RNA id: XM_036950829.1


Basic Information

Item Value
RNA id XM_036950829.1
length 3800
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC118940502
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85042173 ~ 85212327 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCAACCCCACCCTCCTCCCGGTGTGACTTGTAGTCGAGGGGCGTTCTGTAACAGTCTGCAGCGGGCGGCAGCTAGCGACACAGCTGCGGTAGCATTTCTTGCCTGCCCCTCTTGTCTCCTGTACAGCTATAGCGCTACTAGTTAGCCACAGGACAATATCCCTGCTGTAGGCTTCAAGACATGTTCGTCTTCAAGAGTTCCACTCATCCCAGTGAGTGAAATTGGAACAAGTTAGTCCATTGATAACCTACATACGCAGGTGGTCTAGTCACAGCTGAtgagtgtgatgatgatgatgatgggaaGAGGCTACTGCAGCCGAAGGTGCAGTCCCCCACGCCAGTGCTAGTACCCGTCTCCAGtctccaacccctggttcctctGCCAGCCCTGGTCCCACTTGGCACCACCTCTGGCCCCACCATGGCtaaccacctggagcttctcaaTGAGCTGCAGCAGCTGGACAAGGTGCCTAGTCTGGAGCGCCTGAGGGCTGCCCAGAAGCGCCGCACACAGCAGTTGAAGAGATGGGCCGTGTACGAGAAGGAGATGCAGAACAAGAAACGCAAGGCGGAAAAGAGAAGGAACGCTAATCATGCCACCGCCATGGAGGCTAAACGGCACGTATCGTTTGCTGCTAGTGTGGCGCTGCTAGAGGCCTCGGCACGGAACGATCCTGAAGAAGTACGTTACCTGTTGAAGAACAACGTCAGTCCAGACCTGTGTAACGAGGACGGTCTCACTGCTCTGCACCAGtgcTGTATTGATAACTATGAGGAGATGGTCAAGATAATGTTGAATCGTGGAGCCAGTGTAAATGCCAAAGACAATGAACTGTGGACGCCGCTACACGCTGCTGCCACCTGTGGACATGCAGGATTGGTCAAGGTCCTCATACAACATGGAGCGGATCTGTTAACGGTGAACTCTGACGGCAACATGCCCTATGACTTGTGTGAAGATGACCCCACACTGGACATCATCGAGACCGCCATGGCCAACAGAGGCATCACCCAGGAGATGATCAATGATACCCGGGCGTCTgtagagaggaggatgatgggagATATCCAGGAGCTGCTGACGGAGGGAGAGGACGTCAACCACCATGATTCACAGGGAGCTACTCTGCTCCACATTGCAGCAGCTAACGGTTACGTCCAGGCTGCAGAGCTTCTGCTGGAGGGAGGGGCCAGGATGGACCTGAGAGACACTGACGGATGGCAGCCGCTCCACGCTGCAGCCTGCTGGGGTCAGATGCATGTAGCAGAGCTGCTGGTTTCTCACGGTGCCAGTCTCAATGCCAAGACCTTCCTAGAGGAGACTCCCATTGACCTGTGTGAGGACGAGGAGTTCCGAGCCATCCTGCTAGACCTGAAACACAAACACGACATCATCATGAAGTCTCAGCTTAAACACAAGACCTCCCTGTGCAGGAGGACATCCAGCGCAGGCAGCCGTGGGAAAGTGGTGCGGAGGGCAAGCCTGTCTGACAGACACAACCTTCGTGTGAAGGAATACGAGACTGAGGCCATCgtgtggagaggagggagggaaggagggagggaaggagggagggaggagcaggagaaggagacggaCCAGGAGAACAGCCATCCCATCAATACAACTGGTACTACGGTGAAGCCAGTAGTGGAGAGACCCAAACTACAGAAGACCTTGAAAGATGCTCCTAGCGGCATCATCAAACAAAATGGCATCGTCTCCACGACGACGTACTCGCCCACTCCCAGTCAGCTGCCGCCAACCAATGACGAGCCTCCATCCCCTGACACGAAGAGCGCGTCAGCCGATCAGCTCCCAGaggactcctcctcctccttgcccAGAGAGCGCTCTCAGACCCTGTCGGAACTGAAAAAGCAGAGGTCGGCCGCCAAACTCCTCAATCACCCGCTCCTCAACGGTCACCTAGGAAACGGCTCCACAGAATCCACCGAACCCCAGAGCCCTGTGGACTCCCGTATGCCCCTCGTCTCGTCCAATGgcagtacagtatactacacccCGGCAAGCGGTGACCCGCCCATTCTCAGACTCAAACAGCCATTAGATGACGAGGAACCAAAGGAGGGCAGCTGCTGCTGTGTCTCctagggaggaggtggaggccaCCCCATGACACCGATCTAAGGTCAGGCTTACTGTGTTTTCCTCCaatggattaaggttagggttcggggagggaaagctgatcctagatctgtgcctaagggaAACTTCTTCCCGGATAGAGCGTGTCAGAGCAGGATGGTCTTGTGACTGtggagcaggaagcaggaagagATTGCACAGAGGGAGACCAACAGGTAGAGCAAAGGTCTTCAAAGGTCCTAGATGACAATGTGAGTGGAGCTGGTCCAGCCAGGTGATTGGTCCCTGTCCCTCCCCACTGTTTAACACTCCAGGCCAGTATGGAGCATACCCTTACTCTGGAAAATGACCGTCCTGATAGGACGTGAGGAATCCAGCCCAGATGAATTGGGGAGGAGCCACTGTGATAGCTTGTGGTTGATGCAGAGGGCCAGGAGGTGGAACAAGATGGCCCCTTGCCCCTACGAGAAGGCAGGTCTTGTGCCCTATAAAGGAATAGATGGCCAGGCAGTGTGCACTCCCATGTTAACCATATCTGGTGTCTTACAACTTTTGACTGAATCACTGTTTTCAAACCACATTCCTCCTTGTATCCACTGTCTCTGAaagtgtatggggggggggggcattgcaaAGATCCACTCCACCATGTCAGAATACACTCTCAGTATTATTACTGCAGCTGTGTTGGTCCACTGAGAGGCAAGAGGGGAAGGGTCGTCTTTCCTAAGAAGTATTCTCGTTTAAATGCTGACTATTTTAGCAAAGGGAAGGAATGTTTAATAGAGTAACAGAACAGTATTACTTCAACGGTCTACCATCTATCTGTTCCTGTGAAGGATGAAAGGTTGACTGCACTAAAGACGTTTAAAACAATGCCACGTTGAACTCCTGTCTTCTCTTGCTGACCGTCCGTATCCTAACTGACAGGGATCAAGGTGGTAGAAAGGGGGGTTTCATATCTGTCTTATTTGTTGGTCATTTAAGAAAAAACAATATTATTTGAAAATGTGTACAGTTTGTTGCTGTTTATTTATGAAGATTAATGTTATGTATAAAGGCTATGGTTATACAGTGTTTTAAGGTAATGTATAATGGCTATGGTTATACAGTGTATGAATTCTATTGGTCTATCTATGGAGAGGGAATGCATTAGAATGAGCTGGTACATTTACAGTATGTCTTGCTCCCCTGTGATCCCAGATCTGCTTGTACTGTCTTGTCACTGTCATGGAgttggcacaaacagatctgggatcaggctagaaGCACTGCACCTTTTTAGAATGGAAATGTCCCTGTGCAGTTAACAAGGTTATTGTCCAGGGATCTGTAGCTTGTGTTTAGCCAGGCACTGTGTCGGTTTATCCTCAACCATACCAGGCTAGCTTGTTTAAGGGTGGCACCAACATACTATTGGaatataagcatttcactacactcgcaataacatctgctaattatgtatatgtgaccaataaaatttgatttgatatcttgTTTGTATTTGACATGGtcagtacaacacacacagtagatatggtgttGTCTAGGGAACTGAggagtgtgtacagtgtgtttaAATCACCTTTGAATTGTCACAGACACTGTAGTTTTCTCTAACACAAGTGTTCATTAATATGAAGTGTTCATTAATATGAAATAAAATGCTGTAATGTA

Function

GO: NA

KEGG:

id description
K17459 PPP1R16B, TIMAP; protein phosphatase 1 regulatory inhibitor subunit 16B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1714003 lncRNA upstream 8644 85029949 ~ 85033529 (+) False G1499263
TU1714005 lncRNA upstream 8644 85031769 ~ 85033529 (+) True G1499263
TU1714010 lncRNA upstream 13253 85025371 ~ 85028920 (+) True G1499266
TU1713991 lncRNA upstream 39672 85002173 ~ 85002501 (+) True G1499258
TU1713990 lncRNA upstream 40263 85001687 ~ 85001910 (+) True G1499257
TU1714101 lncRNA downstream 3807 85216134 ~ 85216364 (+) True G1499348
TU1713848 lncRNA downstream 8788 85221115 ~ 85221484 (+) True G1499157
TU1713847 lncRNA downstream 11186 85223513 ~ 85225700 (+) True G1499156
TU1713846 lncRNA downstream 30336 85242663 ~ 85244786 (+) True G1499155
TU1714128 lncRNA downstream 59594 85271921 ~ 85272726 (+) True G1499366
XR_005037091.1 mRNA upstream 91431 84948345 ~ 84950742 (+) True LOC118940501
XM_021570098.2 mRNA upstream 162913 84871814 ~ 84879260 (+) True aurka
XM_021570097.2 mRNA upstream 172791 84858685 ~ 84869382 (+) False LOC110494766
XM_036950824.1 mRNA upstream 172791 84859219 ~ 84869382 (+) True LOC110494766
XM_021570096.2 mRNA upstream 184704 84853325 ~ 84857469 (+) True LOC110494765
XM_021570101.2 mRNA downstream 17364 85229691 ~ 85241799 (+) False fam210b
XM_036950831.1 mRNA downstream 17743 85230070 ~ 85241799 (+) False fam210b
XM_036950832.1 mRNA downstream 18455 85230782 ~ 85241799 (+) True fam210b
XM_036950833.1 mRNA downstream 56795 85269122 ~ 85288111 (+) False LOC110494772
XR_005037093.1 mRNA downstream 107076 85319403 ~ 85320964 (+) False LOC118940504
TU1713850 other upstream 230988 84810531 ~ 84811185 (+) True G1499159
TU1713884 other upstream 249673 84789132 ~ 84792500 (+) True LOC110493283
TU1713482 other upstream 356790 84677540 ~ 84685383 (+) True LOC110493280
TU1713564 other upstream 476566 84544590 ~ 84565607 (+) False G1498912
TU1713565 other upstream 487944 84527765 ~ 84554229 (+) False G1498912
TU1714100 other downstream 2466 85214793 ~ 85216073 (+) True G1499347
TU1714110 other downstream 56799 85269126 ~ 85288116 (+) False LOC110494772
TU1714111 other downstream 56799 85269126 ~ 85287417 (+) False LOC110494772
TU1714112 other downstream 56799 85269126 ~ 85288116 (+) False LOC110494772
TU1714113 other downstream 56799 85269126 ~ 85288116 (+) False LOC110494772

Expression Profile