RNA id: XM_036950792.1


Basic Information

Item Value
RNA id XM_036950792.1
length 8229
RNA type mRNA
GC content 0.54
exon number 24
gene id LOC110494743
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83810758 ~ 83837755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGCGTCAGCGGTGGTGTTGGGGGGAGCGAGGCAATCCGTGCGTCGAAAACGTCAGTGAAGCAGCATGGCGGAGATGTGTTTGGAGTGTCTGTGCTCTGAGTGTGTGGGGAAAAAACACTCTCAGCCGATTTAACAAGAAAGATCAGTGTCTATTGCATTTTTTTTGGTCAAATAAGTGTTTATCTAAGATGGAGAGCCACAGTGGTGGCAGCGTCCCTGCATCGAAATACAGCTCAGTGAAATATTACATCCCACCCGAGACTTACGTTACACCAAGTCAAGATGGCGAGCATTCTGGTACCGAGCAAGCTGTTGGTACCGAGACTAGACCGAGAACTGGAGTGTCTTCTACGCAATATATTCCAAAGGCGGGGGACCGCTTGAACTTTCAAATACCGAGAAAGAACAAAGAAAAGAGAGccttgtttcagtatgtgtcGTCAGAGTCCCGGGAGTTTGAAGACATCTTGACCATCCTGTCATCCAACTACAGAGAAGCCAGCTCCAACGGGATGTTCATGTACACCAAGCCAAGACTGGTCCACAGTGAGCTGCTGGAGAAGGACTttgtagagaaaaggagagagctgAAGCAGGATGGGAGGACGGAGAAGGAACTGGAGGAGACCCATTGTTTCCTGATGGCTGACACCACCAAGCTGCCATGGATCTGTGAGAAGGGCCTGCTTGTGGGGCACAGCTGGATCACAGCTCTGGGGAACCCCTCCAAGGGTGTTTATCTGTCTAAAAACTCAGACCTACTGCAGATCAATCCTTTTAACCCTGGAGTCATGGGAGAGATCATCATATTCAAGGTCATCAAGggtaaaGTGAAGAGCATCTATGAGAACATGTCAAAGAACCTTCTGGACCCCACGCCCAAGTTTGACAGCCATTTCTCCAAGAACGCCAGCAAAGTGACATCTCTCACCTCCTATAGAGCGTACGAGCTTACTCAGCAATACTTCTATGAGTATGACTTTGATGAGCTGAAGTCTCGGCCGAGACACGTGTGTCCCTATGCAGTGGTCTCTTTCCAGTTCAAAGGCAAAGATGCTCCTCTTCAAGCCAAGCCCATAGCTCCCCTGAGGTCAAACAGCCAAACGTCTGAAGGAAGTACAGGCAGGAGTAAATACACAGTGTGGAGTGGAGAGCTGGTGAATGAGGGTAGAGCAGTGTCCCAGGTCTCTTTCTGCTCCTTCTCACCCCCCTTCCTGCCTTTCAAACTGCCTGAGAAGCTGGAGCTGGGTCTGGTGATGCGTATAGACCAGGTGAATCAGATGATACCCTCGGCTTTGTTCTCCTGGAACCTGTACGCAGGCAGCCACGAAgTGTTGAAGAATGGAACCTACTGCAGTCTGCTGGAGGTAGTGGACAAGAGCAAGTCAGGTGACTGTCTGGCAGCACTGCTACAAGGCCTGGAGACACAGAGACTGGTGCTTGTCCACGCGTTGGCTGACAAAGgattcctcttcctcctgtctTCAGTTCAGATGGCTGCTCCAACTGAAAGAAGAGATGGGTGGAAAAGAGGCCTTCAAGCACTCTTTGTTTTTCAAGAGTCGAGGGATGTGGCAAAATACAGTACAAATTGTCCAGCTACCCAGGAGCCTTTGCAGTCGTCATTTTCCCATGACACTGTGATGCCCCAGCTTAAAAGCTTTGTCCCGGCTCTGCATCATGCCCTGGTCAAGGTGCGCTGCAACCCGCCTGCTGACCTCTCGGCCGGGGTCGAGCACCAGGCCAGGGACTACCTAAGTGGACTTCACGATGGAAAGctCCGCCACGTTCCCATGACTGAGTACGACACCAAGCTGGATGACCGAGGGAAGCTGTTCCCGGCTCCAAAACACCACAAGCTCAACATGGAGGGCTACCTGCGCTCCTACGTCTACAGCCCTAACCTCTACACCATGCCCGTGGTCCGAGCTAAGGAGATGATGGAGAGTTACTGTGTCGTGCCTGATGACATCAGCCCTGTGACTGATTGTGAGGGTGGTAGTAGGGCCAGCGGGGACAAGCCAGTGGTAGGGTCAAAGGTCAAGCCTAATGGTCCCACTGCTGCCCAGCCTCCGGCGGTCCAGGTTAACCTCTCTCCGTTTCAGTCTCGCACTGACTCCAACCCTCAGAAGGTGAAGGAGCTGATCAACTTGATACTGAAGTGTCGGAAGAATGCAGAGGGGGAtgtgaggaagaggggagaggcgCAGGGAGGAGCGAAGGAGGGGGCAGGCCTGTTGGACCCCCGTGGGCTGAAGAGGAAGCTGGAGAGGGAGACTGCAGAGAGGACTCTGAAGTACCTGAAAAAGGCCTCACAGGAGAGGGGTGGAGTGGACAGCAGACCAGCTGAAGGGGGCCAGAACCcgtcctgtctgtcctctctgatGCTCCACAGTGTGGGTCTGAAAGACGTGGACCTGAGGAGAGACGGATCAGAGGCTGCAGTCAAGTTACTGAAAATGTTAACCAGCCTGAAGAATGCTGCAGGGCAACAGCCACAGAGTTCTGAGGGCAGAGGAGGAGGGTCAAGAGAGGGGGCGGAGCAAACGGAAGCTCTGCTGTTTGATAGGATGATCAAGCTGGGTCTGCCGCCCAATCAGGACATTGACCTGAGGAAACGACCTTCTGGGGGCCTGCAGGACAAGGCTGACTACTTGGAGgagcaggcagcaggcagtatGAGCAGTCTGGAAGGCTTCAGCCCCAGTTCCAATGGTGAAACGCCCAGGAGATCGCACTCGCACTGTCAGGGGGAGGAGCAGATTCCATGGGTCCTCATCCCCATTACAGGGCTGAAGTGGAAGAGGTACtgccagagagagaaggacaacCCTCAGGACCCGCGCTTCGTACCCCAGGTCCCCATGGCAACCAGCATCTACCCCCGCTGTGTTCCGGAGCGAAGGGAAAGAAACGTCACCCCTACCCTAGAGGAGCCCCCAGAGCCTAGCCCCAGTCCTCCCCTAGAGGAGCACCCAGAGCCTAGCCCCAGTCCTCCCCTAGAGGAGCCCCCAGAGCCCAGTCCCTGTCCCAGTCCCTACCCCAGTCCCTACCCCAGTCCCTACCCCAGTCCCTGCTCCAGTCCCTACCCCAGTCCCATAGAGGATGATGAGCAATTAGCTGAAACCCCCTGTGACCCCACAGAAATAACCAACAACGAAAAGACAACCACAGACGAGACAAACCAGAGCCTCCTTCTGGTCCCTGTTACTCCAGTGAGCACCAGCCTCCCAGAGAAAAGCAGCAGCCCCTCCCCTGAGCCAGGGCCAGCTGAAGAACCAACCCATACTAACCCCATAGAGGCTGGTCAGGAACAAGCTGAAGAACCAACCCATACTAGCCCCATAGAGGCTAGTCAGGAACAAGCTGAAGAACCAACCCATACTAACCCCATAGAGGCTGGTCAGGAACAAGCTGAAGAACCAACCCATACTAACCCCATAGAGGCTAGTCAGGAACAAGCTGAAGAACCAACCCATACTAGCCCCATAGAGGCTGGTCAGGAACAAGCTGAAGGCAGTACAGGAAAATATATACTAACTGTTGTGGCAGCTGAAGACCCAAACACAATAGAGGttgaacaggaggaggaggttaaAGAGGTAGAGGAACaggtgatggaggaggaagatgtgATAGAAGTGGTAGATGAGGAACCGGTGacggaggaagtggaggagggagatgagaaggaggaggaagacctgATGGAAGTGCTAGATGGGGTGGAAGAGCAGCTGGAGGAAGGGGAATTAGTGGAGGAAGAGAACGAACATGTGGAGACAGAGTTGAAACAGACAGGGCAGGTGTCACCCAGACcaccctcctccattcctcccatCCAGAATCCTCCTCCCATTCAAAATCCTCCTGTCCAGAGACCCGTTCTGACCAGAGTGGAAAGTATCCTGGACCAGCAGTTCAGTGACTTCTCCACAGAGATGCAGATCCTCCTGCTCAGAGAGAGTGTCCACTACAGCTCATCGCTCCTCCATACCCAGAATGCTTCACAGCAGCTCCCGGTGCATCCGCTCCTGCACTTCTCGGAGTACGTCTCCTTCTACAACTCGTCCCCTCCCATGCAGGCCTACGTCACCTCGCTCCGAGACCGCATGGGCACCATCATAAACGTACAGGACCAATGGATTCCCAGCACGTTAGCCACCCACCCTGCCCTGGTCTCATCTATCACTAACCGCCACCATGCTAACCACTCTCCTCCAACCACTACATACTGGAACCATTCTTTCTGTGGCCCTGTGTCTCAGTCTGTCCCCAGCCACCGCCTCTCTCCTGCTCCTGGCCTTAGCCTTGCTGTGTCTCAGTCTGTCCCCAGCCACCGCCTCTCTCCTGCCCCTACTCCTGGCCTTGCTGTGTCTAAGTCTGTCCCCAGCCACCACCTCTCTCCTGCCCCTACTCCTGGCCTTGCTGTGTCACAGTCTGTCCCCAGCCAGCGCCTCTCTCCTGCCCCTACTCCTGGCCTTGCTGTGTCACAGTCTGTCCCCAGCCAGCGCCTCTCTCCTGCCCCTGCTCCTGGCCTTGCTGTGTCTCAGTCTGTCCCCAGCCACCGCATCTCTCCTGCCCCTGCTCCTGGCCTTGCTGTGTCTCAGTCTGTCCCCAGCCACCGCCTCTCTCCTGGTCCTGGTCTTAGCCTTGCTGTGTCTCAGTCTGTCCCAAGTCGTCACTCTCCTGGCCTGTTTGCCCCTGGTCCTGATAGCTCAAACTCTTACAGTTCTCTACCTGTGTCTCATTTTAATAATAATAGCACAATGATTCCCTCTTCATCGTTTCCCGGCACGGCCTATTCTCCTACTCTCTACCACAACCCACCACAGACACAGATGGGACTACCGCAACTCAGCTCCAGTCTAGCCCCCCTGTCCCTCCAACCACTGGACAGTCAATGGACAACTTCAACACAGAACCCTGACTCAGGCGGGAGACTGGGAACCTGCAAGCCAAGTGATATGTCAAAAGCAAATAAttggacaacaacaacacagaacaccGACTTGGATGTCCGAGGGCTACGAGCAGAGTTCACGCCGCAAACAAGTGCCATGTTTGAAGCAAAAGACGATGTCGTAATGGTGGATCAGCCGGTTTCAGCAGCCACCGTGGCGGCCCCACCTCCTCCTCGCACTCAGATGATTGGCAGTTTGTCAGGGGCGGTCGGGCCAGTGGTAGAGCCTGCCCCAGGGCCAGGTCCCGCCTCCCCTTCAGCCATCAGTAGTCTGATCAGCCAGCTGAAGCCTGAGTTGTTCAGTaacctggtggagattataaaggATGTCCAGAAGAACTCTGTCCAGTTCTACATCCACACACAGGAGAGGGAGGTCTCCCACCACATCAAGGAGTACCTCCAGAGGTTGGGTAACGTAGAACGCAGTCCTGTGAGTttcctggagagagagaaccGGATGGACAAACTAATGGTTCTCATCCAGAACAAGGACATTGCAGCGCACATTCACAagATCCCGGCGCTGGTGCGGTTGAAGAGGCAGCCGTCGGTGATCTTCGCTGGAGTAGACAGTCTGGAAGATGTGAAGAACCACACCTACAACGAGCTGTTTGTCTCTGGGGGATTCGTTGTCTCAGACGAGTTTGTCCTCAACCCTGACTACATCACTCACGAGCGTCTGCGGGTGATTCTGATGTTCCTGGACCAACAGAACTCAGCAGAGAGCGTGTGGAGGTGGCGGGTCCACTGGAAGACCCAGAAGAAACTCAAGGAACAGTCCAGGTTTAAAAGTGAAGCCAGGAAGATCTTGAACCTGCTGACCACGTACCAGAAGAAAAACATTGTGGAGTTCCTGCCATACCATGAGTGTGACGCTCCATCTCGCCCCGCCCCCGACCTGGACTGTCTCCTCAAGCTGCAGGCACAGCACATTCAGCAACGACACATCATCTTCCTCACGGAGAGCCACTTCGAGATGTTCCCCCACTACTCCAGTACTGGCATCGTCATCGCCAACATCAACGACATCATGCACAACTTCGGTGGCCTGGTTGGTTTCCATGACATCAGAGACAAGCGGTCTACCTCAGTAGACCTCATAGCTGCAGCTACTACAGTCCGAGAGGAAAAGCATGTTCTGGAGGAACCGATCCTTCTggactccccctcctccccagatCGCCTGGTGGACCGCCTGTCCACTCCGCTGAATGAGGACgacttccatccatccctccccgaCCAGCTTGTTCCTGACGCGGGGACACCCATGGAGCTCAACTTCCAGGCCCTGAAGGAGGCCATCTCTCAGTTCAAGGCTGATAAGGCTGCTCGCTCACAGATGGCACCTCCAGAGGTGGATGGGGAGAGACCAGAGTCCCCACCAGGACCAAGGATTCCTGGCCTGGGTACAGACTCACCAGGGTGTCTAGGGGACTCTGGAGTTGGTTTCCTCACCCCTGGTCTCCTCACTCCTAGTTTCACcccttcccctgtctctctccttggtcCTGTCCCTCTCCGCTCCAGCCAGTCCCCTGCTGGGATCCAGAAGGAAGTGGGACTGACCCCCACATGGCAGGCTAAAGAAGCTACCCTCTCCTCACTCCACTCTAAGCTCGGTCTGAGTGTAACAGCTGGTGCCGAGGTTACCAGTGACATGTCTTTGTGTGGCTCCCAGGGCAGACTGAACGCTTTCAGCAGCCACCGGGATCCTTTAGCTGGCATTGTCACTGAGGGCCATGGGGAGTCGGGGGCCACACCCAGCAACACTAACGACCCCCCAGGCCCTGAGCCTCCAAGGTCCCATGGGGAGAACACTAAACTCAGCCTCCAGGGGGGAGGAGGAATGACTGACAAAGCCCCTAGCAGCCCCCTCCCTGGTCCTCCAGGTCCCAGGGCAGCAGCCCCCCGGCCAGTTGGTGGTGGGGATTACATAGCGGCAGCGACAGACAGACTGGCACAGGCAGCCAGACAGCAGCAGAGAAACGGCTTGTTACCCATGCCTAATACACTGTTCCTTAACAGTAACCTCAATCTGCACAACCATGGCATGAGCATATTCCAAAGGCCCATGTTGAATAGGCTGGAAGGACCTGCAGGACGGGGGGGTATTAGACCATTGATGCCTAATGCCATTGGCTGGGCTAGGATGGGCCAGGCAGGGGGGTCAGAGTCCTGTCTATGGGGCCTTCAGCAGCAGAACATGGGGCTGGGGCGCCACACATTCCCTCCACGACTGATGGGGAACCCTCATCACCCCTGGGGTAGTAACCAGACTGCTAACCAGGGGCGTGGGAATGGCCCTTGGAAGCGGTGACGAACGGCCGAGTGAACAAGAGTTGTGTTCCGCAGGTATCAACCTGAAAACACTGAGGATATACCGGGACGTccatttttgttttctgttgtgcCCCAATGGATAGAGAGCAACTAGCACGACTACCTACTTGACCGATAGTCAAATCTGTTCTACACATTGCATTTCTTACTGAACCCTCCTGTCCCAAACAGGCCCCACTAGTGTATCTTAATTAATGATCCTAAAGAAGCGCTTTACTTGACAGGAAATAACTTTTTTTCCCTTCCAGATGGTGCTGCCTGCTGATGATACTACTCACTAACCTGTCAGATCTTGTCAAACCAAACAATTATATTTGTATTTTCTAGGAAAACTTTTTGTTATTACTTGTTTGTTTAGGGGCTGTATTCAATCAGATCCCCTTTAGCCGACATCTGCGTAGCGGTTGTTTCGGCGGTAGAACAgcagagctgtcaaatccactaGCAGCTCCTGGCATTATACCCAGTGGACATTGTCTGAACGGTGTTgcattaagagaaatcccatTATAAGTTTGAACAGTGGAATGTGAGATGTagtctacacctccattaggagaTAGAAACCCTCAATATTAAGTTTCAGGATTGTTCAATTAGAGCGtgattatttctatatagcccaCACTTCCTCATTCTGAACATCTAATGGGAGAGGGCCGGGTGTGGCTGAGTGACAATTAtcgcaagagcagctgctcaccgatttgatGCCTCAGTTCGACCTTCAACACCACTAAACCATCCACTATGCtacgcttgatctgattgaatctaggcctaagTTAATATCCTTGTACCTTTTTTGGTTTTGTAAAGAAGTATACTGTAGCCATTTGGCCTTGTACAGAAAACCAGTGGTTTTTATCTTAAtgttattttttacaactttgttTGTATTAAAACATGCTTGTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1712575 lncRNA upstream 1451 83805918 ~ 83809307 (+) True LOC110493277
TU1712666 lncRNA upstream 5047 83805407 ~ 83805711 (+) True G1498203
TU1712578 lncRNA upstream 5543 83804931 ~ 83805215 (+) False LOC110493277
TU1712626 lncRNA upstream 38372 83771757 ~ 83772386 (+) True G1498172
TU1712625 lncRNA upstream 40188 83770291 ~ 83770570 (+) True G1498171
TU1712647 lncRNA downstream 173 83837928 ~ 83839104 (+) True G1498185
TU1712678 lncRNA downstream 6285 83844040 ~ 83844970 (+) True G1498215
TU1712698 lncRNA downstream 77148 83914903 ~ 83915105 (+) True G1498233
TU1712703 lncRNA downstream 81635 83919390 ~ 83919689 (+) True G1498238
TU1712713 lncRNA downstream 97141 83934896 ~ 83935104 (+) True G1498246
XM_036950798.1 mRNA upstream 1446 83704163 ~ 83809312 (+) False LOC110493277
XM_036950800.1 mRNA upstream 1446 83736497 ~ 83809312 (+) False LOC110493277
XM_036950799.1 mRNA upstream 1446 83777074 ~ 83809312 (+) False LOC110493277
XM_036950790.1 mRNA upstream 108835 83642664 ~ 83701923 (+) False LOC110494741
XM_036950788.1 mRNA upstream 108836 83642445 ~ 83701922 (+) False LOC110494741
XM_021570072.2 mRNA downstream 12710 83850465 ~ 83860051 (+) False LOC110494746
XM_021570073.2 mRNA downstream 12710 83850465 ~ 83860051 (+) False LOC110494746
XM_021570077.2 mRNA downstream 12710 83850465 ~ 83860051 (+) False LOC110494746
XM_021570078.2 mRNA downstream 12710 83850465 ~ 83860051 (+) False LOC110494746
XM_021570074.2 mRNA downstream 14361 83852116 ~ 83860051 (+) True LOC110494746
TU1712329 other upstream 176263 83614265 ~ 83634495 (+) True G1497918
TU1710572 other upstream 1641008 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 1977657 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 2208601 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 2472595 81337017 ~ 81338163 (+) True G1495362
TU1712638 other downstream 42177 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 288082 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 658174 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 678362 84516117 ~ 84517180 (+) False G1498912
TU1713565 other downstream 690010 84527765 ~ 84554229 (+) False G1498912

Expression Profile