346
TU1712638 other downstream 249075 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 494980 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 865072 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 885260 84516117 ~ 84517180 (+) False G1498912
TU1713565 other downstream 896908 84527765 ~ 84554229 (+) False G1498912

Expression Profile