RNA id: XM_021570105.2


Basic Information

Item Value
RNA id XM_021570105.2
length 2524
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110494775
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85344521 ~ 85425394 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagagagggggagagaaggaacaAAAACATTTTCTCTTAAACCATCCTCTCAGCTGTGAGTGGTACAGGAGATGCTCTCGTGATTCGGGATCTTCATTCTGATTAACGTTCTCTTCCCGCAAGGTGACTTTGCGTCCCCGCGCAAACTTCCCGACTTCTGTCCTCCAATATTCGTTCAAAACTATGGATATGCCTCTCAGAAACGAAACGGACCGGAAAATATAAACCTTCAACTAATTATCGGTATCGAAAATACGGTGAAATAGACGGAGAGAAAAATACCTACATCGaaacttttttttggggggggggggttattttttctctctctgtgtgtctgcctcgTCTCTTTGTGTTGGATTGTGTGAAGCTGTGATCCCTGCCGAGCGTTGCTGCTGTGTGTATGTCAACCCAAGGAGACTCGTAGTGTCAGGGTGGTCCGCGACGGAAGGTGTGCTGCGATGATGAAGGTACTCGTTTGGACCATTGTGATCCTCGCCCAGTGCGTTCTACGAAAGGTGCAGGGACTGGAGAAGCAGGTGGCCAAGAACTACCCAGGTCTAGACCTGGGTCCAGCAGGCTCAGTGATGAAGACCACATATGGCATAGGGGGTAGAGCCTTGGGCACCGGAGGAGGGAGCGCAGGGGGAGTTAAACCACCCTACCAAACAACCTCCCGCATCTTCTCCCCAGGCATGGACGGGGTCGGCAACCCGCCCATGAAGCCCCCTCTGAAAAGTCCCACCTATAGCTTCCTCAACCCTTACGACTGGGCAAAGAATCAGTCtcttctcctggaccagacaggcTATCGTAACAAACGCAAACCATCACTGAAGACGGCCCAGAAGACCAAGAAGATCTTTGGCTGGGGAGATTTCTACTTCAACGTGAAAACCATGAAGTTCAGCCTCTTGGTCACCGGGAAGATCGTGGACCACATCAACGGCACGTTCACCGTCTACTTCCGCCACAACTCGTCCAGTCTCGGTAACGTCTCCGTGAGTATCGTCCCTCCAACTAAAATAGTGGAGTTCGAGGTTCTCCAGCACCATCAACCGGGCCTCCACGCCCAGCTCCACCCTGAGCTTCACACCCAGATCGCTCAACAACAGACCCCGCACCAGTCCACCTTCGACCCCAAGGAGGTAAAGACCTTCAACTGCCGTGTGGAGTACGAGAAGACTAACCGCTCCAAGAAACCCAAGCCCTGCCTCTACGACCCGTCTCAGACCTGCTTCTCAGAGCACACTCAGTCCCACGCCGCCTGGCTCTGCGCCAAACCTTTCAAAGTCATCTGTATCTTCATCTCCTTCTTTAGCATCGATTATAAGCTGGTTCAAAAAGTGTGTCCGGACTACAACTTCCAGAGCGAACACCCTTACCTTGGATAAGAGAGGAGCGGGAGAGGAGAAAGTCTGGAGCGTGTTTCGAGGGGATCTGTTTAAGCAAAGGGCCAAACGCAGAATCACTCATCTTGATCTCTCGTTTAAACAGAGAATGTGTAGTTATTtgggatgcaaggtgatttgtagatcagtgatcCTGCGCAGTCCGACTGCAATGTGTTGTTGTCGATCTCGAACATGCACAATGTCAGGACCGATGACTTTTTTTCTGCTCTCAACCTCCCGTCGGATTGTGGATATTATTCAAATGAAGTACTGGTTGTCGATATTATAGATGATATAAATATGGCAGATTTTTTCAACCGATTTACGTAAAAACATTTGTGCTATTTGTCTTTGATTTGAAtgtaaataatgtaaaaaaaaaaatctatacagCTCTTAGAAATTGGTTATTATCAGTGTTAATTCATTTTTGTCTGTTGGAGAAATCGAATTTCAAAACATCAAAGCAAGCTTGGAAGTATGGACTTTTAAGTTGATGACTTCATATTCTCCCTGGTGATATAAATGTCTCATGCTGTCCTTGTGTAAATCTCGGAACCCAGAATCTTGGAACCCGGAACCAAATTTCATGTATGCAACAGTCTGTCACAAGGGACTAGTCTTTGTATGGCATTATAGGTTCTAGAAGGTTTTCATGATTTCAGTCTTATTTTTTGAATCCTGGCTACAAGATCATGATTGTGGAGTCCTGGAGTTATATGTATACAATACAATATTGTACATTGTACTGGGATTTATTTCCACATTCCATTATATTTTACATTCACTTTAACACATTTATTAGGCATTGTATGAGGCGAGAGTGTTGTATGAGGCAGGAGCATTGTATGAGGCAGGAGCATTATTGTATTAGGCAAGAGCATTGTATGAGGCATTATATAAGGAAATAAATATTCAACAAATGATAATATCTGATCAGGAATTTATTCAGCTGGGTAATATCAAAACATAACTATTCTATAGGATTTTTCTGTCCAATCAGAATATTGTACATGTAAGTCCAAAGAAGTAAAGATCATGGATACCCTTTCAGAGAATGTATGAATGGTTTAATTTGACATTAGGAGAGaaatcaaaaaataataataaaggaaTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1714521 lncRNA downstream 56404 85251788 ~ 85288117 (-) False G1499684
TU1714593 lncRNA downstream 61758 85281851 ~ 85282763 (-) True G1499711
TU1714572 lncRNA downstream 89769 85253935 ~ 85254752 (-) True G1499696
TU1714497 lncRNA downstream 102724 85239880 ~ 85241797 (-) False G1499667
TU1714496 lncRNA downstream 102724 85239981 ~ 85241797 (-) True G1499667
TU1714670 lncRNA upstream 49846 85475240 ~ 85475490 (-) True G1499781
TU1714711 lncRNA upstream 79442 85504836 ~ 85505044 (-) True G1499822
TU1714743 lncRNA upstream 113068 85538462 ~ 85538662 (-) True G1499852
TU1715579 lncRNA upstream 244253 85669647 ~ 85751343 (-) True G1500504
TU1715591 lncRNA upstream 251935 85677329 ~ 85682322 (-) True G1500513
XM_036950834.1 mRNA downstream 1855 85300306 ~ 85342666 (-) False shmt2
XM_036950835.1 mRNA downstream 1855 85300306 ~ 85342666 (-) True shmt2
XR_005037096.1 mRNA downstream 17809 85325153 ~ 85326712 (-) True LOC118940505
XR_005037095.1 mRNA downstream 17810 85325153 ~ 85326711 (-) False LOC118940505
XR_005037097.1 mRNA downstream 25668 85316345 ~ 85318853 (-) True LOC110487407
XM_021570106.2 mRNA upstream 284807 85710201 ~ 85713130 (-) True LOC110494776
XM_036950855.1 mRNA upstream 693181 86118575 ~ 86156759 (-) False LOC110493286
XM_036950856.1 mRNA upstream 693181 86118575 ~ 86156759 (-) False LOC110493286
XM_036950854.1 mRNA upstream 693181 86118575 ~ 86183605 (-) True LOC110493286
XM_021570109.2 mRNA upstream 811160 86236554 ~ 86242991 (-) False LOC110494779
TU1714519 other downstream 56404 85286656 ~ 85288117 (-) False G1499684
TU1714522 other downstream 56404 85286656 ~ 85288117 (-) True G1499684
TU1714505 other downstream 121402 85221125 ~ 85223119 (-) True G1499671
TU1713103 other downstream 1287129 84051010 ~ 84057392 (-) True G1498522
TU1712995 other downstream 1361627 83982341 ~ 83982894 (-) True G1498442
TU1715872 other upstream 814324 86239718 ~ 86242928 (-) True LOC110494779
TU1715969 other upstream 1024285 86449679 ~ 86450734 (-) True G1500834
TU1716092 other upstream 1372671 86798065 ~ 86806531 (-) False LOC110493290
TU1716093 other upstream 1372671 86798065 ~ 86806531 (-) False LOC110493290
TU1716920 other upstream 1708664 87134058 ~ 87159244 (-) False G1501650

Expression Profile