RNA id: TU1714113


Basic Information

Item Value
RNA id TU1714113
length 1022
RNA type TUCP
GC content 0.46
exon number 5
gene id LOC110494772
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85269122 ~ 85288116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGCAGGGAGGACTTACAACAggtccttgttctctctctccatagctgcagacagaaacagactggtTCAAACACAACTCTGCTGTACATATATCTATCTACACAGGGAGCTGCTTTCACATGGACACAAAAGCATTAGAGACTTCGTAGAAAATATCATTAGTTTGTATTTACATTTTGTTGGActtttgtttatttgtgtgtgtaggtgttgtAGGATCTGGGATAAACATGCCGATTAGGACAGTGATTACGCATGCTAAGAAACATCCAGGGcTCATCCCTCAGTTCTTCTTCTTGGTACTGGGCATGGCTGGGGCTTCCTGCTATCTGATCCGTCTGGCCAAGGGACCCCATGTCAGCTGGAACAGAAAGAACAATCCTGAGCCTTGGAACACATACGGTCCAAACTatcagtacaagTTGGTGGCCGTCAACACGGACTACAAGGCTCTGAAGAAGGAGGGCCCTGACTTCTAAAGGTCCTTCAGGCAACTCCAGGGGCACCACGTTTGGCAGGACCTCCTGTCATCCTAGTGGCAGGGTGGGGGCCAGCCTGAGCCTCGCTCGGTCTGCCTCCTCCGCTGCCTTTTAACCTTTCACACCACATCACTATAGTGAAGAGAAAAAAAACCGTTCATTTTCTGGCACAACCCGGAAGTCATGCATCCGTCTCCAAACAACGGTGTTATATAACAGTCTCCTCTtcacacactacaacactgttCATTATAGCCATCTTTTCACAATGCACAACCCTAAAGTGAGCctctttccacacacacacacacaacactagtGTTGTGTACATCTCTGTACATGCAATGTCACCTTCTCTGTAAAATGTACAACCCTCTCCAACCCTAAAGTGACGGAACAGCCTCTTTCAACACACCAGACTAATGTTGTATACATCTCTGTACATGCAATGTCACCTTCTCTGTAAAATGTACAACCCTCTCCAACCCTAAAGTGATGGAAGCTTGAAAACAAATGCATTAAAAGATAACATAAAAGAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1713846 lncRNA upstream 24340 85242663 ~ 85244786 (+) True G1499155
TU1713847 lncRNA upstream 43426 85223513 ~ 85225700 (+) True G1499156
TU1713848 lncRNA upstream 47642 85221115 ~ 85221484 (+) True G1499157
TU1714101 lncRNA upstream 52762 85216134 ~ 85216364 (+) True G1499348
TU1714094 lncRNA upstream 70945 85195899 ~ 85198181 (+) True G1499344
TU1714139 lncRNA downstream 10451 85298567 ~ 85301108 (+) False G1499375
TU1714143 lncRNA downstream 10451 85298567 ~ 85301108 (+) False G1499375
TU1714144 lncRNA downstream 10451 85298567 ~ 85301108 (+) False G1499375
TU1714145 lncRNA downstream 10451 85298567 ~ 85301108 (+) False G1499375
TU1714146 lncRNA downstream 10451 85298567 ~ 85301108 (+) False G1499375
XM_021570101.2 mRNA upstream 27327 85229691 ~ 85241799 (+) False fam210b
XM_036950831.1 mRNA upstream 27327 85230070 ~ 85241799 (+) False fam210b
XM_036950832.1 mRNA upstream 27327 85230782 ~ 85241799 (+) True fam210b
XM_036950828.1 mRNA upstream 56799 85042173 ~ 85212327 (+) False LOC118940502
XR_005037093.1 mRNA downstream 31287 85319403 ~ 85320964 (+) False LOC118940504
XR_005037094.1 mRNA downstream 31288 85319404 ~ 85320964 (+) True LOC118940504
XR_005037098.1 mRNA downstream 39146 85327262 ~ 85329770 (+) False LOC118940506
XM_036950838.1 mRNA downstream 442426 85730542 ~ 85821738 (+) False LOC110493284
XM_036950840.1 mRNA downstream 442426 85730542 ~ 85821738 (+) False LOC110493284
TU1714100 other upstream 53053 85214793 ~ 85216073 (+) True G1499347
TU1713850 other upstream 457941 84810531 ~ 84811185 (+) True G1499159
TU1713884 other upstream 476626 84789132 ~ 84792500 (+) True LOC110493283
TU1713482 other upstream 583743 84677540 ~ 84685383 (+) True LOC110493280
TU1713564 other upstream 703519 84544590 ~ 84565607 (+) False G1498912
TU1714136 other downstream 3669 85291785 ~ 85293121 (+) True G1499374
TU1714823 other downstream 337327 85625443 ~ 85711859 (+) False G1499923
TU1715184 other downstream 979212 86267328 ~ 86268175 (+) True G1500198
TU1715231 other downstream 1094182 86382298 ~ 86383545 (+) True G1500239
TU1715156 other downstream 1232714 86520830 ~ 86527030 (+) True G1500170