RNA id: XM_036950824.1


Basic Information

Item Value
RNA id XM_036950824.1
length 2400
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110494766
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84858685 ~ 84869382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGCGTCACACCGCAAACACATGGCTTCTGCCTCCTCCGATGCAACCTAGATTCTTCATCGAGAAAGAATCCATCCGTGGATACATTTAGGCTATTTTACAAGTCAAAGCACCAGTTTTAAAAAAAGGATGACACTCAGCTGCTATGTAGACAGAGTTGAATTAAACCACCATCCTTGGGAGACAGTCACCAAGGCTGCGATGCAGAAGTACCCCAACCCCATGAACCCCAGTGTGTTTGGGGTGGATGTGTTGGACCGTAGTGTGGACACACGGGGACGCCTGCACAGCAACAGGCTGCTGAGCGCTGAGTGGGGCCTGCCCTCCATCGTCAAGTCGATCATTGGCAGAACACAGACGTGCACATACATCCAGGAGCATTCTGTAGTGGACCCCATTGAAAAGACATTCGAGCTTCAATCTTCAAATATCACATTCACTAACATGGTGTCAGTGGATGAGAAGCTTACATACAGACCACATCCTGATGACGCAGAGAAGACGATATTGACTCAAGAAGCTCTCATCTCAGTCAAAGGGGTTAGTCTGAGTAGCTACCTGGAGGGAGTTATGGCTAGCACCATCTCTGCAAACGCAGGCAAGGGTCGTGAGGCGATGGAGTGGGTGATCAGGAAGCTAAATGCAGAGATCGAAGAGCTGGCAGCCGCCGCCCGCGGCACCATAAGGCCTCCCATGGCTGCTGCTATGACTGCAGAGAAATGATACCTCTAAGTTCCCAACGACCAGCCTGGGGACATTGTTCTTCTCCTGCGTCAGAACAGACTCCACCTCCCTTTAGACTCCACCTCCCTTTAGACTCCACCTCCCTTTAGACTCCACCTCCCTTTAGACTTGTCTGATTCTCATCAACTGGACAGGAATCAGATCTACAAGTTTGATTACAATTTAAGTACTgtatttattgttattatttaagTACTAACTGAAATGAAGGGAACAACGGTAAtcctagtatatatatattttttaaacattttatagGCGAGGAGCATCTCAAATGCAGTGTCTGTTGGAGTAGAATCTATTCTCAGTTGCTCTGTGCCCAAGTTTGAGACTAGAGCAGGTCATGTTATCAGCATGCAGTAGTACTATAGCCTCAGGGACCGTGTCAAATATAGAGGACGGTTCATGCAATCACCTATAACAGACAGAACAAGAACAGGTTCAACATGCTGCATTTTAATACCGTCTTCCCTGCGTAAAGCTGCACCTAAACTAAGAATGGTAAGGCGTGGTTGGGGTTTTTCATACTTGACCGTGACATATATTTATTGCGTGAAGTCACTGACAAGGGGGGGGAGTAAACTGTGACTTTGGGAAGAAGAAACGGATAAGAAACGTACGATTCCTCACGGAATATTACTAATGGATTGTTCTTCGGTGCCTCAGAAGTCTGACCCTCTGCCAGCACAAAATGTCTGTGTTCTCAGAGTGTTATGACCTCAAcaatgaatgcattttctaacGCACATACTGTACAGAAGAGAGGGGTCGTGCTCCGGGCCCTCCAGTAATATTCTGCATTCTCTCCCAAGAGTGAAACTAAGTATTTAAATAATAAGTGTTTTGGTTAAATGTTCTGTACTGCTATAGCCTCCAGTATGTTATGGAAATGTCTGCTATGTTTGACGTATGGAgagaatgtattatttatttgatgTGTATATAGAGAGATGAATGTGTTTTTTAATTTGGTTGTAAACAATGGTACTTGTTGTCAGTGGTACTTACAGCCTGGGATGTCCAGTATATATTCTAGATCATAACCCTTGAGGAGATCAAATGCCTCTGCTACCAACTCTAAGGGACGGTTTCCTGTACGCAGATCAAGTTTAACACTGTACTATTGATATGTTGTGTTTTTAATCCAGGACTAGGTGTAATCTGTGCAAACCTGACCAGaatgttttgtcttgtttctatGGTGACAACTTGTGTTGTCGAGGGCGATACGTCAAGGAAAGGAAGATGCTACAGTGTGATGTATGCATTCCAAAAACCATGCCAGTTTGCATTCTCAATACAATTGTGTTATGTTGCCAGAGTCAGTTCTAATATGCTTTTACAGTGGTAATGTCAAATATTCCTGGTTTGTTAATGaatgttctgttctgacctgatGTTAGAACAAAGGGACATGTTGATCGTTCTAACATGTAAGGAGGAATTTTGTGggtgtttttaaaaaatatatttattttttttacccatatTTAGAATACAATAACTTAACTCTACACCTGCACAACAATAAAACTCAGTTGGTGCTGAAGTCATAATGGATTTGAATGCTTCTGTAAACTCAAGTTCCAAATGGTCAAACAGAAATGAAGACCAGGCATGTTGGTTTACATGAAAGAAATAAAGTCCTCTAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1713916 lncRNA upstream 22683 84827206 ~ 84836536 (+) True G1499197
TU1713897 lncRNA upstream 86050 84772884 ~ 84773169 (+) True G1499180
TU1713894 lncRNA upstream 89240 84769648 ~ 84769979 (+) True G1499177
TU1713886 lncRNA upstream 121032 84737312 ~ 84738187 (+) True G1499169
TU1713872 lncRNA upstream 127535 84731309 ~ 84731684 (+) True G1499164
TU1713940 lncRNA downstream 23351 84892733 ~ 84892972 (+) True G1499215
TU1713952 lncRNA downstream 45560 84914942 ~ 84916728 (+) True G1499225
TU1713969 lncRNA downstream 88274 84957656 ~ 84958022 (+) True G1499238
TU1713990 lncRNA downstream 132305 85001687 ~ 85001910 (+) True G1499257
TU1713991 lncRNA downstream 132791 85002173 ~ 85002501 (+) True G1499258
XM_021570096.2 mRNA upstream 1750 84853325 ~ 84857469 (+) True LOC110494765
XM_021570095.2 mRNA upstream 10868 84840517 ~ 84848351 (+) True ddx19
XM_021570094.2 mRNA upstream 60231 84797188 ~ 84798988 (+) True si:dkey-33m11.6
XM_036950823.1 mRNA upstream 66044 84789174 ~ 84793175 (+) False LOC110493283
XM_021570098.2 mRNA downstream 2432 84871814 ~ 84879260 (+) True aurka
XR_005037091.1 mRNA downstream 78963 84948345 ~ 84950742 (+) True LOC118940501
XM_036950828.1 mRNA downstream 172791 85042173 ~ 85212327 (+) False LOC118940502
XM_036950829.1 mRNA downstream 172791 85042173 ~ 85212327 (+) True LOC118940502
XM_021570101.2 mRNA downstream 360309 85229691 ~ 85241799 (+) False fam210b
TU1713850 other upstream 48034 84810531 ~ 84811185 (+) True G1499159
TU1713884 other upstream 66719 84789132 ~ 84792500 (+) True LOC110493283
TU1713482 other upstream 173836 84677540 ~ 84685383 (+) True LOC110493280
TU1713564 other upstream 293612 84544590 ~ 84565607 (+) False G1498912
TU1713565 other upstream 304990 84527765 ~ 84554229 (+) False G1498912
TU1714100 other downstream 345411 85214793 ~ 85216073 (+) True G1499347
TU1714110 other downstream 399744 85269126 ~ 85288116 (+) False LOC110494772
TU1714111 other downstream 399744 85269126 ~ 85287417 (+) False LOC110494772
TU1714112 other downstream 399744 85269126 ~ 85288116 (+) False LOC110494772
TU1714113 other downstream 399744 85269126 ~ 85288116 (+) False LOC110494772

Expression Profile