RNA id: XR_005037096.1


Basic Information

Item Value
RNA id XR_005037096.1
length 1472
RNA type mRNA
GC content 0.37
exon number 2
gene id LOC118940505
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85325153 ~ 85326712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATAATCACATACCCAAGAATATTTATAtattaaaaaaagaaaagtgtGCACTCTGAACGACGTCGTAAGACAACAGGCAGCAGTCCCAGGACAGATAACAGAGTATGTGAAGCCCTCCTAATGGATATTTCGGGAGCTGAGGGGGACaacgattttttatttttttttttttgtattttattttaggtATGATGGACATCGGACACATAGGGTGACTTGGATGCATTAGGGACTCTGAACGATATCGGAGGAACCGATGAAACAGACAGTATTCGGTCTTTTTGTATGAAACGTTTTTCCAAACACTCCAAGAACAGAGAATTTAAACGTCCCGACAACAACCCAGGGAACCACCACCCCCACACAACATAGTCCAGACCCCAACAACAAAAGCACAACGGTGGCCCAAGTGCATTGCGCAGAATCACCAGAGGTATTAATTCTAGGCATTTACatgtatgtttttaaaaatgAAGACTATTTATACaatgaaacaatgtttttttattcacactgTTTGTAAACAATAACTTTTGCCCTCTTAGGGTCTACTTGACCTGCTTATTGATTAGAAAGTATGATTAGAAACCAAGGCTGTGGAATATATTCGCTCTCACAGGCTATGAAAAAGACAAAAGCTAGGACATTGACTCCGGAGTGTTGAACTTATGCCCACTCTACAACAACCCCGGTTGTTATATGACCCCTGAGGATCATCTACGAACGTTGGAACATCTACAACTATTGAAGATGCAAAAAGGGGTTTTCAGAAACACATTTGGTTTACAGATATGTATTATTATAAAAATAATATAACATTATTATCATAATCTAAAACACTTTAAAGGATCTCTAATTCAAACATgcaaggatatatatatatatatatatgatacgATTAACCACTTTAAAACTGTTGCTGCAATATCACTTCTCAATGTGTGTACATTTCAAGGTTTCAACAACAATAAACAAACCAGCTCAATAATGTTTCTCAGACTTACAAACTGTTGAGTTTTCCTAGTTAGTAAAGAAACAACCACTAAGCCAAAACCCCAAAAGTTGTAATATAATCTGTATACAAGTCATTCTATACAGAAAACAGGTACATTTTGATTGATCAAGAATTCCCAATAggtttgtgtcacgccctgaccatagtttgctatgtatgtttataggttttgtttggtatgggtgtgatatgagtgggcattctatgatgtatgtctagtttgtctttTTTCAGTGTTTGGCCGGATATTGTTTTCAATCAGAGGCctgtgttagtcgttgtctctgattgggaaccatatttaggtagcctgtgttgTCATtgttgggtgattgtctatgttaggtgcttgtgtcagcacattgggtatatagcgtcacggtcgttgTTCATTTATTGGCTTGTTCAGTTTACTTTGTGTTTTCGTCATCCATTAAAacgatgcattcacacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1714521 lncRNA downstream 37036 85251788 ~ 85288117 (-) False G1499684
TU1714593 lncRNA downstream 42390 85281851 ~ 85282763 (-) True G1499711
TU1714572 lncRNA downstream 70401 85253935 ~ 85254752 (-) True G1499696
TU1714497 lncRNA downstream 83356 85239880 ~ 85241797 (-) False G1499667
TU1714496 lncRNA downstream 83356 85239981 ~ 85241797 (-) True G1499667
TU1714606 lncRNA upstream 16856 85343568 ~ 85376275 (-) True G1499721
TU1714623 lncRNA upstream 69206 85395918 ~ 85397768 (-) True G1499737
TU1714629 lncRNA upstream 76310 85403022 ~ 85403400 (-) True G1499743
TU1714670 lncRNA upstream 148528 85475240 ~ 85475490 (-) True G1499781
TU1714711 lncRNA upstream 178124 85504836 ~ 85505044 (-) True G1499822
XR_005037097.1 mRNA downstream 6300 85316345 ~ 85318853 (-) True LOC110487407
XM_036950836.1 mRNA downstream 10194 85300306 ~ 85314959 (-) False shmt2
XR_005037092.1 mRNA downstream 120478 85190797 ~ 85204675 (-) True LOC118940503
XM_036950827.1 mRNA downstream 330150 84950520 ~ 84995003 (-) True LOC110494769
XM_036950826.1 mRNA downstream 345482 84950520 ~ 84979671 (-) False LOC110494769
XM_021570105.2 mRNA upstream 17809 85344521 ~ 85425394 (-) True LOC110494775
XM_021570106.2 mRNA upstream 383489 85710201 ~ 85713130 (-) True LOC110494776
XM_036950855.1 mRNA upstream 791863 86118575 ~ 86156759 (-) False LOC110493286
XM_036950856.1 mRNA upstream 791863 86118575 ~ 86156759 (-) False LOC110493286
XM_036950854.1 mRNA upstream 791863 86118575 ~ 86183605 (-) True LOC110493286
TU1714519 other downstream 37036 85286656 ~ 85288117 (-) False G1499684
TU1714522 other downstream 37036 85286656 ~ 85288117 (-) True G1499684
TU1714505 other downstream 102034 85221125 ~ 85223119 (-) True G1499671
TU1713103 other downstream 1267761 84051010 ~ 84057392 (-) True G1498522
TU1712995 other downstream 1342259 83982341 ~ 83982894 (-) True G1498442
TU1715872 other upstream 913006 86239718 ~ 86242928 (-) True LOC110494779
TU1715969 other upstream 1122967 86449679 ~ 86450734 (-) True G1500834
TU1716092 other upstream 1471353 86798065 ~ 86806531 (-) False LOC110493290
TU1716093 other upstream 1471353 86798065 ~ 86806531 (-) False LOC110493290
TU1716920 other upstream 1807346 87134058 ~ 87159244 (-) False G1501650

Expression Profile