RNA id: XM_021570094.2



Basic Information


Item Value
RNA id XM_021570094.2
length 1129
RNA type mRNA
GC content 0.49
exon number 2
gene id si:dkey-33m11.6
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84797188 ~ 84798988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctctctctctctctctgctctccctccctccgcccgcGGGATCCGTGTTTTGCATCGCTCCCCAATTTGCATTTTTTCCTCAGACTTTCCGTGCGGCGCTCCAGCCGTTCTTCTAGCTAGAAGGCGTACCACGGTGGCAATATCCATGCGCCCCGCGTTTACAGAACAATACTCACAGTAGAACCCACTGGAACATGTGAATAATGTTGCCGAAGCTTTCCGAAAGTAGAAATTGagcgttttaaaaaaaaaatcaatttggaTCAATCGCGTTTTGGTTGCGAGACACGTGCCTTCGAGGTAAACAGACAGCAGGACTGGGCAGCCAGATAACGTTAGTACTCTTGGTTAACGTTACATTGTTTTTCTCCTGTGTTACAAGCGTGTATAAGCGGTTATAACGCCACCATAGTGGACGTAGACGTCGAGCGGAGGTTCATTTTGTTTTAGTTTGTGCACCTTGGTTGATAATTGAGACGCAGTTGGACATGTCGGAAGTACTACAAGACAAAATGAGTCATTATGGAAATGAGGATGACGAGGGACACCTTTCCTTCACCTGTCGCCTCCAAGACACCAACAACTTCTTCAGCGGCTCGCAGGGGGGAAAACGCCCACCCAAACTTGGACAGATAGGCAGAAGCAAACGAGTTGTTGAGGACGAGAACGGCGTTGACGAGGCGCTAAAAAACGGGACAGAGAAAACACAGACAGAGGCTTAAACACATCACCCCCTGGAAGGACATTGATTCTCATTTTCTATTTGATATTTGCAGTTTTGATCCAAAGACACTGTATATAAGCACTTTTAACCCATGTGGCAACAAGCACTTCCagtcccatctcctctctctcccagtcctcaTGATGATCTCCTGAGACTTATACTGGCAGGATGGGGAAGCAGccgagatggagacagagggagtgatGGACACAGAGgcggagacagacagagtgatggagacagacagagagttggagacagagagagtgatggacaCAGAGGCGGAGACAgaggtggagatagagagagtgatcGAGACAGAGGTGGAGACACAGAGAGTGATCGAGGCAGAGGTGGagacagaggtggagacagaggTGGAGACACAGAGAGTGATCGAGg

Function


GO:

id name namespace
GO:0006469 negative regulation of protein kinase activity biological_process
GO:0004860 protein kinase inhibitor activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1713897 lncRNA upstream 24019 84772884 ~ 84773169 (+) True G1499180
TU1713894 lncRNA upstream 27209 84769648 ~ 84769979 (+) True G1499177
TU1713886 lncRNA upstream 59001 84737312 ~ 84738187 (+) True G1499169
TU1713872 lncRNA upstream 65504 84731309 ~ 84731684 (+) True G1499164
TU1713852 lncRNA upstream 73383 84723532 ~ 84723805 (+) True G1499161
TU1713916 lncRNA downstream 28218 84827206 ~ 84836536 (+) True G1499197
TU1713940 lncRNA downstream 93745 84892733 ~ 84892972 (+) True G1499215
TU1713952 lncRNA downstream 115954 84914942 ~ 84916728 (+) True G1499225
TU1713969 lncRNA downstream 158668 84957656 ~ 84958022 (+) True G1499238
TU1713990 lncRNA downstream 202699 85001687 ~ 85001910 (+) True G1499257
XM_036950823.1 mRNA upstream 4013 84789174 ~ 84793175 (+) False LOC110493283
XM_021567536.2 mRNA upstream 4013 84789929 ~ 84793175 (+) False LOC110493283
XM_036950813.1 mRNA upstream 31248 84732235 ~ 84765940 (+) False LOC110494762
XM_021570095.2 mRNA downstream 41529 84840517 ~ 84848351 (+) True ddx19
XM_021570096.2 mRNA downstream 54337 84853325 ~ 84857469 (+) True LOC110494765
XM_021570097.2 mRNA downstream 59697 84858685 ~ 84869382 (+) False LOC110494766
XM_036950824.1 mRNA downstream 60231 84859219 ~ 84869382 (+) True LOC110494766
XM_021570098.2 mRNA downstream 72826 84871814 ~ 84879260 (+) True aurka
TU1713884 other upstream 4688 84789132 ~ 84792500 (+) True LOC110493283
TU1713482 other upstream 111805 84677540 ~ 84685383 (+) True LOC110493280
TU1713564 other upstream 231581 84544590 ~ 84565607 (+) False G1498912
TU1713565 other upstream 242959 84527765 ~ 84554229 (+) False G1498912
TU1713556 other upstream 280008 84516117 ~ 84517180 (+) False G1498912
TU1713850 other downstream 11543 84810531 ~ 84811185 (+) True G1499159
TU1714100 other downstream 415805 85214793 ~ 85216073 (+) True G1499347
TU1714110 other downstream 470138 85269126 ~ 85288116 (+) False LOC110494772
TU1714111 other downstream 470138 85269126 ~ 85287417 (+) False LOC110494772
TU1714112 other downstream 470138 85269126 ~ 85288116 (+) False LOC110494772

Expression Profile