RNA id: XM_021570071.2


Basic Information

Item Value
RNA id XM_021570071.2
length 4356
RNA type mRNA
GC content 0.50
exon number 19
gene id ccdc66
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83837851 ~ 83860046 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGCACAGGGGTTTACCACCGTAATGTCGGAAACGTAAAGTTAACCTATTTAGCAAGACGTATTCTGATTCGCTGCTCAATACAAACCTGTGAGTGATAAGCCAATCATTTATGTTCTCATTGGTCGTTGACAGCAACCAACATACACAATCAGAGATATTAGAAAAGGATCTCTGACACAATAAACATATCGAGAGGTATCAATGTTTAGCTAGGAGTTTAGGGAAACTGGACAATTATTACCTAGCAATGTTTCTCACCAAATAACTTTGCTAACCAAGATTTATGTATATCGTTCAGCCAGTTCAATGACAACTGTTAGCTAAAATGAATCTGGGGGATGGTCTGATGTTCGAACTTGAAAATGGAAAGCCCAGGCTAATTCTAACCAATCATCATGGTGTTGATACGAAGAATCCAAATAAGACCACAAAATGCTCTCAACTCAAAGAAGTTTCCCGAACCAGTATCCGAGGAGCCTCTGAGAGTACAGAAGAAACGTGCAGAGAGGAGGAAGGCAGTCCCTATTACCCACACTGTGCCAGTCAAGAATGACACTCCAATGGTTGCATCCAATCATACAAAACCAAAGGCCAAGGGCAGCACTGACCACAATACCAAAGCCTTGGCCAAAGTGTCTTCAGCTAAAGGACATGGGCAGATAGCCACCGATAGACCTCCAAAGTCCACTGTGAAGGACAGTTTGGTCTGTTTGACCAATGAGCAGCTCCAACAGATCCTCAGCACAATCAACAACTCAACCATTCGCTCACAGGATCAGGATGTACACAGCCAGCCTCAAACAGGAAATGAAGGGAACTCTAAAGAGGATTGCCTGTTGAATGGAACGGGGAGAAAAGAAAGTGCTGCACATGTTAGTGGGAATGGAAACTCACAGGGAAAAAGCGAGGATGAAAGGTGGGTGATTTGTGGTCAACCATCTGGCCTGTTCAGTTctctgggagaaagagagatggacaaAGAAGCACTGGAGGCCAAGAGGACACAATGGAGGAAAGAACTAGATGAACAGATGGCTCTGAAGAAACAGCAGAACGACCTGAGCAGACCAGATGTCACGGCAGACCATGGCCCAAGGGGAAGGGTGACCATCACATCCAAACCTGGTCCTGGAGATGGTCACATACACACCAGGATGCTAGGAGGACCCGGTCTGgaggacacagacacactgtgCTCCACTCAGAGCTACAGCAGTCACAGAGACCTCCCTTCTGCCATCAGATCTGCCTTCGTAGTGGGGGAGGCCACCCCAGTAGAACATGCCTTCAGCGCTCAGAAGAAGGAGCATCATAGGAGGTGGCTGCAGGATCTGGACcggcagagggaggaggacaagCTGCGACACCGGCAGGAGAAACAGTATCTTAGCCAAgctGAGGACCATGAGCGCTGGGCCATGCACTTTGACTCCCCCCAGATGAGAGTCCCTCTCCAGGCCCCCGTGGCTGCAGAGAGGGGCGAGTCAGAGCCCCTCAGTCAACAGAGGACCCATTTTGGAGCCCTTTCTGTGGCCTGGGACGGAGCCAGCACCTACGGAGGGGACAGTCTTGGGAGAGCCAGTGTCGACATCACTGGAGGCTTCCCACAGAAGGCAAGCCATCTCCGTACCATGACGGCCCTACTGGACCCAGCCCAgatcgaggagagagagaggaagagagtgaaacAGCTTGAGCATCAGCGTGCCATCGAGGctcaggtggaggagaggaggaggcagcgtGAGGCGGAGGAGGCCGTTCGCCTGGctgtggagcaggaggaggagaggagggtggcgCAGGAGAGAGAGCTGCTACAGAAACAGTACCAGCTCGACACTCAGAGAAAGAGGCACACAGAGGAGCAGCACAGTCGTAAGCAGGAGGAGCTTTACCTGAGTGTTCAGCGGGCCCAGGAGGAGGCCCTGAAGGACAAGCACCAGCAGAGGATCAGAGAGCTGGCCAGGAAGGGACACGACGTCTCCAAGCTGCAACTCTCTCTGGAGGGGGAACCTGTCTCCTCACGGGTCTTTAACACCAGCTCAGGACCATACCACTACCAGACAGGGACAGGAAGGGAGATGGACACCCTGAGAGAAGAGACTTGCAGCACCGCCTCCCTTAGGAAGGACATGGCAGTGAAGACTGAGGTGAACCCAGCAGTAAGGCCAGGCTGCACGTACACAGTGGAGGCTCTAGGTAATCGAAGCCAGGCGGTGCAAACCCCAGACATCCCTGTAGAGTACAGACCTCCTCCTCCCAACGCCAAGAGGTGCAGGCGGGAGGCCAGGCAGGAAGCACAGCTGGCTCAGAGGAACCCTCCTGGCCCCAGGGCGGGGAAGGAGAACATTTGGCTGAACGACctgggaggaggagtaggaggtgGTGCAGGAGACCTGTACGAGGCCTTTGCCCGGACAGACCAAGGCCAGGGCCAGAGACACAGGGGAGGAGGTCGTAGGCCAGAGTGGAACACTCAGAGACCCAGTAAACCCTATGTCCCGGCATCAGAGCGCTACCCTGCAGGGCTACAACACACCAGGCAGGAGAGCCGCCTCCGCAGGCAGATGGAACTCATGACCATGATGGAGAGGAACACCATAACCCCTCACCCCCCTGACCCCGAACCTGACCTCAGGCCTGCTGACCCCTCGCCACCACAAGCCAACTACCCTGCTAGCACTGCACAGGGCAGGATAAAGAATGGCATCACAGGTGTGACACACGCCATGGCTGTTCACAGTGGAAGAGTTCCCCCCAGATCCCCTCCAGTTCCTGCTATCAAACACCGCCTTCAGAACCAGTCCCGAGGCTCCCGCCTCCCTACACAGGCCCATGGTTCGCTCCAGGACACAGACCGCTCCCCTCCCCCCTCGGAGTACATCCCCTATCTGAGGACCGACGAGGTGTACCACATGGATCCCCGTGCCCCCATCTCCAGACCCTCCACacatccacagacacacacagATGGGGTCCAGTGCAGGCCCATTAGCCCTCCCCACCAGAAGGACCCTCTGCTCCACCCAGAGCTGCttaggaacacagagagacagcaggcCATACTGAAGAGCCTCTCAAAGCTACGGCAGGGTTTGTTGCAGAAGCAGAAAGAGCTGGAGACAGGACTGAACCCTGTAATGATTGTTACTGAGGACCACCACTGACCTCCTCAACACGTGACCCACAGCCTCACGTCTAAAGGCACATAGACCTAGTAAACACTCAGGTTGTACAACGGTTTGTGATAGCATTGTTGTGTTGAATGTGCTGTATCACCGCAGTGTGCACTAGGTTATTCTGAACTGGAACATACAGCACTTTACCATTTATGATTGAACCGACATCTTAGTTTGTGAAGAGTATTTAAATTTTAAGCAAATGTTGGCACTTTACTGACCACATGGGTTTGAAGAGTATTGTAGGTATTATATAGAATGTAATGGCCTGTGTGTGAGTGGCTATGATCTTAGTGTTGGTATTTGTGATCACTTGAAATGTAGTGGTGCTTTTGCAGCCATAGAATAGAGTAcgacagtatgagtcataatacccataaagcTTAGCGgtccataggggattttagaaacagttcaaaagggctgtgtttcgtgtagtcttaccctggcatgacgttttgataaTCATGTAAAACTCTCGGACAAGGATTATCAATATATtctcctgtatttaccccccaaaatgaaatgctaattagctgccaTAAGAGTACAAATGCCATGGTGATCTGGACCAGACTGCCGAATTTAAGAATCTTTGGATTaactgttagctaaatgtagtaatgaataaattggctacatttggacaattctgtgaactgtcttgagTTGACAATACCGGTTAGCAAAAGTGTGAGctagatgacgtgcaggagcttaGGAATATATTGAATCACatgatatgatgatgatgatgattaggggggggggggggggggggggtaaatgtaTAAGACCCTGTAACTGGTAATATGTTCCAAGTCAGAGCGATTTGTCTACATTGATACTAACTAGTATTGTTTTTGAAGTCCCCTTGTCCAAGAGAGATTTACAGTTAAACGTCATGCCAGGGTAAACctgcacgaaacacagcccttattttaagtgtttctaaaatcccctatgggggAAAAAAGAacggtggaaaaacgattggaaccactttcttgtttgaccgctaggttttatgggtattctGACACTTCCAGTCTAGGGCTCTGTTACTAGTTTATTTACAAGCTTTGAAGGGACTTTCATCTAATGACCATGTGTATAAATTGTTATTTAAAATGTACTGTGTTGTGTgaataaaagttttttttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1712905 lncRNA downstream 8971 83828674 ~ 83828880 (-) True G1498364
TU1712903 lncRNA downstream 9999 83827560 ~ 83827852 (-) True G1498363
TU1712817 lncRNA downstream 28551 83807498 ~ 83809300 (-) True G1498341
TU1712812 lncRNA downstream 33722 83803876 ~ 83804129 (-) True G1498339
TU1712803 lncRNA downstream 51215 83785130 ~ 83786636 (-) True G1498330
TU1712881 lncRNA upstream 2097 83851273 ~ 83860046 (-) True ccdc66
TU1712949 lncRNA upstream 70232 83919408 ~ 83919756 (-) True G1498397
TU1712957 lncRNA upstream 88888 83938064 ~ 83938373 (-) True G1498404
TU1712960 lncRNA upstream 94918 83944094 ~ 83944311 (-) True G1498407
TU1712968 lncRNA upstream 104036 83953212 ~ 83953427 (-) True G1498415
XM_021570061.2 mRNA downstream 208787 83608842 ~ 83629064 (-) True si:dkey-261l7.2
XM_021570060.2 mRNA downstream 208798 83608842 ~ 83629053 (-) False si:dkey-261l7.2
XM_021570052.2 mRNA downstream 284131 83532512 ~ 83553720 (-) True LOC110494733
XM_021570050.2 mRNA downstream 429136 83397640 ~ 83408715 (-) True LOC110494731
XM_036948439.1 mRNA downstream 442969 83388660 ~ 83394882 (-) True LOC110494730
XM_036950803.1 mRNA upstream 183189 84032365 ~ 84046060 (-) False LOC110494754
XM_036950802.1 mRNA upstream 183189 84032365 ~ 84046495 (-) False LOC110494754
XM_021570084.2 mRNA upstream 183189 84032365 ~ 84046538 (-) True LOC110494754
XM_036948440.1 mRNA upstream 841609 84690785 ~ 84713397 (-) True LOC110493281
XM_021570090.2 mRNA upstream 877334 84726510 ~ 84730729 (-) False LOC110494760
TU1712523 other downstream 232098 83605243 ~ 83605753 (-) True G1498077
TU1711213 other downstream 1176213 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 1591864 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 1597587 82235128 ~ 82240264 (-) False G1496689
TU1710627 other downstream 1662999 82172469 ~ 82174852 (-) True G1496390
TU1712995 other upstream 133165 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 201834 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 1371949 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 1437480 85286656 ~ 85288117 (-) False G1499684
TU1714522 other upstream 1437480 85286656 ~ 85288117 (-) True G1499684

Expression Profile