RNA id: XR_005037091.1


Basic Information

Item Value
RNA id XR_005037091.1
length 2292
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC118940501
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84948345 ~ 84950742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGTTCTAAACCATATATACAGAACTAGCATTGTAACCTACAGTAGGGTAAATGTCTTTCAGAGCACTATGGTAGCATTTGACTGTGACTGTGAGTACATTATTACAAAGCAAAGTCCATTCATTGAAGACATTCAGTCTACTCAGGTTATTACAGTAAAAGACATTTCTCTATTTTCCGATACTCCTCATGTCGAGTCCTCAGATCTTGACACACACATGTGTTTATGACGTCACGTTCTAGTGTAGAAGACACGGAACATTGAACATTCCAACACGTCAGTTCTCCACATGCTGTACATGTGGCCCATGTTATTGGTCAgctgtttgcgtgtgtgtttgcatcAATATCTCCTCATGTACTGTGGACTGGGGTGTATAGTGTCACTACTTCCCCTGAGGGAGAACAGAGCTTTAGAGGTGACCTAGTTCCACTGATTAATGTCAGCAgaaggccgtgtgtgtgtgtgtgtgtgttccatcagTGCTTTGTACCGGGGTACTGAACTGTGCCATGGACTCAGGACTCAACCCAATTGGGCTTGTGTAATGaagcaagcaagcacacacacacacacacacatgcacacgcacacacacacgcaagcacgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacgcacgcacgcacacacacacacacacacagagagagataataacaTCCGTATAACACCCAGATATTACCCTCTCTATCAACCAGAAGAACTGACTCCTCTGTGGTAATGTTCATGGAATACATGAACCAATATATGAACCAATACATGAACCACTGCATGAACCAATACATGAACCAATACATGAACCACTGCATGAACCAATACATGAACCAATACATGAACCACTGCATGAACCAATACATGAACCAATACATGAACCAATACATGAACCAATACATGAACCAATACATGAACCAATACATGAACCAATACATGAACCAATACATGAACCAATACACCATGACGATGCATCAGTAGGTCGTGTGACAGACAGGGAATTACACTGTGTGATGGATGCTGGCTGTCATTACACTGCTGCTCGGTTCTCTCTCCTAAAATGGCAGCACAATAGAACAGAAGGCTGTGGCTCTGACTCTGTACTGAACAATGACTGAACCAATGACTGAACCAATGACTGCTGTGACTGAGATGAGATCTATGCAGTTTGTTACATTCTTGTTGTCACTTCTGAGGAGACTGGTAGCTAAACATACATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTAATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATATGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTATAAATTCATGATAGGTTGTAGATATGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGTTGTAGATGTGTAAATTCATGGTAGGCTGTCATGTAGAACATGTGTATACTTTATATTGATGTGATGGTGCAATGTCCAAGCTTCCTCAAAACGTGTAAACACGATTCATAGATTTCATATAGAAGTGTACTCTGTAGAAGTGATGACACATGGGTAATAGGACGAGAGAATAAATACGCAGAACCGCAGCAAAGTACAACTGATCAAAACATTTACAAGAATAAGAAGACTGTCTGAAAAGAGTCCCCGAAAAGAGTGGATGAGCTTACATGACTGTTATGTTACGATCAGAAACACCTATTGAACCGTTTCCAAGGAGAACATTAATCactacatacatatacatacagatACATCCAATCAATTATAAATAGTCAATCCATCGTGATATTCAATACTTCATAAAAtccttcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1713952 lncRNA upstream 31617 84914942 ~ 84916728 (+) True G1499225
TU1713940 lncRNA upstream 55373 84892733 ~ 84892972 (+) True G1499215
TU1713916 lncRNA upstream 111809 84827206 ~ 84836536 (+) True G1499197
TU1713897 lncRNA upstream 175176 84772884 ~ 84773169 (+) True G1499180
TU1713894 lncRNA upstream 178366 84769648 ~ 84769979 (+) True G1499177
TU1713969 lncRNA downstream 6914 84957656 ~ 84958022 (+) True G1499238
TU1713990 lncRNA downstream 50945 85001687 ~ 85001910 (+) True G1499257
TU1713991 lncRNA downstream 51431 85002173 ~ 85002501 (+) True G1499258
TU1714010 lncRNA downstream 74629 85025371 ~ 85028920 (+) True G1499266
TU1714003 lncRNA downstream 79207 85029949 ~ 85033529 (+) False G1499263
XM_021570098.2 mRNA upstream 69085 84871814 ~ 84879260 (+) True aurka
XM_021570097.2 mRNA upstream 78963 84858685 ~ 84869382 (+) False LOC110494766
XM_036950824.1 mRNA upstream 78963 84859219 ~ 84869382 (+) True LOC110494766
XM_021570096.2 mRNA upstream 90876 84853325 ~ 84857469 (+) True LOC110494765
XM_021570095.2 mRNA upstream 99994 84840517 ~ 84848351 (+) True ddx19
XM_036950828.1 mRNA downstream 91431 85042173 ~ 85212327 (+) False LOC118940502
XM_036950829.1 mRNA downstream 91431 85042173 ~ 85212327 (+) True LOC118940502
XM_021570101.2 mRNA downstream 278949 85229691 ~ 85241799 (+) False fam210b
XM_036950831.1 mRNA downstream 279328 85230070 ~ 85241799 (+) False fam210b
XM_036950832.1 mRNA downstream 280040 85230782 ~ 85241799 (+) True fam210b
TU1713850 other upstream 137160 84810531 ~ 84811185 (+) True G1499159
TU1713884 other upstream 155845 84789132 ~ 84792500 (+) True LOC110493283
TU1713482 other upstream 262962 84677540 ~ 84685383 (+) True LOC110493280
TU1713564 other upstream 382738 84544590 ~ 84565607 (+) False G1498912
TU1713565 other upstream 394116 84527765 ~ 84554229 (+) False G1498912
TU1714100 other downstream 264051 85214793 ~ 85216073 (+) True G1499347
TU1714110 other downstream 318384 85269126 ~ 85288116 (+) False LOC110494772
TU1714111 other downstream 318384 85269126 ~ 85287417 (+) False LOC110494772
TU1714112 other downstream 318384 85269126 ~ 85288116 (+) False LOC110494772
TU1714113 other downstream 318384 85269126 ~ 85288116 (+) False LOC110494772

Expression Profile