RNA id: XM_021570082.2


Basic Information

Item Value
RNA id XM_021570082.2
length 2231
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110494751
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83903921 ~ 83906399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTAGCGCGCTGACATCACTTCCGTGCAGTACAGCGTTCATGTTTGACAACAAATTCTACGTGGATTTCGGGAAGATCTTTTGCCAGCTTTAAATCGTCCAACGATGACTAAATTACAATATCTGAATGTGTATCTGACTGAGCGTCTCATGCAAGCTGCTGAGGAAATACTAAGAGTTGTCGCAGACACAATCTCCGAGTACCAGGAAGAAATATCCCGGACAAAGCGAGAGAACCAATACCTTAAACGACACTTGATCACACCGGTCCTACCGCCGGCCCCTCAGCCCATTCTCTCTTGGGTCTCAGAGCCGCGAACTCCCCCTGAACAACAGCACTGTGAGCAGGAGTGGAGGCCCAGTCTTGGTCAGGAGGACCTTGAGACCAcacagattaaagaggaacaggGTGAACTCGGGACCagtcaggaggaagagcagcttcaaGTACCGGAGTCTGATACCAAAGAAGACTCCATATCTACTCTTCCCTGTGTGAAAAATGATGAGGACCGACCTCAGCCTTCACATCTTCCCCGAACCAAAACTGTGGAGAACAGAGTGAGGGAGTCTCTACTGACCAACACAACTGGACAGATCAAAACAGAACCTGATGGCTATGGAGTATCACTATCAGAACCAACCAGTGACTCCCCTCAGTCTCAGCCCGTCTCTGAAGTAAGTGCAGACTCTTCTAGAACACAAAGTCAGAACACTGAGAACACGGAAAGTGTTCCTATTGTTCTGAGAGATCTAGAAAGGAGACCAGAGGaggatacagacacacactcatgTGCTCAGTGTGGAGCCGTGTTCTGTGAGCTATCCCAACTGGAGGCACACATGCCAtcccacacagtaccacacagtggtgACACTAGTCACAGGCAAATCATGTGCACAGTCTGTTGGAAGTCATTCACCTCTACCAGTTACCTCAAGGTCCACCAGCGTTCTCACACTAAGGAAAAGCCCTttcactgtggtgtgtgtggcaAGAGCTTCAGCTACTCAGGGAAGTTTAGGGAACACCAGcgaattcacacaggagagagaccttACCGCTGCTACGTGTGTGGTAAACGCTTCAACCAGTCAGCCCACCTGAAGGCCCACCTGAGggtacacacaggggagaaaccctactcctgtcctgtctgtgggAAAGGATTCAGTCAGTCCAGCCAGATCAAGAGACACCTCAGAACTCACATCCAAGAGaggtagaataataataataacttggAGTGGAAAGAGCCCATGAGTGGATAAACAGTAACCTCGGAAACCGACTGATCTCACAAGCTTACATGAATGGTTCGCTACCACAGAATCAGTCTGGTAATTACGAGGCTAGATAGACAGAACCTACTGTTCTCAAAGTGCCCAGCATTTGGgaagagaaataaataaatacatttcttaTTTTCAGTGCTACTAATTCTACAGTAACAGTACCTCAAAGTGTTCATACACCTTGACTAATTCCACATTttggtgttacagcctgaattcaaaatggatttaaaaaataataataatctcacccatgtacacacaatagcccacaatgacaaagtgaaaatatatttttgaaatgtattgaaaatgaaatacagaaatatctcttTTACAcaagtgttcacacccctgagtcaatactttacaGAAGAACCTTTGgtggtgattacagctgtgagtttttctgggtaagtctctcagagtttgcacacctggattgtacagtaTTTGTCCATTTTATCATTAAAAAAATTATTCAATctctgtcaaattgattgtttatcattgctagacagccatttccaagtcttgccatagattttcaaaccggttcaagtcagaactgtaactaggccactcaggaacattcaatttgGTAtttgtaagcaactccagtgtagatctgGCCTTGTGttataggttattgtcctgctgaaaggtcaatttgtctcccagtgtctgttgaaaagGATTTGGCCTGTGCTTATAGctgttttctgtttctttttatccccaAAATTTcctttgctgatgacaagcatacccataacatgatgcagccagaaAATATGAAGCGTGGTACTCCgcgatgtgttgtgttggatttaccccaaacataatgctttgttttcaggacaaaaagttaatttctttgccaaatgttttgcagtattacttaagtgccttgttgcaaacaggaatatttttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1712678 lncRNA upstream 58951 83844040 ~ 83844970 (+) True G1498215
TU1712647 lncRNA upstream 64817 83837928 ~ 83839104 (+) True G1498185
TU1712675 lncRNA upstream 75446 83828236 ~ 83828475 (+) True G1498212
TU1712575 lncRNA upstream 94614 83805918 ~ 83809307 (+) True LOC110493277
TU1712666 lncRNA upstream 98210 83805407 ~ 83805711 (+) True G1498203
TU1712698 lncRNA downstream 8504 83914903 ~ 83915105 (+) True G1498233
TU1712703 lncRNA downstream 12991 83919390 ~ 83919689 (+) True G1498238
TU1712713 lncRNA downstream 28497 83934896 ~ 83935104 (+) True G1498246
TU1712714 lncRNA downstream 29828 83936227 ~ 83936427 (+) True G1498247
TU1712718 lncRNA downstream 35840 83942239 ~ 83942540 (+) True G1498251
XM_021570081.2 mRNA upstream 11305 83890323 ~ 83892616 (+) True LOC110494750
XM_036950796.1 mRNA upstream 13854 83879806 ~ 83890067 (+) False LOC110494749
XM_036950797.1 mRNA upstream 15506 83879805 ~ 83888415 (+) False LOC110494749
XM_021570079.2 mRNA upstream 35726 83863818 ~ 83868195 (+) True LOC110494747
XM_021570078.2 mRNA upstream 43870 83850465 ~ 83860051 (+) False LOC110494746
XM_021570083.2 mRNA downstream 97857 84004256 ~ 84017161 (+) True LOC110494753
XM_036950806.1 mRNA downstream 173154 84079553 ~ 84150390 (+) False LOC110494755
XM_036950804.1 mRNA downstream 196960 84103359 ~ 84150390 (+) False LOC110494755
XM_036950805.1 mRNA downstream 196960 84103359 ~ 84150390 (+) False LOC110494755
XM_036950808.1 mRNA downstream 224095 84130494 ~ 84150390 (+) True LOC110494755
TU1712638 other upstream 22733 83879932 ~ 83881188 (+) True LOC110494749
TU1712329 other upstream 269426 83614265 ~ 83634495 (+) True G1497918
TU1710572 other upstream 1734171 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 2070820 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 2301764 81432211 ~ 81602157 (+) True LOC110494696
TU1713169 other downstream 219438 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 589530 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 609718 84516117 ~ 84517180 (+) False G1498912
TU1713565 other downstream 621366 84527765 ~ 84554229 (+) False G1498912
TU1713564 other downstream 638191 84544590 ~ 84565607 (+) False G1498912

Expression Profile