RNA id: XM_036950803.1


Basic Information

Item Value
RNA id XM_036950803.1
length 1717
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110494754
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84032365 ~ 84046538 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAATTTGTTTTTCAATGCTCGGTTTGGTTGGATCCTCTCCAGAACCGAAGTTCGTCAGTAAGACTGGAGAGAATCACCTGACGTGTTTTGCAGATGACGGGTTTGACCCAGTTGTAATAGCTGATAAACTGAGGGAACTTGGAGATGATTTTGAAGTTAAGTTTATCCAGCCTCATATCAGAAAACTCCAACAAGCAGTTGCAGACAAGgcgGTGGAGGAGTTTGCGCGTACCGTGGACAGCCTGTGTGCGGCCCAGAGAACAGAGGTGGCCCCTGAGATGCAGCTGCTGAGGGCCTCCATGGCCCTGGGTCTGTACGTTAAGAAGACCTGTCCTGACCTTAGAGCCACCATCCAGTCTTGTATGACTGCCTTCATTAACAcccggctggctggctggatcaCCCAGCAGGGAGGATGGGATCAAGTTACTATGGTTTAAAAACATGGAGAAGATGTCATCCACATCATTTTTGTCTTAATGAGGAGGAGGTCTTAACTCCTCAAGTCTGTATATGTGTTAAgtcttccctctttctttttctttcttccctcctttcttccctctttctttcttccctctttctttcttccctctttctttctttctttctttctttctttctttctttcttccctccTTTCTTTCCTCTTTCTTTCATCTGTCTTATGTTCCTATCATGGCCATTTTGAACTTGCCAGTTGTATTCCCTCTTCACTTCCCCTAAGTTGGTTCTTTGAGGAAGAGACTGCGTCCCACTATCAACAGAATGTGACGTCTCCACTGACTTTTTGACCGTCCTCTCCTTGTTATAAGCAATGGGCACCTGCATCTGAAGTAACGTTGCACATTGGAATCATGACGTATTGCAATCCATGGCATTTTCTACATCACATTGTCAAAACAAGCAATATATTTTTGTAGAAAAACAATCCGATGCAATGTTTTGTGCTTTTGAAGCCCTTTCCTAAACAATAGAGGCAGGTTACCAGATGATCACAACAAGCTTTCATTTTTACGCCGATGGACCGTCTTTCATTTAATGTGAGAATGAACTTTGACCTAATAACATGACTCACAATAAAAGTCCATGTAATCGCCGAAGCTGTGATGTTGAATACTTGAAAATGAACCGTCACTGAGTCGTGCATCGCTTGATGGAACCTGAAATGCTTTACGTTTTGTTTGACCATGTTTTCTAATATGCTCTTATCCTCAATCACTCCGTGCTTGTTAAACATGCTTATTGTTAGCTCTACTCAACAAATCAATGTGCGACTTTGTTAAATGTGTGTGTTGCTGGTGTTAGCTCATCTTGATTTGAGTAAAAGGAAAAAGTCTTTAATATGATATGCGTTAAGAAAACGAATTAGTGTTAACCAACTGTGAGTTAAGAGTTATTTATAGTTTTGTAGACTTCCTCAGAGCTTGTAGAGGGAAACTACAGTAGGAAAGTGCCTCTGGTCAAAGTCAGTATTGTTTCAATGTCAGCTCTGACTCATACCATTTACAGTCACTTCACCTTTATTAAAGATGCACAGAACCATCATGTGGAAATGGACCAAAGGGAATTACAAAGTAGATAAGGTtttattgtaatttttttttcaattgtacATTTGTGCCTATTTGTGTGTAATTCTGTCTGGTTTTAATAAAACATGGAGCTTTGTTGTGAAGTCTCACGGCCTTGCCTCTGTTCTGGTGTGATAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1713023 lncRNA downstream 28731 84003405 ~ 84003634 (-) True G1498470
TU1713016 lncRNA downstream 34744 83997376 ~ 83997621 (-) True G1498463
TU1712974 lncRNA downstream 73933 83958165 ~ 83958432 (-) True G1498421
TU1712972 lncRNA downstream 75529 83956550 ~ 83956836 (-) True G1498419
TU1712968 lncRNA downstream 78938 83953212 ~ 83953427 (-) True G1498415
TU1713122 lncRNA upstream 21058 84067118 ~ 84067470 (-) True G1498541
TU1713124 lncRNA upstream 21822 84067882 ~ 84068289 (-) True G1498543
TU1713128 lncRNA upstream 23333 84069393 ~ 84069609 (-) True G1498547
TU1713132 lncRNA upstream 25854 84071914 ~ 84072259 (-) True G1498551
TU1713135 lncRNA upstream 28474 84074534 ~ 84074752 (-) True G1498554
XM_021570070.2 mRNA downstream 180308 83837851 ~ 83852057 (-) False ccdc66
XM_021570071.2 mRNA downstream 183189 83837851 ~ 83849176 (-) False ccdc66
XM_036950794.1 mRNA downstream 183189 83837851 ~ 83849176 (-) False ccdc66
XM_021570069.2 mRNA downstream 183190 83837851 ~ 83849175 (-) False ccdc66
XM_021570068.2 mRNA downstream 183191 83837851 ~ 83849174 (-) False ccdc66
XM_036948440.1 mRNA upstream 644725 84690785 ~ 84713397 (-) True LOC110493281
XM_021570090.2 mRNA upstream 680450 84726510 ~ 84730729 (-) False LOC110494760
XM_021570099.2 mRNA upstream 835928 84881988 ~ 84887491 (-) True slc32a1
XM_036950825.1 mRNA upstream 904460 84950520 ~ 84974232 (-) False LOC110494769
XM_036950826.1 mRNA upstream 904460 84950520 ~ 84979671 (-) False LOC110494769
TU1712995 other downstream 49471 83982341 ~ 83982894 (-) True G1498442
TU1712523 other downstream 426612 83605243 ~ 83605753 (-) True G1498077
TU1711213 other downstream 1370727 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 1786378 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 1792101 82235128 ~ 82240264 (-) False G1496689
TU1713103 other upstream 4950 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 1175065 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 1240596 85286656 ~ 85288117 (-) False G1499684
TU1714522 other upstream 1240596 85286656 ~ 85288117 (-) True G1499684
TU1715872 other upstream 2193658 86239718 ~ 86242928 (-) True LOC110494779

Expression Profile