RNA id: XM_036950789.1


Basic Information

Item Value
RNA id XM_036950789.1
length 5590
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC110494741
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83642445 ~ 83701923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGGGGGAAAattttcggcacaacaccggACCTGCCAAATAGCCTACTAACTTTTTGCCAACCAACTTCAGTAGTGGTCTCTCAATAGCTGTAGGTAGGCTGCTACGGGCCACAGCCCCACCTTGCAGGGAACACTACTCCGTCTCGGACTTCACAGATAACAACATTCTGAGTCAGACGGCTCAACCTCCAGTCTGAACAGATAGTCTTCATGGACTAGAGGGGATGGCTGCGCGACCGAGACTATTTTACCTACTCACAACTTTATTCCTGTTTTTAAACTACTACTCTGCATTACCGGCGACTGGCACCAAGAAAGGAAACTCGGATAAATGCAACTATAAGgggcTCCAGGTTCAGTCAAGTTCTGACGAGAATGGTCGGAAGCTCGGGGTCACATTCCGAACAGACAATTGCTCTGTGAACTGGAGCCCATTGGGGAAGCATGCCATCTATGAGGTGAACAATGTGACGTTCAGCCACCTCTCCTGTGACAGCCAGGCTGCTGTGGTGGTCCACTGGATGAGCAGCCCTCTAGGTATAGAGCATGTGAAGGGCTTCAGAGTTTACCTGGAGGACAAGGACCCAGAGGGAAAGCTGTGTCAGCACATGATCCTCAAAGACCCACGACAGCTCAACTTTTCTTACAGCAATGTGATGATGAACTCTCAGCCCTTCCCTGGCCTGGCCTTTGAGACGGACTACATGATCCGGATAGTTCCTTTCCCCACCTTCATGAATGACAGcttcttccctccatccttcctgcGCACCAACTCCTGTGAAGTGCTTCTGGGACCCGACAACCTCGTCTGCAAACCATTCTGGAAGCCCAAGACCCTCAACATCTCTCAGCGGGGCACCAACCTCCATGTTGTCTTTGACCACGCCCCCTCCACCTTCGGCTTCACCGTTTACTACCTGTACTACAAACTACGACAGGAGGGACCCTTCAGGCTCAAACGCTGCAAACCGGAGTTAAACCTGCCCAAAACAACATGTGTTCTTCAAGATGTGATACCAGGAACCTATGCGATTGAGCTGCGAGATGACACCAACACCACCAGGAGACAGGCCCAGTACCACGTGAGCCAAGCCCACTCCCCGTGGGCAGGTCCTATCAGAGCCATGGCCATCACTGTTCCTCTGGTCATCATTTCTGCCTTTGCTACACTCTTCACCGTCATGTGCCGCAAGAAACAACAAGagAACATCTACTCCCATCTGGACGAGGAGAGCTCTGAGTCATCGTCTCACACCACAGCTCTGAATGCAGACAGGCCCTGGCCCCGGACCAAGGTGTTTGTCTGCTACTCCACTAAGGACTGCCCCAAACACCTCGCTGTCATACAGAGCTTCGCCTTCTTCCTCCAGGACTTCTGTGGCTGTGAGGTGACTCTGGACCTATGGGAGCACCTGCAGATCTGTAAGGAGGGCCAGATGTCCTGGCTGAGCCGGCAGATAGATGAGGCTCACTACATCATCACTGTCTGCTCCAAGGGCCTTAAGTACTACGTAGAGAAGAAAAACCGCAGAGGGAAATCACCAGCCAGAACTTGCCCTGGAGGTGGtggagcagcagcagcggcagcagCGAATGGAGCAGAGCTCTTCATCGTTGCCGTGGCAATGATCGCAGAGAAGCTTCGCGAGGGGTGCCAGAAAGACCAGGACCTGTCTCGTTTCATGGCCATCTACTTTGACTACTCCCACGAGAGCGATGTCCCCACCATGCTGAGCCTGGCTCCCAAGTTTAAGCTCATGGATCAGCTCCCTCAGATGTTCAGCCTCCTCCACTCTCGACAGCTCAGTTTACCAGAGCGCGAACCGCAGCCTCTCAACATCAGCAAGAGGAACTACTTCCGGAGCAAGTCGGGGCGGTCTCTATACGTAGCCATCTGTAACATGCACCAGCACATTTCTCTGGAGCCTGATTGGTTCGAGAGGCAGCTGATGCCTGCCCCCCCAGCCCCGCCTCCGAAGCAGCGTGACGCCGCCAGAACGTCTTCGTCATCATCACCTCACATGGAGAAGTTTGACTCTGGGCTGGTGCTCAATGAGGTTCTGTTTAAGTTGCCATCAGAAAGTGAGGGTACTCTGAAGAGGAATGTGCTGCTCACGTCTCTCCCACCCAACCTCAGTCTGGCCCACTGCTCCCTGGACAGACCTGTGGGGCCTGGGCCTGGCTCCAGCCTCTCTCAGGGGGAGATCGGGGGGCTGTCGGGGGCCTCATCTGGTCTGGGTCCTCTGGGTCTGGGGTCTCTGAGGCCTGTGGTCCCTCCTCAGGCTGGGGATGGCTCGGCCAGTCCTCCAGAGATGCCCAGGGACTCGGGGATCTATGATTCGTCAGTGCCTTCCTCTGAGCTGTCCATCCCCCTCATGGAGGGCCTGTCACCTGACCAGGCTGACTCCTCCTCTCTGGCCGAAAGCGAATCATCTTCTTCCGGACTGGGTGATGAGGAGCCACCTGCTGTCAGCTCTCTGCGCTGCGCCATGGCAACCATCTGTAAAGCTGAGCTCCACCAACACCATCTAAAGCAGTCTGAAGGACTGGGGCTccctcctgttcctgttcctcccTTGTAGTGAACGGAACAACGACTTTACAGTACCTGGACACCCATAACGACACTTTACTGCCTTCAAAGACACTGCCTTGATACGGACCATCATCCTGAGTTGTACGAGCTATCTAAAACATTGAATCCCAAATGAACAGTGTACGGTAACCAAGCCCATGGATGTCAGTGATGTCATCCGCTATGGAATCTCTGTGGACTTGTGGCTGATAGAACACTGAGGAATGTTGATGTCATTGTTTTAGAACACAGAGGGTTTTGTGAACGTTCTAAGTTGTGTGAAGACAAGGCGTTATTTAATCAAATGGTTGTATGTTGTTTTGCATCGCTGTCCTGTATTTGTTAGTGTTCTAACGGTGTTTATTTTAGACTAGGCCAGATCTTCCCTTTAAAACATCCCATACCAGGTTACTAGTTCACTAACACACCTGCTTCAACTCCTCTAATAATCATCAACCCTAGATTACTTGAattaggtgtgttagtgctgggcttgAACAAAAAATCTGGACTTCAACACCAGATGTAGTGTGTTTCTAACTGGGACAATTTCGTGAGCCAGTAGTGATGACCATGCTCTTTTAAGTGAGAGAACGTTGGTTTGTTACTTCAttctaatttattgaaaattatgAAATATGAAATTACTTTTTAAGGATACAAGGTGCTGAAATTATTGTGTCAAAACACTtttacttgttttttttaatgtagttTTCACACCAATTTGTTTTACTAATAGAAAAGGTTTGACAACTCTTGTGTAAGAGATCAGATATATTGGGAGtacctagggctgtggcggttcATGACATctcgtcagccggtgattgtcaagcaaataactgtcggtctcacggtaattgaccgtcaattaacataaacacatttagcatctcctggtttccacacatagcctacaagccactgatgcagacattTGGatcatctacattttaaaaagtctattaaatccatgtaataaagccaacaccttcacaataaatccattattattttagaccggtctaaagaagcatgatggTGAAGATAAtatagtctatttcagaagaactgaattgcatactctgagttgtcctgatgttagttcctgatctggctatgccatgtGGCTGTTGGCTACAATAGTTAATTTAGCGGACAAGACTTGgttagaattctgtggcattattttacattattttatattatgaagaatacaattgaacaaagatgaataaaatataaaggatgttttctccaaatgatttgagggGTGTGCACATGTGCTATTCTGTtttgagcggttaacaaataaATAgatactcctatatgcttaatttaaaattaataatgtaactttagttgttcaacaaacgttgggctatatgttttgattttttaatacattgtaaggctgcatgatgagactaatGATCATTTGAAAAAAGTTGTTTGAAAGGCATGTGCTCTgcttagttttttttttgttgcgcTGGCTGTTGcctacacacttcatcagtctctcattcacaatttgacaagcgcTTGACAATGCCTCGAATTTCCCAggggcatcccctttgtgtggccgatGCACCCTAAAACAAGTTGTGCGTTTGGCGGCCAGTACCCGTTGTTCCTTTCTCCCTGATTGCTACATGCTTCGAAGCACCCCTCACTCACATGGCTCAGGTCGTTCTCACAAGCTACAAGTGAAGAGCAACCCTTCGGGAACACAactccttatccaattccgagtaCATATTGAATATATTGGAAGAAgagtccacatttactttttgtcaaccaacaagatgagtaggcctaatgaacagcaaaagcactagtctatgtcaatctactatcccccatagtacaaaagtttacTTATTCTATTCTTTGCGAGAAATACaaattccaaacatagtctgggacagttgtgggatgtgatagatcccaaattattACAACCACTAGCATTAAACAAGCTTTTTTACGCGATGAGACTGAAGCAACAGATCGGAACGTTTATCTTAAAATGTGATAAACTATTAGCCTATTTCATCacataagcgcagcaatgcacacatggcagtaggccattatcaaaagtgacttTATGCATTATGctattatgcatgtaatgcttttattataaaggtgcatttttatgctGAACATTTTCTTCTCCGAACTTGAGACTCACGCGCTGCTTaagtatgtatgccagttaggctctaccacccttgtaaagcagattaatgtacttcattttaagaaattatttggccactttagatGTGATAATAACctttatcaaaacatatagacctatgggctggcctacatgaggtgtgtgactatgattaGAAAAATTCACAAAAAAAGGGATTGTTTCTTGCAATATCAGCCCATCAATATTAGTGATAAGCTAATATTTTCAcacatcagactattcttgatttaatcttgtctttacatatactaaataatatatctgtgaaatgtctcatgaagtgtttgattacatttttgattacatttgcatttaTGTCAgaatgattagagggacaatcgagtgctgagtaccaggcagttagcaatcTTGGAAGACTACTAATGACcgtcagcagcatcagagcttggagaaagCCGGTGTTGCGGTAATATGGTTACCACCCCAGGAGTACCCACACTATTTGATCATATATTTGACACCAgcagttctgcattttttttgtCTCCATCAGAAGAGTGGACAGGGGTGTCCATTTTAGGAGCAATTTCATAAACTAAATGTCTTTATTTGAAACTTGGGAAATATACTGTTATTCAACTCTTAAAGAGAAAAAACGAAttcagcgcattcggaaagtattcagaccccttgacttttcccccaTTTTGTTAAAGTTACAGCCGTAttcaaaaattgattaaattaacacgtggtcatcaatctacacacaatacccagtaatgacaaagtgaaaacaggtttttagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1712396 lncRNA upstream 19839 83618856 ~ 83622608 (+) True G1497978
TU1712395 lncRNA upstream 34239 83607724 ~ 83608208 (+) True G1497977
TU1712392 lncRNA upstream 36581 83605658 ~ 83605866 (+) True G1497974
TU1712334 lncRNA upstream 79385 83562547 ~ 83563062 (+) True LOC110494735
TU1712364 lncRNA upstream 113625 83528602 ~ 83528822 (+) True G1497947
TU1712407 lncRNA downstream 545 83702466 ~ 83702810 (+) True G1497989
TU1712576 lncRNA downstream 2298 83704219 ~ 83748099 (+) False LOC110493277
TU1712606 lncRNA downstream 46467 83748388 ~ 83748612 (+) True G1498156
TU1712615 lncRNA downstream 56339 83758260 ~ 83758572 (+) True G1498161
TU1712625 lncRNA downstream 68370 83770291 ~ 83770570 (+) True G1498171
XM_021570064.2 mRNA upstream 11590 83629188 ~ 83630857 (+) False LOC110494740
XM_021570063.2 mRNA upstream 11590 83629195 ~ 83630857 (+) True LOC110494740
XM_021570059.2 mRNA upstream 33559 83603639 ~ 83608888 (+) True irak1bp1
XM_021570058.2 mRNA upstream 46906 83592762 ~ 83595541 (+) True hesx1
XM_036950787.1 mRNA upstream 49828 83576027 ~ 83592619 (+) True LOC110494736
XM_036950798.1 mRNA downstream 2242 83704163 ~ 83809312 (+) False LOC110493277
XM_036950800.1 mRNA downstream 34576 83736497 ~ 83809312 (+) False LOC110493277
XM_036950799.1 mRNA downstream 75153 83777074 ~ 83809312 (+) False LOC110493277
XM_036950792.1 mRNA downstream 108837 83810758 ~ 83837755 (+) False LOC110494743
XM_036950791.1 mRNA downstream 108838 83810759 ~ 83837755 (+) True LOC110494743
TU1712329 other upstream 7952 83614265 ~ 83634495 (+) True G1497918
TU1710572 other upstream 1472697 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 1809346 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 2040290 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 2304284 81337017 ~ 81338163 (+) True G1495362
TU1712638 other downstream 178011 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 423916 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 794008 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 814196 84516117 ~ 84517180 (+) False G1498912
TU1713565 other downstream 825844 84527765 ~ 84554229 (+) False G1498912

Expression Profile