RNA id: XM_021570072.2


Basic Information

Item Value
RNA id XM_021570072.2
length 4087
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110494746
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83850465 ~ 83860051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTaccttgtcaatataatagataatCTGACGGGACTCCCTACAAAAAACACGTCACTTCGACAGTTATGGCTAGCAGGGATTCAGTTTTTGTCAGAATTTACTTTTCCTATTAGGTTTAGAACGCATGCAGCAAATTAGGAGAATAAATGTGGCAGATTAGGATAATTAGGTTTCGGATTAGCTAAAATGTGAAAACCCACTTTGAATACAGCTACGACTGGAaatgacttttcgtagcaggttagggaaGTATTTTCGCTAACTTAAACCTAATTCGCATAGCATGCTACGTTActtatcctaacctgctgtgtaaatGCTCATAACCTACTAGGTTAAAGTCACTTCCGGAAGTGCCATGTTTTTTTAAGGAATCTCGATGGTGTACACATACAGCTACAGACATAAATtactttttcgtagcaggttaggagaacttccGTACCATGTTTGGATAATTAGGCTCGCGAAAATGCTCTTCTAACCTGCTACAAAATGTCCCTTCCGGTCGTAGCGATAGACAAAAGTGGGTCATGtctagaagggatccagcttttgtcaaatttacTTCAAACGTATATTTTTTTTGTGGCATTTTACCTAATCTTAACCTGCCACAATTATTATCATAACCTGCTACGTATGTTCTCCTAAGTGAATGAACGTAGCAGTTGAGGAAAATtaggttagggaaagggttagctaaaattcTATCATAACCTGCTACAAAAAGTAACTTCCGTCCATAGCTGCATTCTATCTAGTAACAACTGCAAACTCCGCTTTCGTTGCAGTACGATGGTGAAACGAGCACACCTGAGTAACGTGTACATTTTTGTTTCCCAATCACGCGAATGAGGAGGGGACTAATTCGGATGACACATGAAAATGTAACAACAAACGGGAAAAAAAAAACTTCTGGACCATGCTAGCAAAGATACTGTTCTGTGACGCTAATATATGCTAATACTAGCTAGCATGATGAGACCAAAGAGAACCTGTTGTGTCGGTGTATGTCGTGCTTGTGGGGAAAACATTTCCAATAGAATATACGTGCACAATCTCTTCAGTCAGTTCGAAGGTCAATGTTTGAAACCATTTGACTACACCACAGCATTGGAGGACCTCACTGGACCAATTTCTCAGGACGATGCCTTACCACAGATCATTTGCGAAACGTGTCGTAAACTTCTTAAAAGGTACTACAAAAGCTTTTGCGATGTGGAGAAAATTGGCAGTATATTTCGAGAAAGTGCTCAGAAGCAGAGGGAGAGTCACTCTCTTGCATGGCGAACTCGGGACTCCCAACAAGGTGAGATTAGTATCACCCCCTTTCCCCACGAGAGAATGACAGACGCGTGTAAGGTTACCCCGCGAGATTTGACCGTAAAGTTAGTAGTTGTGCCAAAGAGCGAGAACACAGGCGAAGAAGCCACGCCACATCCCCACAACGATAACATCAAACCTGAGCCTGCAGAAATCTCAGTATACCTGGAAGAAGATATGGAGCAGGATCCACAGTCTGGCGATGATGATGCTGCTTCTTCGAAGCTAAGCCAGGTGAGTGTGCCAACAAAATACATCCTTACTGGACCCATGGAGAAACTTGTGGATAACATGTTGAATGGACAATTCTTCAGCGCAGCAAAGGCAATAATGGAAATTCCTGATTTGGCTTCCCTTGTCACTAAAGAGGTTTTGAATCAAGTCGTCAAAGAATGCAAAGAGCTCACTAGCGTTCCATTCAACTCCATACTAAGACAGACCAGTCCATCCTCTTTGGAAGCCTTCAGATGGGACACTGTTTTTACTGAATGGAAGACAACTGCACCCACGTTCCTTGGGTTTCTGGAGTCCGCGAGCACATCTACATGGGTTTCTGCCCTGACCAAAGAACGTACACAGAGAAAGAACTTCGCCATAGGCATGGCTGGAGCCACTCTTCTCAAGGTACGTTGCGGCAGGATGAGTGCACCCATGTATCGGAACTCGCTTATCATGCACCAGGCTCAGAAGAAAAAGTGCTTCAATAGGTTTGCCAGACTTGGTGTCTGTGTTACAAAGCAAAGCATGCTTCATCTGTTGAGAAGAGTGAGGGCATCTGAAGAAGTAACCAGGACTCCCTCTGCAGGTGAAGACCACAACTACGACTCAGTAGCGCCAAGAAGATCCACAGAAAATACTGACAGACAGCAGGAGGACCCAGAGCCTACAGCGACTGAGAAGCAGCAGGAACCAAGGACCAGTCTGGGGGAAGAGCAGCTTCCAGACTCTGGAACGACAGAGTCCACAACAGTCACATGCACTCCTCTCTTTCGGAGCAAAAACCATGGTCAGGGCCCATCCAAATGCCAGGCCAAGCCCAAACCTCTGCCcaaaccccagcctcagccccaacatcaggcccagcctcagccccaacatcaggcccagcctcagccccaacatcaggcccagcctcagccccaacatcaggcccagcctcagccccaacaTCAGGCCCAGCCCAAGCCTCAGCCCAAACCCCAGCCCTTCCCCACAACCTTTCTCCTGGCCCAACCCTTCCAAACATCACAGAACCAAACTGTTATGTTGTCTAAACAGAATGCCCCCCTGATGATATTTACACTTCCCTATGTGCAAAGCCCTGCAGCTCAAAGTGAGGAAGTCAAAGGTGTGGAAAGCACTACGTTGCACAACTACAACGTTCCTTGTTCTTGCCAGGTGTGTGGGCAATCATTTGACTTCACGCGTCATTTGATAAGACATGTTCAGATGCACTTAGCGGAGCGAAACCGTTTGTGTGGTTTGTGTGGGAAGGTCCTTGGGCCTGCAGAGAACATGGCGGTTCACCTGCAAACTCACAGTCTAATGAAAACGTTTTGTCATATTTGTGGCAAATGTTTCCCTAAGAATTCTGAGCTGAAATATCATATAAGTATTTATCACTATGTGGAGAAGCCACATCTGTGCGAAGTGTGTGGCAAAACCTTCAGACATGGCAAGGCCCTTAAAGAGCATCATACGTCCTTTCACATAGAGGGACGAGATAAGCCATATAAATGCCATTTGTGCAGAAAAGGCTTCTCGGGAGAAAGACAAGTTAAACTCCACCAGTTaactcacactggagagaaaccgttTCAGTGTGAAGATTGTGGCATGTGCTTCAGGGAGAAGAATACTCTTAAAGGGCACATgaggactcacacaggagagaaaccgtatAAGTGCAGAGAGTGTGGAAAATGCTTTAGATTGTTAGGTGCTTTAAAATGTCACCTACTaactcacactggagagaaaccgtaTCGCTGCAACGTCTGTGGCAGATGCTTCAGTCAGTCCTCATCCCGCAAGACTCACATGAAAACTCACAAAATGGCTCACGCAGTAGAGCGTCCAGAGAGTGCAGAGAGACCACAGAGTCCAGAGAATGCAGAGAGACCACAGAGTGCAGAGAGACCACAGAGTCCACAGAGTGCAGAGAGACCACAGAGTCCACAGAGTGCAGAGAGACCACAGAGTCCACAGAGTGCAGAGAGACCACAGAGTGCAGAGAGACCACAGAGTGCAGAGAGACCACAGAGTCCACAGAGTGCAGAAAAGGCTTTGTCGGAGTAGGATCTCTAAAATGCTGGTCCAATGGAGAGACACCATAGCTTAGATCCCCCTCACAACACATGTGAACATTTACTGAAGGGAGAACCCACAACCTGCCTTAGAAGTTGGAAAAGTGGCCTGTTCTGCCACCTTTTTAGAAGACAAAGAAATGCCTCTAAAGTCACTTCTCTTGTTTAAATACATTGTGAATTAGCAGTTTGAAAACATCGCTAATGGACTTTGGAATGTACTGTGGAATGTTGGAATGTTGGAGAGTCAGTCTGTCATTTTCACAAAGAGGAGTCGACAGCATGTGGTCAACTTGTCTGTCCCAAATTGTTATGAGACTGCTGACTGGTCCCAAAAATGTGTTAGTCTCACAGTTACAGATTGATTCATTTCTTTATGTTTTGGTTAAAAAGTATTGTGTATTGTAGCTGCCAGAggataacacaataaaatatttTGTACTGTTTTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1712678 lncRNA upstream 5495 83844040 ~ 83844970 (+) True G1498215
TU1712647 lncRNA upstream 11361 83837928 ~ 83839104 (+) True G1498185
TU1712675 lncRNA upstream 21990 83828236 ~ 83828475 (+) True G1498212
TU1712575 lncRNA upstream 41158 83805918 ~ 83809307 (+) True LOC110493277
TU1712666 lncRNA upstream 44754 83805407 ~ 83805711 (+) True G1498203
TU1712698 lncRNA downstream 54852 83914903 ~ 83915105 (+) True G1498233
TU1712703 lncRNA downstream 59339 83919390 ~ 83919689 (+) True G1498238
TU1712713 lncRNA downstream 74845 83934896 ~ 83935104 (+) True G1498246
TU1712714 lncRNA downstream 76176 83936227 ~ 83936427 (+) True G1498247
TU1712718 lncRNA downstream 82188 83942239 ~ 83942540 (+) True G1498251
XM_036950792.1 mRNA upstream 12710 83810758 ~ 83837755 (+) False LOC110494743
XM_036950791.1 mRNA upstream 12710 83810759 ~ 83837755 (+) True LOC110494743
XM_036950798.1 mRNA upstream 41153 83704163 ~ 83809312 (+) False LOC110493277
XM_036950800.1 mRNA upstream 41153 83736497 ~ 83809312 (+) False LOC110493277
XM_036950799.1 mRNA upstream 41153 83777074 ~ 83809312 (+) False LOC110493277
XM_021570079.2 mRNA downstream 3767 83863818 ~ 83868195 (+) True LOC110494747
XM_036950797.1 mRNA downstream 19754 83879805 ~ 83888415 (+) False LOC110494749
XM_036950796.1 mRNA downstream 19755 83879806 ~ 83890067 (+) False LOC110494749
XM_021570081.2 mRNA downstream 30272 83890323 ~ 83892616 (+) True LOC110494750
XM_021570082.2 mRNA downstream 43870 83903921 ~ 83906399 (+) True LOC110494751
TU1712329 other upstream 215970 83614265 ~ 83634495 (+) True G1497918
TU1710572 other upstream 1680715 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 2017364 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 2248308 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 2512302 81337017 ~ 81338163 (+) True G1495362
TU1712638 other downstream 19881 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 265786 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 635878 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 656066 84516117 ~ 84517180 (+) False G1498912
TU1713565 other downstream 667714 84527765 ~ 84554229 (+) False G1498912

Expression Profile