RNA id: TU1714158


Basic Information

Item Value
RNA id TU1714158
length 407
lncRNA type read_through
GC content 0.48
exon number 4
gene id LOC118940506
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85327147 ~ 85362000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGATAGTTCAAACTTTGAATTTCAAACGATTCTCTACAGATGGGACCCCATGTTGAACCCACACAAACAAACCCTTTGTTTtttgaaacgcacacacacactcctgctgctcCGTCACACGCACACTCATGCACGCACCCTGATTTTCAATGTCTTTTTCTTCGCGACAGAGTTGGCTGAAGATGTGAAATACCGTTTCACATAGTTACGGACCGGGTTGATGGCTGGAAAGGACATTTTCCCTTCGTTAAAGGATAGATGGTCCGGTTAGCCACGACCATTATCCATTTCAAATTCATCAACTCAAAGACGCTTGTCCGCTCCATCAAAACTCCgacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1714139 lncRNA upstream 26039 85298567 ~ 85301108 (+) False G1499375
TU1714143 lncRNA upstream 26039 85298567 ~ 85301108 (+) False G1499375
TU1714144 lncRNA upstream 26039 85298567 ~ 85301108 (+) False G1499375
TU1714145 lncRNA upstream 26039 85298567 ~ 85301108 (+) False G1499375
TU1714146 lncRNA upstream 26039 85298567 ~ 85301108 (+) False G1499375
TU1714192 lncRNA downstream 41019 85403019 ~ 85403370 (+) True G1499413
TU1714650 lncRNA downstream 101467 85463467 ~ 85463670 (+) True G1499763
TU1714684 lncRNA downstream 123434 85485434 ~ 85485641 (+) True G1499795
TU1714717 lncRNA downstream 149818 85511818 ~ 85512828 (+) True G1499828
TU1714740 lncRNA downstream 172913 85534913 ~ 85535135 (+) True G1499849
XR_005037093.1 mRNA upstream 6183 85319403 ~ 85320964 (+) False LOC118940504
XR_005037094.1 mRNA upstream 6183 85319404 ~ 85320964 (+) True LOC118940504
XM_036950833.1 mRNA upstream 39036 85269122 ~ 85288111 (+) False LOC110494772
XM_021570101.2 mRNA upstream 85348 85229691 ~ 85241799 (+) False fam210b
XM_036950831.1 mRNA upstream 85348 85230070 ~ 85241799 (+) False fam210b
XM_036950838.1 mRNA downstream 368542 85730542 ~ 85821738 (+) False LOC110493284
XM_036950840.1 mRNA downstream 368542 85730542 ~ 85821738 (+) False LOC110493284
XM_036950842.1 mRNA downstream 368543 85730543 ~ 85821738 (+) False LOC110493284
XM_036950843.1 mRNA downstream 368543 85730543 ~ 85821738 (+) False LOC110493284
XM_036950844.1 mRNA downstream 368543 85730543 ~ 85821738 (+) False LOC110493284
TU1714136 other upstream 34026 85291785 ~ 85293121 (+) True G1499374
TU1714116 other upstream 39031 85269126 ~ 85288116 (+) False LOC110494772
TU1714823 other downstream 263443 85625443 ~ 85711859 (+) False G1499923
TU1715184 other downstream 905328 86267328 ~ 86268175 (+) True G1500198
TU1715231 other downstream 1020298 86382298 ~ 86383545 (+) True G1500239
TU1715156 other downstream 1158830 86520830 ~ 86527030 (+) True G1500170
TU1716335 other downstream 1806539 87168539 ~ 87169007 (+) True G1501148

Expression Profile