RNA id: TU1712881


Basic Information

Item Value
RNA id TU1712881
length 2543
lncRNA type read_through
GC content 0.46
exon number 4
gene id ccdc66
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83837851 ~ 83860046 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACAGTACAaaatattttattgtgttatccTCTGGCAGCTACAATACACAATACTTTTTAACCAAAACATAAAGAAATGAATCAATCTGTAACTGTGAGACTAACACATTTTTGGGACCAGTCAGCAGTCTCATAACAATTTGGGACAGACAAGTTGACCACATGCTGTCGACTCCTCTTTGTGAAAATGACAGACTGACTCTCCAACATTCCAACATTCCACAGTACATTCCAAAGTCCATTAGCGATGTTTTCAAACTGCTAATTCACAATGTATTTAAACAAGAGAAGTGACTTTAGAGGCATTTCTTTGTCTTCTAAAAAGGTGGCAGAACAGGCCACTTTTCCAACTTCTAAGGCAGGTTGTGGGTTCTCCCTTCAGTAAATGTTCACATGTGTTGTGAGGGGGATCTAAGCTATGGTGTCTCTCCATTGGACCAGCATTTTAGAGATCCTACTCCGACAAAGCCTTTTCTGCACTCTGTGGACTCTGTGGTCTCTCTGCACTCTGTGGTCTCTCTGCACTCTGTGGTCTCTCTGCATTCTCTGGACTCTGTGGTCTCTCTGCACTCTCTGGACGCTCTACTGCGTGAGCCATTTTGTGAGTTTTCATGTGAGTCTTGCGGGATGAGGACTGACTGAAGCATCTGCCACAGACGTTGCAGCGAtacggtttctctccagtgtgagttAGTAGGTGACATTTTAAAGCACCTAACAATCTAAAGCATTTTCCACACTCTCTGCACTTatacggtttctctcctgtgtgagtcctcATGTGCCCTTTAAGAGTATTCTTCTCCCTGAAGCACATGCCACAATCTTCACACTGAaacggtttctctccagtgtgagttAACTGGTGGAGTTTAACTTGTCTTTCTCCCGAGAAGCCTTTTCTGCACAAATGGCATTTATATGGCTTATCTCGTCCCTCTATGTGAAAGGACGTATGATGCTCTTTAAGGGCCTTGCCATGTCTGAAGGTTTTGCCACACACTTCGCACAGATGTGGCTTCTCCACATAGTGATAAATACTTATATGATATTTCAGCTCAGAATTCTTAGGGAAACATTTGCCACAAATATGACAAAACGTTTTCATTAGACTGTGAGTTTGCAGGTGAACCGCCATGTTCTCTGCAGGCCCAAGGACCTTCCCACACAAACCACACAAACGGTTTCGCTCCGCTAAGTGCATCTGAACATGTCTTATCAAATGACGCGTGAAGTCAAATGATTGCCCACACACCTGGCAAGAACAAGGAACGTTGTAGTTGTGCAACGTAGTGCTTTCCACACCTTTGACTTCCTCACTTTGAGCTGCAGGGCTTTGCACATAGGGAAGTGTAAATATCATCAGGGGGGCATTCTGTTTAGACAACATAACAGTTTGGTTCTGTGATGTTTGGAAGGGTTGGGCCAGGAGAAAGGTTGTGGGGAAGGGCTGGGGTTTGGGCTGAGGCTTGGGCTGGGCCTGAtgttggggctgaggctgggcctgatgttggggctgaggctgggcctgatgttggggttggggctgaggctggggtttgGGCAGAGGTTTGGGCTTGGCCTGGCATTTGGATGGGCCCTGACCATGGTTTTTGCTCCGAAAGAGAGGAGTGCATGTGACTGTTGTGGACTCTGTCGTTCCAGAGTCTGGAAGCTGCTCTTCCCCCAGACTGGTCCTTGGTTCCTGCTGCTTCTCAGTCGCTGTAGGCTCTGGGTCCTCCTGCTCCATTAAGGCAAGGGTATTAAAGGTGACAACACGTGTTTACCTGGCTTAGCTTCGAAGAAGCAGCATCATCATCGCCAGACTGTGGATCCTGCTCCATATCTTCTTCCAGGTATACTGAGATTTCTGCAGGCTCAGGTTTGATGTTATCGTTGTGGGGATGTGGCGTGGCTTCTTCGCCTGTGTTCTCGCTCTTTGGCACAACTACTAACTTTACGGTCAAATCTCGCGGGGTAACCTTACACGCGTCTGTCATTCTCTCGTGGGGAAAGGGGGTGATACTAATCTCACCTTGTTGGGAGTCCCGAGTTCGCCATGCAAGAGAGTGACTCTCCCTCTGCTTCTGAGCACTTTCTCGAAATATACTGCCAATTTTCTCCACATCGCAAAAGCTTTTGTAGTACCTTTTAAGAAGTTTACGACACGTTTCGCAAATGATCTGTGGTAAGGCATCGTCCTGAGAAATTGGTCCAGTGAGGTCCTCCAATGCTGTGGTGTAGTCAAATGGTTTCAAACATTGACCTTCGAACTGACTGAAGAGATTGTGCACGTATATTCTATTGGAAATGTTTTCCCCACAAGCACGACATACACCGACACAACAGGTTCTCTTTGGTCTCATCATGCTAGCTAGTATTAGCATATATTAGCGTCACAGAACAGTATCTTTGCTAGCATGGTCCAGAAGTTTTTTTTTTCCCGTTTGTTGTTACATTTTCATGTGTCATCCGAATTAGTCCCCTCCTCATTCGCGTGATTGGGAAACAAAAATGTACACGTTACTCAGGTGTGCTCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1712905 lncRNA downstream 22393 83828674 ~ 83828880 (-) True G1498364
TU1712903 lncRNA downstream 23421 83827560 ~ 83827852 (-) True G1498363
TU1712817 lncRNA downstream 41973 83807498 ~ 83809300 (-) True G1498341
TU1712812 lncRNA downstream 47144 83803876 ~ 83804129 (-) True G1498339
TU1712803 lncRNA downstream 64637 83785130 ~ 83786636 (-) True G1498330
TU1712949 lncRNA upstream 59362 83919408 ~ 83919756 (-) True G1498397
TU1712957 lncRNA upstream 78018 83938064 ~ 83938373 (-) True G1498404
TU1712960 lncRNA upstream 84048 83944094 ~ 83944311 (-) True G1498407
TU1712968 lncRNA upstream 93166 83953212 ~ 83953427 (-) True G1498415
TU1712972 lncRNA upstream 96504 83956550 ~ 83956836 (-) True G1498419
XM_021570071.2 mRNA downstream 2097 83837851 ~ 83849176 (-) False ccdc66
XM_036950794.1 mRNA downstream 2097 83837851 ~ 83849176 (-) False ccdc66
XM_021570069.2 mRNA downstream 2098 83837851 ~ 83849175 (-) False ccdc66
XM_021570068.2 mRNA downstream 2099 83837851 ~ 83849174 (-) False ccdc66
XM_021570061.2 mRNA downstream 222209 83608842 ~ 83629064 (-) True si:dkey-261l7.2
XM_036950803.1 mRNA upstream 172319 84032365 ~ 84046060 (-) False LOC110494754
XM_036950802.1 mRNA upstream 172319 84032365 ~ 84046495 (-) False LOC110494754
XM_021570084.2 mRNA upstream 172319 84032365 ~ 84046538 (-) True LOC110494754
XM_036948440.1 mRNA upstream 830739 84690785 ~ 84713397 (-) True LOC110493281
XM_021570090.2 mRNA upstream 866464 84726510 ~ 84730729 (-) False LOC110494760
TU1712523 other downstream 245520 83605243 ~ 83605753 (-) True G1498077
TU1711213 other downstream 1189635 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 1605286 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 1611009 82235128 ~ 82240264 (-) False G1496689
TU1710627 other downstream 1676421 82172469 ~ 82174852 (-) True G1496390
TU1712995 other upstream 122295 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 190964 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 1361079 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 1426610 85286656 ~ 85288117 (-) False G1499684
TU1714522 other upstream 1426610 85286656 ~ 85288117 (-) True G1499684

Expression Profile